Guide to the Human Genome
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Name: NCOA4 Sequence: fasta or formatted (650aa) NCBI GI: 223890278
Description:

nuclear receptor coactivator 4 isoform 1

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [614aa] nuclear receptor coactivator 4 isoform 3
alt prot [630aa] nuclear receptor coactivator 4 isoform 2
alt prot [614aa] nuclear receptor coactivator 4 isoform 3
alt prot [614aa] nuclear receptor coactivator 4 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         32           1
 C cysteine            3.5         23           1
 D aspartate           4.8         31           1
 E glutamate           8.3         54           2
 F phenylalanine       3.4         22           2
 G glycine             4.9         32           2
 H histidine           1.8         12           1
 I isoleucine          3.1         20           1
 K lysine              8.0         52           2
 L leucine            10.9         71           2
 M methionine          2.2         14           1
 N asparagine          5.4         35           2
 P proline             5.8         38           2
 Q glutamine           6.8         44           3
 R arginine            3.7         24           2
 S serine              8.5         55           3
 T threonine           5.2         34           2
 V valine              4.8         31           1
 W tryptophan          2.2         14           1
 Y tyrosine            1.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor coactivator 4 isoform 1 
NCOA4                 0.965   nuclear receptor coactivator 4 isoform 2 
NCOA4                 0.943   nuclear receptor coactivator 4 isoform 3 
NCOA4                 0.943   nuclear receptor coactivator 4 isoform 3 
NCOA4                 0.943   nuclear receptor coactivator 4 isoform 3 
TRIM71                0.010   tripartite motif-containing 71 
HAUS3                 0.008   HAUS augmin-like complex, subunit 3 
STK10                 0.008   serine/threonine kinase 10 
RBM19                 0.008   RNA binding motif protein 19 
RBM19                 0.008   RNA binding motif protein 19 
RBM19                 0.008   RNA binding motif protein 19 
DMXL2                 0.006   Dmx-like 2 
ERC2                  0.006   cytomatrix protein p110 
ANKRD11               0.006   ankyrin repeat domain 11 
GSS                   0.006   glutathione synthetase 
RASSF8                0.006   Ras association (RalGDS/AF-6) domain family (N-termi...
NEFH                  0.005   neurofilament, heavy polypeptide 200kDa 
ERC1                  0.005   RAB6-interacting protein 2 isoform epsilon 
TRIM3                 0.005   tripartite motif-containing 3 
TRIM3                 0.005   tripartite motif-containing 3 
TRAF5                 0.005   TNF receptor-associated factor 5 
TRAF5                 0.005   TNF receptor-associated factor 5 
TRAF5                 0.005   TNF receptor-associated factor 5 
ITGB1                 0.005   integrin beta 1 isoform 1C-1 precursor 
ITGB1                 0.005   integrin beta 1 isoform 1B precursor 
ITGB1                 0.005   integrin beta 1 isoform 1A precursor 
ITGB1                 0.005   integrin beta 1 isoform 1A precursor 
ITGB1                 0.005   integrin beta 1 isoform 1C-2 precursor 
ITGB1                 0.005   integrin beta 1 isoform 1D precursor 
ERC1                  0.005   RAB6-interacting protein 2 isoform delta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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