Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169212132
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169212132 PREDICTED: CMT1A duplicated region transcript
15-like 2 [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169212132 PREDICTED: CMT1A duplicated region transcript 15-li... 244 1e-65
gi|89041269 PREDICTED: CMT1A duplicated region transcript 15-lik... 244 1e-65
gi|169211692 PREDICTED: CMT1A duplicated region transcript 15-li... 239 5e-64
gi|89041220 PREDICTED: CMT1A duplicated region transcript 15-lik... 239 5e-64
gi|32171221 GRP1 (general receptor for phosphoinositides 1)-asso... 39 9e-04
gi|126090909 engrailed homeobox 1 [Homo sapiens] 38 0.002
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 38 0.002
gi|89886484 XK, Kell blood group complex subunit-related family,... 37 0.004
gi|57864582 hornerin [Homo sapiens] 36 0.006
gi|169211520 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|109255251 loricrin [Homo sapiens] 35 0.017
gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo... 34 0.022
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 34 0.022
gi|122937321 UNC homeobox [Homo sapiens] 34 0.022
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa... 34 0.022
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 34 0.029
gi|23957680 ral guanine nucleotide dissociation stimulator-like ... 33 0.038
gi|239756524 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo ... 33 0.049
gi|239745462 PREDICTED: hypothetical protein XP_002343470 [Homo ... 33 0.049
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 33 0.049
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 33 0.064
gi|153792074 proline rich 12 [Homo sapiens] 33 0.064
gi|119395750 keratin 1 [Homo sapiens] 32 0.11
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.11
gi|113419362 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|113418886 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|113419893 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|24497460 Shaw-related voltage-gated potassium channel protein... 32 0.11
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 32 0.14
>gi|169212132 PREDICTED: CMT1A duplicated region transcript 15-like
2 [Homo sapiens]
Length = 110
Score = 244 bits (622), Expect = 1e-65
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGG 60
MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGG
Sbjct: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGG 60
Query: 61 TDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
TDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA
Sbjct: 61 TDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
>gi|89041269 PREDICTED: CMT1A duplicated region transcript 15-like 2
[Homo sapiens]
Length = 110
Score = 244 bits (622), Expect = 1e-65
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGG 60
MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGG
Sbjct: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGG 60
Query: 61 TDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
TDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA
Sbjct: 61 TDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
>gi|169211692 PREDICTED: CMT1A duplicated region transcript 15-like
1 [Homo sapiens]
Length = 110
Score = 239 bits (609), Expect = 5e-64
Identities = 107/110 (97%), Positives = 108/110 (98%)
Query: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGG 60
MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHT DPIGAAS HCPCPGGDSGAHGG
Sbjct: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG 60
Query: 61 TDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
TDTCSWS+RRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA
Sbjct: 61 TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
>gi|89041220 PREDICTED: CMT1A duplicated region transcript 15-like 1
[Homo sapiens]
Length = 110
Score = 239 bits (609), Expect = 5e-64
Identities = 107/110 (97%), Positives = 108/110 (98%)
Query: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGG 60
MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHT DPIGAAS HCPCPGGDSGAHGG
Sbjct: 1 MPKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGG 60
Query: 61 TDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
TDTCSWS+RRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA
Sbjct: 61 TDTCSWSIRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
>gi|32171221 GRP1 (general receptor for phosphoinositides
1)-associated scaffold protein [Homo sapiens]
Length = 395
Score = 38.9 bits (89), Expect = 9e-04
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 5 AHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTC 64
A P P P + PG P GP PG +AS C PGG G GG
Sbjct: 297 ALPPPPPPA---RAFGPGPAETPAVGPG-PGPRAALSRSASVRCAGPGGGGG--GGAPGA 350
Query: 65 SWSVRRHSSTCGTGCR 80
W+ R + CG G R
Sbjct: 351 LWTEAREQALCGPGLR 366
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 38.1 bits (87), Expect = 0.002
Identities = 39/122 (31%), Positives = 44/122 (36%), Gaps = 17/122 (13%)
Query: 3 KKAHPSPQTPVALCKKAHPG-------TTGQPGAG--PSWPGHTRDPIGAAS------AH 47
KK P PQ VA + G GQ AG P P TR P GAAS A+
Sbjct: 118 KKEQPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAP-GAASLLCAPDAN 176
Query: 48 CPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQP 107
C P G A G ++ A A+ A GGGGS G P
Sbjct: 177 CGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGG-GAGSP 235
Query: 108 GA 109
GA
Sbjct: 236 GA 237
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 37.7 bits (86), Expect = 0.002
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 7 PSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSW 66
P + P L P G PGA PS P A S+ PGG + A + + +
Sbjct: 31 PRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSAS 90
Query: 67 SVRRHSSTCGTG-------------CRAKASMG------RAPSRESAGGGGS 99
S SS+ +G + A++G RA ES GGGGS
Sbjct: 91 SSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLRRFRAVFGESGGGGGS 142
>gi|89886484 XK, Kell blood group complex subunit-related family,
member 6 isoform b [Homo sapiens]
Length = 641
Score = 36.6 bits (83), Expect = 0.004
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 50 CPGGDSGAHGGTDTCSWSVRR--HSSTCGTGCRA---KASMGRAPSRESAGGGGSSS-QG 103
C GG G+ G ++ S + ++S+C GCR+ ++ +GR P R +A GG Q
Sbjct: 39 CGGGGDGSEPG-ESSSMHICHCCNTSSCYWGCRSACLRSLLGRKPRRSAAADGGDQPLQP 97
Query: 104 PAQPGA 109
PA PGA
Sbjct: 98 PAAPGA 103
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 36.2 bits (82), Expect = 0.006
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 20 HPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGA--------HGGTDTCSWSVRRH 71
H + GQ G+G W + P G+ S G SG+ HG + S R+H
Sbjct: 671 HSSSYGQHGSGSGWSS-SNGPHGSVSGQSSGFGHKSGSGQSSGYSQHGSGSSHSSGYRKH 729
Query: 72 SSTCGTGCRAK---ASMGRAPSRESAGGGGSSSQGPAQPGA 109
S G R++ +S G + S G G S G + G+
Sbjct: 730 GSRSGQSSRSEQHGSSSGLSSSYGQHGSGSHQSSGHGRQGS 770
Score = 28.9 bits (63), Expect = 0.93
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 20 HPGTTGQPGAGPSWPGHT-RDPIGAASA-----HCPCPGGDSGA--HGGTDTCSWSVRRH 71
H + GQ G+G W + R G+ + H SG HG S S +H
Sbjct: 1371 HSSSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGCTQHGSGSGHSSSYEQH 1430
Query: 72 SSTCGTGCRAK---ASMGRAPSRESAGGGGSSSQGPAQPGA 109
S G R + +S G + S G G S G Q G+
Sbjct: 1431 GSRSGQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGS 1471
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 56 GAHGGTDTCSWSVRRHSSTCGTGCRAKASMGR--APSRESA-------GGGGSSSQGPAQ 106
G HG S RH S G+G S GR + SR+S+ G G SSS+GP +
Sbjct: 518 GQHGSGSRQSLGHSRHGS--GSGQSPSPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYE 575
Query: 107 PGA 109
G+
Sbjct: 576 SGS 578
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 20 HPGTTGQPGAGPSWPGHT-RDPIGAASA-----HCPCPGGDSG--AHGGTDTCSWSVRRH 71
H + GQ G+G W + R G+ + H SG HG S S +H
Sbjct: 1841 HSSSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGSGHSSSYEQH 1900
Query: 72 SSTCGTGCRAK---ASMGRAPSRESAGGGGSSSQGPAQPGA 109
S G R + +S G + S G G S G Q G+
Sbjct: 1901 GSRSGQSSRGEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGS 1941
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 20 HPGTTGQPGAGPSWPGHT-RDPIGAASA-----HCPCPGGDSG--AHGGTDTCSWSVRRH 71
H + GQ G+G W + R G+ + H SG HG S S +H
Sbjct: 2311 HSSSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGSGHSSSYEQH 2370
Query: 72 SSTCGTGCRAK---ASMGRAPSRESAGGGGSSSQGPAQPGA 109
S G R + +S G + S G G S G Q G+
Sbjct: 2371 GSRSGQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGS 2411
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 55 SGAHGGTDTCSWSVRRHSS----TCGTGCRAKASMGRAPS----RESAGGGGSSSQGPAQ 106
S HG + S S +H S + G G S G++PS R +G G SSS GP +
Sbjct: 970 SEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGS-GQSPSPSRGRHGSGSGQSSSYGPYR 1028
Query: 107 PGA 109
G+
Sbjct: 1029 SGS 1031
Score = 27.7 bits (60), Expect = 2.1
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 24/111 (21%)
Query: 23 TTGQPGAG---PSWPGHTRDPIGAASAHCPCPGGDS-----GAHGGTDTCSWSVRRHSST 74
++GQ G G S GH G +S++ G G HG S RH S+
Sbjct: 2093 SSGQHGPGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSS 2152
Query: 75 CGT---------GCRAKASMGR-------APSRESAGGGGSSSQGPAQPGA 109
G+ G R + GR +PSR G G S Q G+
Sbjct: 2153 SGSSSRYGQHGSGSRQSSGHGRQGSGSGHSPSRGRHGSGSGHSSSHGQHGS 2203
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 58 HGGTDTCSWSVRRHSS----TCGTGCRAKASMGRAPS----RESAGGGGSSSQGPAQPGA 109
HG + S S +H S + G G S G++PS R +G G SSS GP G+
Sbjct: 1913 HGSSSGSSSSYGQHGSGSRQSLGHGQHGSGS-GQSPSPSRGRHGSGSGQSSSYGPYGSGS 1971
Score = 26.6 bits (57), Expect = 4.6
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 20 HPGTTGQPGAGP---SWPGHTRDPIGAASAHCPCPGGDS--GAHGGTDTCSWSVRRHSST 74
H T GQ G+ S G G +S+H G S +G + S H
Sbjct: 2012 HSSTHGQHGSASGQSSSCGQHGASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQR 2071
Query: 75 CGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPG 108
G+G R S GR +G G SSS G PG
Sbjct: 2072 -GSGSRQSPSYGR----HGSGSGRSSSSGQHGPG 2100
Score = 26.2 bits (56), Expect = 6.0
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 35 GHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCG--TGC-RAKASMGRAPSR 91
GH G +S + G HG + S + +H ST G + C + A+ G++ S
Sbjct: 585 GHQESRSGQSSGY--------GQHGSSSGHSSTHGQHGSTSGQSSSCGQHGATSGQSSSH 636
Query: 92 ESAGGGGSSSQGPAQPGA 109
G G S S Q G+
Sbjct: 637 GQHGSGSSQSSRYGQQGS 654
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 47 HCPCPGGDSG--AHGGTDTCSWSVRRHSSTCGTGCRAK---ASMGRAPSRESAGGGGSSS 101
H G SG HG S S +H S G R++ +S G + S G G S
Sbjct: 934 HKSSSGQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRSEQHGSSSGSSSSYGQHGSGSRQS 993
Query: 102 QGPAQPGA 109
G Q G+
Sbjct: 994 LGHGQHGS 1001
>gi|169211520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 34.7 bits (78), Expect = 0.017
Identities = 34/105 (32%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 5 AHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTC 64
AH + + L P TG PG P G R PI A A P PG +G G +
Sbjct: 79 AHKLYRHDLGLRSVGGPCDTGSPGPAP---GRCR-PIAARLAARPAPGTAAGRGGCCEAL 134
Query: 65 SWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGA 109
GT R R+P+ ES G G S GPA A
Sbjct: 135 PAE--------GTCRRLVPLHPRSPAGESGPGRGGGSCGPAGTAA 171
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 34.7 bits (78), Expect = 0.017
Identities = 37/124 (29%), Positives = 49/124 (39%), Gaps = 25/124 (20%)
Query: 3 KKAHPSPQTPVALCKKAHPGTTG--QPGAGPSWPGHTRDPIGAASAHCP----------- 49
+K P+PQ PV K + G G G G + G G++ + C
Sbjct: 4 QKKQPTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGG 63
Query: 50 CPGGDSGAHGGTD----------TCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGS 99
C GG SG GG + +S SS G+GC + S G S+GGGGS
Sbjct: 64 CGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFS--SGGGGSGCFSSGGGGS 121
Query: 100 SSQG 103
S G
Sbjct: 122 SGGG 125
Score = 32.3 bits (72), Expect = 0.084
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 31 PSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKASMGRAPS 90
PS+ G + G+ + C GG G+ G C SS G+GC
Sbjct: 223 PSYGGGSSGGGGSGGSGCFSSGGGGGSSG----CGGG----SSGIGSGCIISGGGSVCGG 274
Query: 91 RESAGGGGSSSQGPAQPG 108
S GGGG SS G + G
Sbjct: 275 GSSGGGGGGSSVGGSGSG 292
Score = 30.0 bits (66), Expect = 0.42
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 28 GAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKAS--- 84
G G S G G + C GG G+ GG C S SS G+GC +
Sbjct: 93 GGGSSGGGSGCFSSGGGGSGCFSSGG-GGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGF 151
Query: 85 MGRAPSRESAGG---GGSSSQG 103
G+A +S GG GGSS G
Sbjct: 152 SGQAVQCQSYGGVSSGGSSGGG 173
>gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo
sapiens]
Length = 423
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 8 SPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTC 64
+PQTP A PGT G G GP G ++ I C SG H G TC
Sbjct: 51 TPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECV----VCGDKSSGKHYGQFTC 103
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 34.3 bits (77), Expect = 0.022
Identities = 30/108 (27%), Positives = 37/108 (34%), Gaps = 5/108 (4%)
Query: 5 AHPSPQTPVALCKKAHPGTTGQPGAGP---SWPGHTRDPIGAASAHCPCPGGDSGAHGGT 61
+HP + P LC HPG P A S AA+A + GG+
Sbjct: 326 SHPYSR-PELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGS 384
Query: 62 DTCSW-SVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPG 108
CS S S A A++G GGGG G A G
Sbjct: 385 APCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAG 432
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 34.3 bits (77), Expect = 0.022
Identities = 31/117 (26%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 2 PKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCP--------GG 53
PK A P+P P A +A G PG P R P AS P P
Sbjct: 406 PKDAPPAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAVASPGAPAPAPAPFRDLAS 465
Query: 54 DSGAHGGTDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
+ GG C+ + T G A R R + ++ G +PGAA
Sbjct: 466 AAATEGGGGDCA-----DAGTAGPAPPPPAPSPRPGPRPPSPAEEPATCGVPEPGAA 517
>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
sapiens]
Length = 685
Score = 34.3 bits (77), Expect = 0.022
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 2 PKKAHPSPQ-TPVALCKKA---HPGTT-----GQPGAGPSWPGHTRDPIGAASAHCPCPG 52
P + P P TP K PG++ GQP G + P + P+ G
Sbjct: 348 PSHSRPGPMVTPHNKAKSPGVRQPGSSSSSAPGQPSTGVARPTVSSGPVPRRQNGSSSSG 407
Query: 53 GD---SGAHGGTDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGS-----SSQGP 104
+ SG+ T+ + S R S TCG G A +S G P R +G S SS+GP
Sbjct: 408 PERSISGSKKPTNDSNPSRRTVSGTCGPGQPASSSGG--PGRPISGSVSSARPLGSSRGP 465
Query: 105 AQP 107
+P
Sbjct: 466 GRP 468
Score = 26.2 bits (56), Expect = 6.0
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 5 AHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTC 64
++PS +T C GQP + PG PI + S P G S G +
Sbjct: 422 SNPSRRTVSGTCGP------GQPASSSGGPGR---PI-SGSVSSARPLGSSRGPGRPVSS 471
Query: 65 SWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQP 107
+RR S G R+ + GR+ S G S+ P +P
Sbjct: 472 PHELRRPVSGLGPPGRSVSGPGRSISGSIPAGRTVSNSVPGRP 514
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 33.9 bits (76), Expect = 0.029
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 25 GQPGAGPSWPGHTR-----DPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGC 79
G G GP G R +P G PGG + GGT G G
Sbjct: 5 GPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGT--------------GGGK 50
Query: 80 RAKASMGRAPSRESAGG--GGSSSQGPAQPGA 109
+ +MG S+GG GGS G PGA
Sbjct: 51 ASVGAMGGGVGASSSGGGPGGSGGGGSGGPGA 82
>gi|23957680 ral guanine nucleotide dissociation stimulator-like 4
[Homo sapiens]
Length = 473
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 9 PQTPVALCKKAH----PGTTGQPGAGPSWPGHTRDPIGAASAHCPCPG 52
P++P AL + PG PG GP PG +P A + CPC G
Sbjct: 156 PESPAALGPPGYLHSAPGPAPAPGEGPP-PGTVLEPQSAPESSCPCRG 202
>gi|239756524 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 25 GQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKAS 84
G+ G GP G + HC P + S +V R TCG CR
Sbjct: 27 GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
Query: 85 MGR--------APSRESAGGGGSSSQGPAQPGAA 110
G P G G SS GP GAA
Sbjct: 77 KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
>gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo
sapiens]
Length = 176
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 25 GQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKAS 84
G+ G GP G + HC P + S +V R TCG CR
Sbjct: 27 GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
Query: 85 MGR--------APSRESAGGGGSSSQGPAQPGAA 110
G P G G SS GP GAA
Sbjct: 77 KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
>gi|239745462 PREDICTED: hypothetical protein XP_002343470 [Homo
sapiens]
Length = 176
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 25 GQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKAS 84
G+ G GP G + HC P + S +V R TCG CR
Sbjct: 27 GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
Query: 85 MGR--------APSRESAGGGGSSSQGPAQPGAA 110
G P G G SS GP GAA
Sbjct: 77 KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor
[Homo sapiens]
Length = 1584
Score = 33.1 bits (74), Expect = 0.049
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 30/125 (24%)
Query: 3 KKAHPSP--QTPVALCKKAHPGTTGQPGAGPSWPGHT---RDPIGAASAHCPCP----GG 53
+ +HP QTP A G G P AGP P RD + +C G
Sbjct: 201 RSSHPCGIMQTPCACLG----GEAGGPAAGPLAPRGDVCLRDAVAGGPENCLTSLTQDRG 256
Query: 54 DSGAHGG----------TDTCSWSVRRHSSTC-------GTGCRAKASMGRAPSRESAGG 96
GA GG T C ++ + TC G GC GR +RE+ G
Sbjct: 257 GHGATGGWKLWSLWGECTRDCGGGLQTRTRTCLPAPGVEGGGCEGVLEEGRQCNREACGP 316
Query: 97 GGSSS 101
G +S
Sbjct: 317 AGRTS 321
Score = 32.3 bits (72), Expect = 0.084
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 18/109 (16%)
Query: 7 PSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAA-SAHCPCPGGDSG--------- 56
P+PQT ++ P + G W TR + ++ S C P +
Sbjct: 348 PAPQTGDPAAEEWSPWSVCSSTCGEGWQTRTRFCVSSSYSTQCSGPLREQRLCNNSAVCP 407
Query: 57 AHGGTDTCS-WSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGP 104
HG D S WS+ SSTCG G R + R P GG+ +GP
Sbjct: 408 VHGAWDEWSPWSLC--SSTCGRGFRDRTRTCRPPQ-----FGGNPCEGP 449
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 32.7 bits (73), Expect = 0.064
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 21 PGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGC 79
PG TG PG + + C CPG + H T TCS + H +C C
Sbjct: 1151 PGFTGSGCEQACPPGSFGED---CAQMCQCPGENPACHPATGTCSCAAGYHGPSCQQRC 1206
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 35 GHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVR---RHSSTCGTGCRAKASMGRAPSR 91
G T DP+ S HC CP G +G + VR RHS C G GR
Sbjct: 1051 GGTCDPV---SGHCACPEGWAGLACEKECLPRDVRAGCRHSGGCLNGGLCDPHTGRCLC- 1106
Query: 92 ESAGGGGSSSQGPAQPG 108
AG G Q P G
Sbjct: 1107 -PAGWTGDKCQSPCLRG 1122
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 32.7 bits (73), Expect = 0.064
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 2 PKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGT 61
P KA PS T A + P G GAG G+ PI + + GG A GG
Sbjct: 346 PSKAGPSGATAGASGRATGPEAAGGGGAGGGGGGYR--PIIQSPGYKTGKGGYGAAAGGA 403
Query: 62 DTCSWSVRRHSSTCGT--GCRAKASMGRAPSRESAGGGGSSSQGPAQP 107
+ C + G A + G+A AGG G + P QP
Sbjct: 404 TRPPPPRSTATPKCQSLGGPAAAYATGKA---SGAGGAGGQAYSPGQP 448
Score = 27.3 bits (59), Expect = 2.7
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 31/108 (28%)
Query: 2 PKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWP--GHTRD----PIGAASAHCPCPGGDS 55
P A P P P A + + G S+P GH + P+G P PG
Sbjct: 295 PASAQPPPPPPPAHALQHYLS------CGGSYPSMGHRANLACSPLGGGE---PSPGAGE 345
Query: 56 GAHGGTDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQG 103
+ G +G A AS GRA E+AGGGG+ G
Sbjct: 346 PSKAGP---------------SGATAGAS-GRATGPEAAGGGGAGGGG 377
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 32.0 bits (71), Expect = 0.11
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 22 GTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHG--GTDTCSWSVRRHSSTCGTGC 79
G G G+G S G G+ GG G HG G+ + S R S G G
Sbjct: 547 GGRGSYGSGGSSYGSGGGSYGS--------GGGGGGHGSYGSGSSSGGYRGGSGGGGGGS 598
Query: 80 RAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
G S S GG GSSS G G +
Sbjct: 599 SGGRGSGGGSSGGSIGGRGSSSGGVKSSGGS 629
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 32.0 bits (71), Expect = 0.11
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 7 PSPQTPVALCKKAHPGTTGQPG-AGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCS 65
P +P +A P TG P A P+ T P G+ S P + + G+ + +
Sbjct: 434 PPRASPTGTPPRASP--TGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRA 491
Query: 66 WSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPAQPGAA 110
R S T + AS+ R PSR S S++ P A
Sbjct: 492 SLTRTPSRASLTKMESTASITRTPSRASPTWTPSTASPTGSPSTA 536
Score = 29.3 bits (64), Expect = 0.71
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 2 PKKAHPS---PQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAH 58
P +A P+ +T + T P A P+ P G S P + +
Sbjct: 407 PPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTGTQSTASP 466
Query: 59 GGTDTCSWSVRRHSSTCGTGCRAKASMGRAPSRES 93
G+ + + S+ TG ++AS+ R PSR S
Sbjct: 467 TGSPSTASPTGSPSTASPTGSPSRASLTRTPSRAS 501
>gi|113419362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 32.0 bits (71), Expect = 0.11
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 1 MPKKAHPS--PQTPVALCKKAHPGTTGQ-------------PGAGPSWPGHTRDPIGAAS 45
+P++ P+ P +PV LC A G G+ P P+ P R+ + +
Sbjct: 19 LPRECFPASGPGSPV-LCAAALSGGPGRAAGSAIGRGAHLSPSRPPAAPPPRREVLSSPG 77
Query: 46 AHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPA 105
GGD+ +W + S CG G RA A+ G S +A GP+
Sbjct: 78 CCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPS 137
Query: 106 QPG 108
G
Sbjct: 138 GLG 140
>gi|113418886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 32.0 bits (71), Expect = 0.11
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 1 MPKKAHPS--PQTPVALCKKAHPGTTGQ-------------PGAGPSWPGHTRDPIGAAS 45
+P++ P+ P +PV LC A G G+ P P+ P R+ + +
Sbjct: 19 LPRECFPASGPGSPV-LCAAALSGGPGRAAGSAIGRGAHLSPSRPPAAPPPRREVLSSPG 77
Query: 46 AHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPA 105
GGD+ +W + S CG G RA A+ G S +A GP+
Sbjct: 78 CCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPS 137
Query: 106 QPG 108
G
Sbjct: 138 GLG 140
>gi|113419893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 32.0 bits (71), Expect = 0.11
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 1 MPKKAHPS--PQTPVALCKKAHPGTTGQ-------------PGAGPSWPGHTRDPIGAAS 45
+P++ P+ P +PV LC A G G+ P P+ P R+ + +
Sbjct: 19 LPRECFPASGPGSPV-LCAAALSGGPGRAAGSAIGRGAHLSPSRPPAAPPPRREVLSSPG 77
Query: 46 AHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKASMGRAPSRESAGGGGSSSQGPA 105
GGD+ +W + S CG G RA A+ G S +A GP+
Sbjct: 78 CCAALAGGDTNGEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQDPLPRHVGPS 137
Query: 106 QPG 108
G
Sbjct: 138 GLG 140
>gi|24497460 Shaw-related voltage-gated potassium channel protein
3 [Homo sapiens]
Length = 757
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 2 PKKAHPSPQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCP-CPGGDSGAHGG 60
P ++ P P P + A PG P A P+ P R P + CP P G HGG
Sbjct: 27 PPESPPPPPLPPQQQQPAQPG----PAASPAGPPAPRGPGDRRAEPCPGLPAAAMGRHGG 82
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 9 PQTPVALCKKAHPGTTGQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHG 59
P P C++ PG GQPG P +PG P G P G +G G
Sbjct: 821 PGPPGHSCERGAPGIPGQPGL-PGYPGSPGAPGGKGQPGDVGPPGPAGMKG 870
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,763,932
Number of Sequences: 37866
Number of extensions: 406449
Number of successful extensions: 2477
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 270
Number of HSP's that attempted gapping in prelim test: 2139
Number of HSP's gapped (non-prelim): 588
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.