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Search of human proteins with 169212153
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169212153 PREDICTED: hypothetical protein [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169212153 PREDICTED: hypothetical protein [Homo sapiens] 394 e-110
gi|169211716 PREDICTED: hypothetical protein [Homo sapiens] 394 e-110
gi|169211169 PREDICTED: hypothetical protein [Homo sapiens] 394 e-110
gi|239757723 PREDICTED: hypothetical protein [Homo sapiens] 73 1e-13
gi|239752210 PREDICTED: hypothetical protein [Homo sapiens] 73 1e-13
gi|239746733 PREDICTED: hypothetical protein [Homo sapiens] 70 8e-13
gi|169194706 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|169201915 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|169191953 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ... 44 8e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 42 2e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 41 7e-04
gi|18079216 CASK interacting protein 1 [Homo sapiens] 40 0.001
gi|19924097 synapsin I isoform Ib [Homo sapiens] 39 0.002
gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo ... 39 0.003
gi|40353727 synaptopodin isoform A [Homo sapiens] 39 0.003
gi|113428456 PREDICTED: similar to mCG141871 [Homo sapiens] 38 0.005
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.005
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.005
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.005
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.005
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.005
gi|55750053 atrophin-1 [Homo sapiens] 38 0.005
gi|55750041 atrophin-1 [Homo sapiens] 38 0.005
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 38 0.005
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 38 0.005
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 38 0.006
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 38 0.006
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 38 0.006
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 38 0.006
>gi|169212153 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 394 bits (1013), Expect = e-110
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MGSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP 60
MGSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP
Sbjct: 1 MGSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP 60
Query: 61 SALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDK 120
SALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDK
Sbjct: 61 SALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDK 120
Query: 121 WEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAP 180
WEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAP
Sbjct: 121 WEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAP 180
Query: 181 LHSWGLGRPP 190
LHSWGLGRPP
Sbjct: 181 LHSWGLGRPP 190
>gi|169211716 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 394 bits (1013), Expect = e-110
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MGSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP 60
MGSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP
Sbjct: 1 MGSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP 60
Query: 61 SALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDK 120
SALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDK
Sbjct: 61 SALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDK 120
Query: 121 WEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAP 180
WEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAP
Sbjct: 121 WEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAP 180
Query: 181 LHSWGLGRPP 190
LHSWGLGRPP
Sbjct: 181 LHSWGLGRPP 190
>gi|169211169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 394 bits (1013), Expect = e-110
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MGSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP 60
MGSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP
Sbjct: 1 MGSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP 60
Query: 61 SALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDK 120
SALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDK
Sbjct: 61 SALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDK 120
Query: 121 WEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAP 180
WEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAP
Sbjct: 121 WEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAP 180
Query: 181 LHSWGLGRPP 190
LHSWGLGRPP
Sbjct: 181 LHSWGLGRPP 190
>gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 73.2 bits (178), Expect = 1e-13
Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164
A+AA SME A DK E PFQV + LQLPK L+ + S C+ G + + GAPPS
Sbjct: 23 ARAACSMEKAKARDKRETRPFQVGVRASWML-LQLPKPWLQTQASLCSQGPEGQVGAPPS 81
Query: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190
QAQL+ KP LQTQA LHSWG + P
Sbjct: 82 QAQLQLPKPWLQTQASLHSWGPRKAP 107
>gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 73.2 bits (178), Expect = 1e-13
Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164
A+AA SME A DK E PFQV + LQLPK L+ + S C+ G + + GAPPS
Sbjct: 23 ARAACSMEKAKARDKRETRPFQVGVRASWML-LQLPKPWLQTQASLCSQGPEGQVGAPPS 81
Query: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190
QAQL+ KP LQTQA LHSWG + P
Sbjct: 82 QAQLQLPKPWLQTQASLHSWGPRKAP 107
>gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 70.5 bits (171), Expect = 8e-13
Identities = 44/86 (51%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164
A+AA SME A DK E PFQV + LQ PK L+ + S C+ G + + GAPPS
Sbjct: 23 ARAACSMEKAKARDKRETRPFQVGVRASWML-LQPPKPWLQTQASLCSQGPEGQVGAPPS 81
Query: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190
QAQL+ KP LQTQA LHSWG + P
Sbjct: 82 QAQLQLPKPWLQTQASLHSWGPRKAP 107
>gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 46.2 bits (108), Expect = 2e-05
Identities = 35/83 (42%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 112 MEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGL----RPRHSCALGSQEKAGAPPSQAQ 167
MEPV AGDK EP PFQV G QAQL + P S LG+ A A P
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
Query: 168 LEPFKPQLQTQAPLHSWGLGRPP 190
LQ QA LHS G + P
Sbjct: 61 ATLL--WLQIQASLHSQGSRKAP 81
>gi|169201915 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 46.2 bits (108), Expect = 2e-05
Identities = 35/83 (42%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 112 MEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGL----RPRHSCALGSQEKAGAPPSQAQ 167
MEPV AGDK EP PFQV G QAQL + P S LG+ A A P
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
Query: 168 LEPFKPQLQTQAPLHSWGLGRPP 190
LQ QA LHS G + P
Sbjct: 61 ATLL--WLQIQASLHSQGSRKAP 81
>gi|169191953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 46.2 bits (108), Expect = 2e-05
Identities = 35/83 (42%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 112 MEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGL----RPRHSCALGSQEKAGAPPSQAQ 167
MEPV AGDK EP PFQV G QAQL + P S LG+ A A P
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
Query: 168 LEPFKPQLQTQAPLHSWGLGRPP 190
LQ QA LHS G + P
Sbjct: 61 ATLL--WLQIQASLHSQGSRKAP 81
>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
potassium channel 3 [Homo sapiens]
Length = 774
Score = 43.9 bits (102), Expect = 8e-05
Identities = 28/75 (37%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 27 LTAPPPPNGWAGPTARCRPSMAASISLP---TTSGSPSALAAGSCRIGPRSIRFICAALA 83
L PPP G R RP A+ SLP T GSP +GS R+ P + A
Sbjct: 693 LLGPPPGGGGRRLGPRGRPLSASQPSLPQRATGDGSPGRKGSGSERLPPSGLLAKPPRTA 752
Query: 84 RAPMPPAPRPCTTAG 98
+ P PP P P T G
Sbjct: 753 QPPRPPVPEPATPRG 767
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 42.4 bits (98), Expect = 2e-04
Identities = 40/143 (27%), Positives = 52/143 (36%), Gaps = 10/143 (6%)
Query: 2 GSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPS 61
G+ + R+ G +P APPPP P A P+ A + + PS
Sbjct: 105 GATPPAPPRAPRGAPAAAAAAAPPPTPAPPPP---PAPVAAAAPARAPRAAAAAATAPPS 161
Query: 62 ALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKW 121
G + GPR+ R A LA P PA P R A + EP
Sbjct: 162 P---GPAQPGPRAQR--AAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQ 216
Query: 122 EPSPFQVARAGTPQAQLQLPKEG 144
P+P Q + PQ Q P EG
Sbjct: 217 PPAPPQQQQPPPPQP--QPPPEG 237
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 40.8 bits (94), Expect = 7e-04
Identities = 51/196 (26%), Positives = 71/196 (36%), Gaps = 20/196 (10%)
Query: 11 SSSGGGRTPF--PVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSG--SPSALAAG 66
S G TP P SP+ A PPP G P A PS+ ++ P G +P+ +
Sbjct: 1236 SPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPP 1295
Query: 67 SCRIGPRSIRFICAALARAPMPPAPR-----PCTTAGKTQRGVT---AKAAHSMEPVAAG 118
S + GP + A A PP+P+ P T VT K ++
Sbjct: 1296 SPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPS 1355
Query: 119 DKWEPSPFQVARAGTPQAQLQLPKEG-----LRPRHSCALGSQEKAGAPPSQAQLEPFKP 173
K P+ TP A K G P+ A+ S + G P S A + P P
Sbjct: 1356 SKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPK--GDPTSPAVI-PLSP 1412
Query: 174 QLQTQAPLHSWGLGRP 189
+ P+ G P
Sbjct: 1413 KKAPATPVTREGAATP 1428
Score = 38.9 bits (89), Expect = 0.003
Identities = 50/191 (26%), Positives = 66/191 (34%), Gaps = 16/191 (8%)
Query: 12 SSGGGRTP---FPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSALAA--G 66
S G TP P SP+ A P P P A PS + P+ G+P+ AA
Sbjct: 935 SPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPP 994
Query: 67 SCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWEPSPF 126
S + GP + A A PP+P+ A +G + A + P + +P
Sbjct: 995 SPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAAT--PPSPKGSPAATPL 1052
Query: 127 QVARAGTPQAQLQLPKEGL-------RPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQA 179
TP A L PK G P A K G + P P +
Sbjct: 1053 PKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPS 1112
Query: 180 PLHSWGLGRPP 190
P GL PP
Sbjct: 1113 P--KGGLATPP 1121
Score = 37.7 bits (86), Expect = 0.006
Identities = 47/188 (25%), Positives = 67/188 (35%), Gaps = 23/188 (12%)
Query: 11 SSSGGGRTPFP---VSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSALAAGS 67
S GG TP P +P T P P G A P+ + P+ A ++ P+ GSP+A
Sbjct: 972 SPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPA-VTPPSPKGSPAATPF-- 1028
Query: 68 CRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSME-----PVAAGDKWE 122
P+ A+ A PP+P+ A +G A ++ P K
Sbjct: 1029 ----PKG-----ASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGA 1079
Query: 123 PSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAPLH 182
P+P A +P+ P P A K G + P P +P
Sbjct: 1080 PTP-PAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSP-- 1136
Query: 183 SWGLGRPP 190
GL PP
Sbjct: 1137 KGGLATPP 1144
Score = 37.7 bits (86), Expect = 0.006
Identities = 43/179 (24%), Positives = 57/179 (31%), Gaps = 15/179 (8%)
Query: 21 PVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSALAA-------GSCRIGPR 73
P SP+ A PPP G A PS ++ P+ G+P+ AA G P+
Sbjct: 1156 PPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPK 1215
Query: 74 SIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWEPSPFQVARAGT 133
A A PP+P+ + T AA P P A T
Sbjct: 1216 G-----APTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT 1270
Query: 134 P---QAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQTQAPLHSWGLGRP 189
P + L P P + K G S + P P +P S G P
Sbjct: 1271 PPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPP 1329
Score = 37.0 bits (84), Expect = 0.010
Identities = 52/195 (26%), Positives = 66/195 (33%), Gaps = 37/195 (18%)
Query: 11 SSSGGGRTPFP---VSPRHLTAPPP---------PNGWAGPTARCRPSMAAS-ISLPTTS 57
S GG TP P +P +T P P P G + P A PS S + P
Sbjct: 995 SPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPK 1054
Query: 58 GSPSALAA--GSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPV 115
G+P+ AA S + GP + +L AP PPA P + G P
Sbjct: 1055 GAPTTPAATLPSPKGGPAT-----PSLKGAPTPPAATPPSPKG--------------GPA 1095
Query: 116 AAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQL 175
K P P A +P+ L P P A K G + P P
Sbjct: 1096 TPSPKGAPMP-PAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAA 1154
Query: 176 QTQAPLHSWGLGRPP 190
+P GL PP
Sbjct: 1155 TPPSP--KGGLATPP 1167
Score = 36.6 bits (83), Expect = 0.013
Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 25/168 (14%)
Query: 21 PVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSALAA-------GSCRIGPR 73
P SP+ A P P G P A PS ++ P G+P+ AA G P+
Sbjct: 1087 PPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPK 1146
Query: 74 SIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWEPSPFQVARAGT 133
A A PP+P+ + T AA P G PSP T
Sbjct: 1147 G-----APTTPAATPPSPKGGLATPPPKGAPTTPAA--TPPSPKGGLATPSP--KGAPTT 1197
Query: 134 PQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPF-KPQLQTQAP 180
P A PK G L + GAP + A P K L T +P
Sbjct: 1198 PAATPPSPKGG--------LATPSPKGAPTTPAATPPSPKGGLATPSP 1237
Score = 35.0 bits (79), Expect = 0.039
Identities = 37/131 (28%), Positives = 46/131 (35%), Gaps = 16/131 (12%)
Query: 21 PVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSALAA-------GSCRIGPR 73
P SP+ A PPP G A PS ++ P G+P+ AA G P+
Sbjct: 1133 PPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPK 1192
Query: 74 SIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWEPSPFQVARAGT 133
A A PP+P+ + T AA P G PSP T
Sbjct: 1193 G-----APTTPAATPPSPKGGLATPSPKGAPTTPAA--TPPSPKGGLATPSP--KGAPTT 1243
Query: 134 PQAQLQLPKEG 144
P A PK G
Sbjct: 1244 PAATPPSPKGG 1254
Score = 34.7 bits (78), Expect = 0.051
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 26/177 (14%)
Query: 12 SSGGGRTPFPVSPRH-----LTAPPPPNGWAGPTARCRPSMAASISL--------PTTSG 58
SS G TP +P H +T P P G A P+ + P+ A I L P T
Sbjct: 1364 SSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTRE 1423
Query: 59 SPSALAAGSCRIGPRSIRFICAALARAPMPPAPR--PCTTAGKTQRGVTAKAAHSMEPVA 116
+ + G + P ++ + +L +AP AP+ P T + K + A S
Sbjct: 1424 GAATPSKGD--LTPPAVTPV--SLKKAPATSAPKGGPATPSSKGDPTLPAVTPPS----- 1474
Query: 117 AGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKP 173
K P+P QVA + +P+ P P + S K ++ +P P
Sbjct: 1475 --PKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAP 1529
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 40.4 bits (93), Expect = 0.001
Identities = 49/179 (27%), Positives = 62/179 (34%), Gaps = 21/179 (11%)
Query: 2 GSVVRSSSRSSSGGGRTPFPVSPR--------HLTAPPPPNGWAGPTAR--CRPSMAASI 51
G+V R + +G P P P HL PPP G A A+ P +
Sbjct: 1175 GTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQ 1234
Query: 52 SLPTTSGSPSALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHS 111
+P GSP+ + GP S A P+ P P P TA K KA
Sbjct: 1235 PVPKLQGSPTPTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPK-----PVKAVAG 1289
Query: 112 MEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEP 170
+ +AG PSP A P A L P G P + GAP +P
Sbjct: 1290 LPSGSAGPSPAPSP-----ARQPPAALAKP-PGTPPSLGASPAKPPSPGAPALHVPAKP 1342
Score = 28.9 bits (63), Expect = 2.8
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 30/110 (27%)
Query: 18 TPFPVSPRHLTAPPP---------------PNGWAGPTARCRPSMAASISLPTTSGSPSA 62
TP PVS PP P+G AGP+ P+ +L G+P +
Sbjct: 1266 TPPPVS-----PKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPS 1320
Query: 63 LAAGSCR----------IGPRSIRFICAALARAPMPPAPRPCTTAGKTQR 102
L A + + + R AA A A PPAP + G + R
Sbjct: 1321 LGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSAR 1370
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 39.3 bits (90), Expect = 0.002
Identities = 45/163 (27%), Positives = 59/163 (36%), Gaps = 27/163 (16%)
Query: 9 SRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSALAAGSC 68
SR +GG P P A P P AGP R + + + P SG+P G
Sbjct: 533 SRPVAGGPGAPPAARP---PASPSPQRQAGPPQATRQTSVSGPAPPKASGAP---PGGQQ 586
Query: 69 RIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWEPSPFQV 128
R GP PP P AG T++ A A + +P P
Sbjct: 587 RQGP------------PQKPPGP-----AGPTRQ---ASQAGPVPRTGPPTTQQPRPSGP 626
Query: 129 ARAGTPQAQL-QLPKEGLRPRHSCALGSQEKAGAPPSQAQLEP 170
AG P+ QL Q P + + P + A G S AQ +P
Sbjct: 627 GPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASPAQAQP 669
>gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo
sapiens]
Length = 177
Score = 38.9 bits (89), Expect = 0.003
Identities = 21/98 (21%), Positives = 43/98 (43%)
Query: 28 TAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSALAAGSCRIGPRSIRFICAALARAPM 87
T P +G + CR ++ +S+ + +P + ++ PR + + + +
Sbjct: 57 TGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSSPSAW 116
Query: 88 PPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWEPSP 125
P+P C+++GK + ++ SM P A G P P
Sbjct: 117 KPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPP 154
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 6 RSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARC-RPSMAASISLPTTSGSPSALA 64
R S+ S G P P SP PPPP P R +P+ S ++P + +P +
Sbjct: 767 RKSASPRSAGAENPRPFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFAP--IP 824
Query: 65 AGSCRIGPRSIRFICAALARAPMPPAPRP 93
GP S C + R+P+P PRP
Sbjct: 825 RSPLPAGPSS----CTS-PRSPLPAPPRP 848
>gi|113428456 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 358
Score = 38.1 bits (87), Expect = 0.005
Identities = 34/103 (33%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 23 SPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSALAAGSCRIGPRSIRFICAAL 82
+P HLT PPPP +RC P A T SGS LAA GP +
Sbjct: 237 APAHLTPPPPP-----LPSRCLPQDEACAD--TGSGSAEGLAAD----GPHLHTLTQPIV 285
Query: 83 ARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWEPSP 125
P PP PRP + V +A P A EP+P
Sbjct: 286 VTVPRPP-PRP-------PKSVPGRAVRPEPPAPAPAALEPAP 320
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 38.1 bits (87), Expect = 0.005
Identities = 48/184 (26%), Positives = 61/184 (33%), Gaps = 50/184 (27%)
Query: 19 PFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSALAAGSCRIGPRSIRFI 78
P P +P + PP G A P A PS P + +P+A AA
Sbjct: 229 PKPAAPGTVIQTPPFVGAAAPPAPAAPS-------PPAAPAPAAPAA------------- 268
Query: 79 CAALARAPMPPAPRPCTTA-------------------GKTQRGVTAKAAHSMEPVA--- 116
AP PP P P T A Q G +A AA + P A
Sbjct: 269 ------APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGP 322
Query: 117 AGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQ 176
AG +P P A A P + + PK ++ A A P S A P +Q
Sbjct: 323 AGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAA--QTLAASGPASTAASMVIGPTMQ 380
Query: 177 TQAP 180
P
Sbjct: 381 GALP 384
Score = 37.7 bits (86), Expect = 0.006
Identities = 51/183 (27%), Positives = 61/183 (33%), Gaps = 36/183 (19%)
Query: 9 SRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSALAAGSC 68
+R GG + P P SPR P P G A P A+ RP P +AGSC
Sbjct: 95 ARPGGGGPQRPGPPSPRR---PLVPAGPAPPAAKLRP--------------PPEGSAGSC 137
Query: 69 RIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWEPSPFQV 128
P + AA+A P P P AG + A+A P G P P +
Sbjct: 138 APVPAA-----AAVAAGPEPAPAGPAKPAGPA--ALAARAGPGPGP-GPGPGPGPGPGKP 189
Query: 129 ARAGTPQA-----------QLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEPFKPQLQT 177
A G Q P L AL K AP + Q PF
Sbjct: 190 AGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAP 249
Query: 178 QAP 180
AP
Sbjct: 250 PAP 252
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 38.1 bits (87), Expect = 0.005
Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 8 SSRSSSGGGRTPFPVSPRHLTAPPP------PNGWAGPTARCRPSMAASISLPTTSGSPS 61
++ +S G T +P P T PPP P G P RP M I LP G+P
Sbjct: 156 AATASIAGAPTQYP--PGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPI 213
Query: 62 ALAAGSCRIGPRSIRFICAALARAPMPPAPRP 93
+ R P I R P PP RP
Sbjct: 214 GMPPPGMRPPPPGI--------RGPPPPGMRP 237
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 38.1 bits (87), Expect = 0.005
Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 8 SSRSSSGGGRTPFPVSPRHLTAPPP------PNGWAGPTARCRPSMAASISLPTTSGSPS 61
++ +S G T +P P T PPP P G P RP M I LP G+P
Sbjct: 156 AATASIAGAPTQYP--PGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPI 213
Query: 62 ALAAGSCRIGPRSIRFICAALARAPMPPAPRP 93
+ R P I R P PP RP
Sbjct: 214 GMPPPGMRPPPPGI--------RGPPPPGMRP 237
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 38.1 bits (87), Expect = 0.005
Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 8 SSRSSSGGGRTPFPVSPRHLTAPPP------PNGWAGPTARCRPSMAASISLPTTSGSPS 61
++ +S G T +P P T PPP P G P RP M I LP G+P
Sbjct: 156 AATASIAGAPTQYP--PGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPI 213
Query: 62 ALAAGSCRIGPRSIRFICAALARAPMPPAPRP 93
+ R P I R P PP RP
Sbjct: 214 GMPPPGMRPPPPGI--------RGPPPPGMRP 237
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 38.1 bits (87), Expect = 0.005
Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 8 SSRSSSGGGRTPFPVSPRHLTAPPP------PNGWAGPTARCRPSMAASISLPTTSGSPS 61
++ +S G T +P P T PPP P G P RP M I LP G+P
Sbjct: 156 AATASIAGAPTQYP--PGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPI 213
Query: 62 ALAAGSCRIGPRSIRFICAALARAPMPPAPRP 93
+ R P I R P PP RP
Sbjct: 214 GMPPPGMRPPPPGI--------RGPPPPGMRP 237
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 38.1 bits (87), Expect = 0.005
Identities = 51/181 (28%), Positives = 64/181 (35%), Gaps = 30/181 (16%)
Query: 11 SSSGGGRTPFPVSPRHLTAPPPPN-----GWAGPTARCRPSMAASISLPTTSGSPSALAA 65
S S G P+P P HL PPP+ AGP P ++S S +TS +
Sbjct: 533 SPSLGSLRPYPPGPAHL---PPPHSQVSYSQAGPNG--PPVSSSSNSSSSTSQGSYPCSH 587
Query: 66 GSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWEPSP 125
S GP+ A P PP P TT+ T V A A S P P
Sbjct: 588 PSPSQGPQG--------APYPFPPVP-TVTTSSATLSTVIATVASSPAGYKTASPPGPPP 638
Query: 126 FQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEP------FKPQLQTQA 179
+ RA +P A G +P + + G PP P FKP T
Sbjct: 639 YG-KRAPSPGAYKTATPPGYKPGSPPSF----RTGTPPGYRGTSPPAGPGTFKPGSPTVG 693
Query: 180 P 180
P
Sbjct: 694 P 694
Score = 28.9 bits (63), Expect = 2.8
Identities = 51/192 (26%), Positives = 65/192 (33%), Gaps = 30/192 (15%)
Query: 3 SVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSA 62
S SSS SSS +PFP S P P+ + PT S++ S + P PS
Sbjct: 382 SAAASSSSSSSSSSASPFPASQ---ALPSYPHSFPPPT-----SLSVS-NQPPKYTQPSL 432
Query: 63 LAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWE 122
+ GP LA + P P P +T ++ AH PV+
Sbjct: 433 PSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQS-------TAH--PPVSTHHHHH 483
Query: 123 PSPFQVARAGTPQAQLQL--------PKEGLRPRHSCALGSQEKA---GAPPSQAQLEPF 171
Q + Q Q Q P G P H GS A PS L P+
Sbjct: 484 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFP-HPLEGGSSHHAHPYAMSPSLGSLRPY 542
Query: 172 KPQLQTQAPLHS 183
P P HS
Sbjct: 543 PPGPAHLPPPHS 554
Score = 28.5 bits (62), Expect = 3.6
Identities = 48/227 (21%), Positives = 66/227 (29%), Gaps = 45/227 (19%)
Query: 2 GSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPS 61
G V+ GGG P PPP T S + + P T +
Sbjct: 225 GGVLSGPPMGPKGGGAASSVGGPNGGKQHPPP------TTPISVSSSGASGAPPTKPPTT 278
Query: 62 ALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAK--AAHSMEPVAAGD 119
+ G+ P F P PPA RP A + G+ A+ H P A G
Sbjct: 279 PVGGGNLPSAPPPANFPHVT-PNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQ 337
Query: 120 -------------KWEPSPFQV--ARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGA--- 161
PSP + A + P ++ P + A S + +
Sbjct: 338 GMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSAS 397
Query: 162 ---------------PPSQAQLEPFKPQLQTQAPLHS---WGLGRPP 190
PP + +P TQ L S W G PP
Sbjct: 398 PFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPP 444
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 38.1 bits (87), Expect = 0.005
Identities = 51/181 (28%), Positives = 64/181 (35%), Gaps = 30/181 (16%)
Query: 11 SSSGGGRTPFPVSPRHLTAPPPPN-----GWAGPTARCRPSMAASISLPTTSGSPSALAA 65
S S G P+P P HL PPP+ AGP P ++S S +TS +
Sbjct: 533 SPSLGSLRPYPPGPAHL---PPPHSQVSYSQAGPNG--PPVSSSSNSSSSTSQGSYPCSH 587
Query: 66 GSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWEPSP 125
S GP+ A P PP P TT+ T V A A S P P
Sbjct: 588 PSPSQGPQG--------APYPFPPVP-TVTTSSATLSTVIATVASSPAGYKTASPPGPPP 638
Query: 126 FQVARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGAPPSQAQLEP------FKPQLQTQA 179
+ RA +P A G +P + + G PP P FKP T
Sbjct: 639 YG-KRAPSPGAYKTATPPGYKPGSPPSF----RTGTPPGYRGTSPPAGPGTFKPGSPTVG 693
Query: 180 P 180
P
Sbjct: 694 P 694
Score = 28.9 bits (63), Expect = 2.8
Identities = 51/192 (26%), Positives = 65/192 (33%), Gaps = 30/192 (15%)
Query: 3 SVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPSA 62
S SSS SSS +PFP S P P+ + PT S++ S + P PS
Sbjct: 382 SAAASSSSSSSSSSASPFPASQ---ALPSYPHSFPPPT-----SLSVS-NQPPKYTQPSL 432
Query: 63 LAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKWE 122
+ GP LA + P P P +T ++ AH PV+
Sbjct: 433 PSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQS-------TAH--PPVSTHHHHH 483
Query: 123 PSPFQVARAGTPQAQLQL--------PKEGLRPRHSCALGSQEKA---GAPPSQAQLEPF 171
Q + Q Q Q P G P H GS A PS L P+
Sbjct: 484 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFP-HPLEGGSSHHAHPYAMSPSLGSLRPY 542
Query: 172 KPQLQTQAPLHS 183
P P HS
Sbjct: 543 PPGPAHLPPPHS 554
Score = 28.5 bits (62), Expect = 3.6
Identities = 48/227 (21%), Positives = 66/227 (29%), Gaps = 45/227 (19%)
Query: 2 GSVVRSSSRSSSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSPS 61
G V+ GGG P PPP T S + + P T +
Sbjct: 225 GGVLSGPPMGPKGGGAASSVGGPNGGKQHPPP------TTPISVSSSGASGAPPTKPPTT 278
Query: 62 ALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAK--AAHSMEPVAAGD 119
+ G+ P F P PPA RP A + G+ A+ H P A G
Sbjct: 279 PVGGGNLPSAPPPANFPHVT-PNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQ 337
Query: 120 -------------KWEPSPFQV--ARAGTPQAQLQLPKEGLRPRHSCALGSQEKAGA--- 161
PSP + A + P ++ P + A S + +
Sbjct: 338 GMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSAS 397
Query: 162 ---------------PPSQAQLEPFKPQLQTQAPLHS---WGLGRPP 190
PP + +P TQ L S W G PP
Sbjct: 398 PFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPP 444
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 38.1 bits (87), Expect = 0.005
Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 8 SSRSSSGGGRTPFPVSPRHLTAPPP------PNGWAGPTARCRPSMAASISLPTTSGSPS 61
++ +S G T +P P T PPP P G P RP M I LP G+P
Sbjct: 156 AATASIAGAPTQYP--PGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPI 213
Query: 62 ALAAGSCRIGPRSIRFICAALARAPMPPAPRP 93
+ R P I R P PP RP
Sbjct: 214 GMPPPGMRPPPPGI--------RGPPPPGMRP 237
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 38.1 bits (87), Expect = 0.005
Identities = 51/181 (28%), Positives = 73/181 (40%), Gaps = 41/181 (22%)
Query: 27 LTAPP-PPNG----WAGPTARCRPSMAASISLPTTSGSPSALAAGSCRIGPRSIRFICAA 81
LT PP PP+ GP ++ P +A++ LP G L GP + F+ ++
Sbjct: 267 LTPPPLPPSNNLPAHPGPASQ-PPVSSATMHLPLVLGP---LGGAPTVEGPGAPPFLASS 322
Query: 82 L----ARAPMPPAPRPCTTAGKTQRGVTAKAAH--SMEPVAAGDKWEPSPFQVARAGTPQ 135
L A+A PP P P T G+ R A+H S+ P + P+ F++ PQ
Sbjct: 323 LLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQ 382
Query: 136 AQLQLPKEGLRPRHSCALGSQEKAGAPPSQ--AQLEPFKP---------QLQTQAPLHSW 184
PR S+ +A AP Q + EP +P L T P HS
Sbjct: 383 T----------PRR-----SRPRAPAPVPQPFSLPEPSQPILPSVLSLLGLPTPGPSHSD 427
Query: 185 G 185
G
Sbjct: 428 G 428
Score = 30.8 bits (68), Expect = 0.73
Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 25/138 (18%)
Query: 15 GGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPT-----TSGSPSALAAGSCR 69
G +TP PR P P P+ PS+ + + LPT + GS + L + +
Sbjct: 380 GPQTPRRSRPRAPAPVPQPFSLPEPSQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAHL 439
Query: 70 IGPRSIRFICAALARAPMPPAPRPCTTAGKTQR--GVTAKAAHSMEPVAAGDKWEPSPFQ 127
P ++ R P+ P+ P TT+G G A A S PV PSP
Sbjct: 440 PPPPTLSSGSPPQPRHPIQPS-LPGTTSGSLSSVPGAPAPPAASKAPVV------PSPV- 491
Query: 128 VARAGTPQAQLQLPKEGL 145
LQ P EGL
Sbjct: 492 ----------LQSPSEGL 499
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 37.7 bits (86), Expect = 0.006
Identities = 47/172 (27%), Positives = 61/172 (35%), Gaps = 14/172 (8%)
Query: 12 SSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP---SALAAGSC 68
S GRTP VSP PPPP A T+ R SM ++ P P +AL A +
Sbjct: 310 SPATGRTPVFVSPTP-PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAV 368
Query: 69 RIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKW------- 121
P ++ L AP P AP + R + P+ G+
Sbjct: 369 PPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPP 428
Query: 122 -EPSPFQVARAGTPQAQLQL--PKEGLRPRHSCALGSQEKAGAPPSQAQLEP 170
P P R +P L P GL P S A G P +Q+ P
Sbjct: 429 PPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 37.7 bits (86), Expect = 0.006
Identities = 47/172 (27%), Positives = 61/172 (35%), Gaps = 14/172 (8%)
Query: 12 SSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP---SALAAGSC 68
S GRTP VSP PPPP A T+ R SM ++ P P +AL A +
Sbjct: 310 SPATGRTPVFVSPTP-PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAV 368
Query: 69 RIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKW------- 121
P ++ L AP P AP + R + P+ G+
Sbjct: 369 PPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPP 428
Query: 122 -EPSPFQVARAGTPQAQLQL--PKEGLRPRHSCALGSQEKAGAPPSQAQLEP 170
P P R +P L P GL P S A G P +Q+ P
Sbjct: 429 PPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 37.7 bits (86), Expect = 0.006
Identities = 47/172 (27%), Positives = 61/172 (35%), Gaps = 14/172 (8%)
Query: 12 SSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP---SALAAGSC 68
S GRTP VSP PPPP A T+ R SM ++ P P +AL A +
Sbjct: 310 SPATGRTPVFVSPTP-PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAV 368
Query: 69 RIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKW------- 121
P ++ L AP P AP + R + P+ G+
Sbjct: 369 PPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPP 428
Query: 122 -EPSPFQVARAGTPQAQLQL--PKEGLRPRHSCALGSQEKAGAPPSQAQLEP 170
P P R +P L P GL P S A G P +Q+ P
Sbjct: 429 PPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 37.7 bits (86), Expect = 0.006
Identities = 47/172 (27%), Positives = 61/172 (35%), Gaps = 14/172 (8%)
Query: 12 SSGGGRTPFPVSPRHLTAPPPPNGWAGPTARCRPSMAASISLPTTSGSP---SALAAGSC 68
S GRTP VSP PPPP A T+ R SM ++ P P +AL A +
Sbjct: 310 SPATGRTPVFVSPTP-PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAV 368
Query: 69 RIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAGDKW------- 121
P ++ L AP P AP + R + P+ G+
Sbjct: 369 PPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPP 428
Query: 122 -EPSPFQVARAGTPQAQLQL--PKEGLRPRHSCALGSQEKAGAPPSQAQLEP 170
P P R +P L P GL P S A G P +Q+ P
Sbjct: 429 PPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,273,992
Number of Sequences: 37866
Number of extensions: 636228
Number of successful extensions: 3860
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 411
Number of HSP's that attempted gapping in prelim test: 3389
Number of HSP's gapped (non-prelim): 805
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.