Search of human proteins with 169211979

Search of human proteins with 169211979

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169211979 PREDICTED: hypothetical protein [Homo sapiens]
         (168 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169211979 PREDICTED: hypothetical protein [Homo sapiens]           359   e-100
gi|239740940 PREDICTED: hypothetical protein XP_002344108 [Homo ...   349   7e-97
gi|38788260 bromodomain PHD finger transcription factor isoform ...   142   1e-34
gi|38788274 bromodomain PHD finger transcription factor isoform ...   142   1e-34
gi|117190342 PHD finger protein 2 [Homo sapiens]                       53   1e-07
gi|32698700 PHD finger protein 8 [Homo sapiens]                        51   5e-07
gi|90093355 jumonji C domain containing histone demethylase 1 ho...    49   2e-06
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]       48   5e-06
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]       48   5e-06
gi|7662018 PHD finger protein 3 [Homo sapiens]                         43   1e-04
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]       43   1e-04
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]       43   1e-04
gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens]       43   1e-04
gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens]       43   1e-04
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho...    42   3e-04
gi|153791535 general control of amino acid synthesis 5-like 2 [H...    39   0.003
gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens]          36   0.018
gi|47419911 transcriptional intermediary factor 1 alpha isoform ...    36   0.018
gi|47419909 transcriptional intermediary factor 1 alpha isoform ...    36   0.018
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]              35   0.030
gi|74027251 tripartite motif-containing 33 protein isoform beta ...    35   0.030
gi|74027249 tripartite motif-containing 33 protein isoform alpha...    35   0.030
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]      35   0.040
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho...    34   0.052
gi|18034775 PHD finger protein 20 [Homo sapiens]                       33   0.088
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [...    33   0.15 
gi|166795250 kinesin family member 2C [Homo sapiens]                   33   0.15 
gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]      32   0.20 
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa...    32   0.26 
gi|7657218 bromodomain-containing protein 4 isoform short [Homo ...    32   0.33 

>gi|169211979 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 168

 Score =  359 bits (922), Expect = e-100
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MKQGREDRFKYHAAQNDNYIVIFIVNTFRFYIGCDLCTNWYYGECVGIAEKEAKKMDVYI 60
           MKQGREDRFKYHAAQNDNYIVIFIVNTFRFYIGCDLCTNWYYGECVGIAEKEAKKMDVYI
Sbjct: 1   MKQGREDRFKYHAAQNDNYIVIFIVNTFRFYIGCDLCTNWYYGECVGIAEKEAKKMDVYI 60

Query: 61  CNDCKQAQEGSSEELYCICRTPAVTSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDDEEL 120
           CNDCKQAQEGSSEELYCICRTPAVTSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDDEEL
Sbjct: 61  CNDCKQAQEGSSEELYCICRTPAVTSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDDEEL 120

Query: 121 KRAHKMARPFLEPVDPNDAPDYYGVIKEPVGTHELNLKFFQKSQCIFY 168
           KRAHKMARPFLEPVDPNDAPDYYGVIKEPVGTHELNLKFFQKSQCIFY
Sbjct: 121 KRAHKMARPFLEPVDPNDAPDYYGVIKEPVGTHELNLKFFQKSQCIFY 168


>gi|239740940 PREDICTED: hypothetical protein XP_002344108 [Homo
           sapiens]
          Length = 168

 Score =  349 bits (895), Expect = 7e-97
 Identities = 163/168 (97%), Positives = 164/168 (97%)

Query: 1   MKQGREDRFKYHAAQNDNYIVIFIVNTFRFYIGCDLCTNWYYGECVGIAEKEAKKMDVYI 60
           MKQGREDRFKYHAAQNDNYIVIF+VNT RFYIGCDLCTNWYYGECVGIAEKEAKKMDVYI
Sbjct: 1   MKQGREDRFKYHAAQNDNYIVIFVVNTSRFYIGCDLCTNWYYGECVGIAEKEAKKMDVYI 60

Query: 61  CNDCKQAQEGSSEELYCICRTPAVTSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDDEEL 120
           CNDCK AQE SSEELYCICRTPAVTSEAELIDEYVCPQCQSTED MTVLTPLTEKDDEEL
Sbjct: 61  CNDCKWAQEDSSEELYCICRTPAVTSEAELIDEYVCPQCQSTEDVMTVLTPLTEKDDEEL 120

Query: 121 KRAHKMARPFLEPVDPNDAPDYYGVIKEPVGTHELNLKFFQKSQCIFY 168
           KRAHKMARPFLEPVDPNDAPDYYGVIKEPVGTHELNLKFFQKSQCIFY
Sbjct: 121 KRAHKMARPFLEPVDPNDAPDYYGVIKEPVGTHELNLKFFQKSQCIFY 168


>gi|38788260 bromodomain PHD finger transcription factor isoform 2
            [Homo sapiens]
          Length = 2903

 Score =  142 bits (359), Expect = 1e-34
 Identities = 76/128 (59%), Positives = 80/128 (62%), Gaps = 41/128 (32%)

Query: 29   RFYIGCDLCTNWYYGECVGIAEKEAKKMDVYICNDCKQAQEGSSEELYCICRTPAVTSEA 88
            +FYIGCD C NWY+G CVGI +                                   SEA
Sbjct: 2737 KFYIGCDRCQNWYHGRCVGILQ-----------------------------------SEA 2761

Query: 89   ELIDEYVCPQCQSTEDAMTVLTPLTEKDDEELKR------AHKMARPFLEPVDPNDAPDY 142
            ELIDEYVCPQCQSTEDAMTVLTPLTEKD E LKR      AHKMA PFLEPVDPNDAPDY
Sbjct: 2762 ELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDY 2821

Query: 143  YGVIKEPV 150
            YGVIKEP+
Sbjct: 2822 YGVIKEPM 2829


>gi|38788274 bromodomain PHD finger transcription factor isoform 1
            [Homo sapiens]
          Length = 2920

 Score =  142 bits (359), Expect = 1e-34
 Identities = 76/128 (59%), Positives = 80/128 (62%), Gaps = 41/128 (32%)

Query: 29   RFYIGCDLCTNWYYGECVGIAEKEAKKMDVYICNDCKQAQEGSSEELYCICRTPAVTSEA 88
            +FYIGCD C NWY+G CVGI +                                   SEA
Sbjct: 2754 KFYIGCDRCQNWYHGRCVGILQ-----------------------------------SEA 2778

Query: 89   ELIDEYVCPQCQSTEDAMTVLTPLTEKDDEELKR------AHKMARPFLEPVDPNDAPDY 142
            ELIDEYVCPQCQSTEDAMTVLTPLTEKD E LKR      AHKMA PFLEPVDPNDAPDY
Sbjct: 2779 ELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDY 2838

Query: 143  YGVIKEPV 150
            YGVIKEP+
Sbjct: 2839 YGVIKEPM 2846


>gi|117190342 PHD finger protein 2 [Homo sapiens]
          Length = 1096

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 29 RFYIGCDLCTNWYYGECVGIAEKEAKKMDVYICNDCKQAQEGSS 72
          RF I CD C +W++G CVG+ E+EA  +D+Y C +C++    S+
Sbjct: 18 RFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKST 61


>gi|32698700 PHD finger protein 8 [Homo sapiens]
          Length = 1024

 Score = 50.8 bits (120), Expect = 5e-07
 Identities = 17/37 (45%), Positives = 28/37 (75%)

Query: 29 RFYIGCDLCTNWYYGECVGIAEKEAKKMDVYICNDCK 65
          RF I CD+C +W++G CVG+ E++A  +D+Y C +C+
Sbjct: 18 RFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCE 54


>gi|90093355 jumonji C domain containing histone demethylase 1
          homolog D [Homo sapiens]
          Length = 941

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 29 RFYIGCDLCTNWYYGECVGIAEKEAKKMDVYICNDC 64
          RF I CD+C +W++G CVG+ E  A  +D+Y C +C
Sbjct: 50 RFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85


>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
          Length = 660

 Score = 47.8 bits (112), Expect = 5e-06
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 30 FYIGCDLCTNWYYGECVGIAEKEAKKMDVYICNDCKQ 66
          F IGCD C  W++G+C+ I EK AK +  + C +C++
Sbjct: 39 FMIGCDNCNEWFHGDCIRITEKMAKAIREWYCRECRE 75


>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
          Length = 656

 Score = 47.8 bits (112), Expect = 5e-06
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 30 FYIGCDLCTNWYYGECVGIAEKEAKKMDVYICNDCKQ 66
          F IGCD C  W++G+C+ I EK AK +  + C +C++
Sbjct: 39 FMIGCDNCNEWFHGDCIRITEKMAKAIREWYCRECRE 75


>gi|7662018 PHD finger protein 3 [Homo sapiens]
          Length = 2039

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 29  RFYIGCDLCTNWYYGECVGIAEKEAKKM----DVYICNDCKQAQEGSSEEL 75
           RF +GC  C +W++G+CVG++  +A++M      Y+C  C   ++  +E L
Sbjct: 730 RFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVKCCAEEDKKTEIL 780


>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
          Length = 2240

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)

Query: 29  RFYIGCDLCTNWYYGECVGIAEKEAKKM----DVYICNDCK--QAQEGSSEE 74
           RF I CD C  W++G+CVGI+E   + +    + YIC +C   Q Q+ +  E
Sbjct: 280 RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILQVQDETHSE 331


>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
          Length = 1189

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)

Query: 29  RFYIGCDLCTNWYYGECVGIAEKEAKKM----DVYICNDCK--QAQEGSSEE 74
           RF I CD C  W++G+CVGI+E   + +    + YIC +C   Q Q+ +  E
Sbjct: 280 RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILQVQDETHSE 331


>gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens]
          Length = 562

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)

Query: 29  RFYIGCDLCTNWYYGECVGIAEKEAKKM----DVYICNDCK--QAQEGSSEE 74
           RF I CD C  W++G+CVGI+E   + +    + YIC +C   Q Q+ +  E
Sbjct: 280 RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILQVQDETHSE 331


>gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens]
          Length = 562

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)

Query: 29  RFYIGCDLCTNWYYGECVGIAEKEAKKM----DVYICNDCK--QAQEGSSEE 74
           RF I CD C  W++G+CVGI+E   + +    + YIC +C   Q Q+ +  E
Sbjct: 280 RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILQVQDETHSE 331


>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
           sapiens]
          Length = 1484

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 119 ELKRAHKMARPFLEPVDPNDAPDYYGVIKEPVGTHELNLK 158
           ++ +AHK + PFLEPVD + AP+YY +IK P+    +  K
Sbjct: 448 DVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKK 487


>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
           sapiens]
          Length = 837

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 122 RAHKMARPFLEPVDPNDAPDYYGVIKEPV 150
           ++H  A PF+EPV  ++APDYY VI+ P+
Sbjct: 745 KSHPSAWPFMEPVKKSEAPDYYEVIRFPI 773


>gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 35.8 bits (81), Expect = 0.018
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 47   GIAEKEAKKMD---VYICNDCKQAQEGSSEELYCICRTPAV-TSEAELIDEYVCPQCQST 102
            G A++E+K  D   VY+     Q   G  ++ + I  TP V T  +      +    Q  
Sbjct: 1041 GEAQQESKGEDQGEVYVSEMEDQPPSGECDDAFNIKETPLVDTLFSHATSSKLTDLSQDD 1100

Query: 103  EDAMTVLTPLTEKDDEELKRAHKMARPFLEPVDPNDAPDYYGVIKEPV 150
                 +L   T     ++  +H+ + PFL+PV    AP Y  V+K P+
Sbjct: 1101 PVQDHLLFKKTLLPVWKMIASHRFSSPFLKPVSERQAPGYKDVVKRPM 1148



 Score = 29.3 bits (64), Expect = 1.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 124 HKMARPFLEPVDPNDAPDYYGVIKEPV 150
           H+ A  FL+PV  + AP Y+ +++ P+
Sbjct: 726 HRYANVFLQPVTDDIAPGYHSIVQRPM 752


>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
           [Homo sapiens]
          Length = 1050

 Score = 35.8 bits (81), Expect = 0.018
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 19/95 (20%)

Query: 59  YICNDCKQAQEGSSEELYCICRTPAVTSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDDE 118
           +IC  C+     S  E+   C  P+  SE            +   + +  LTP+ ++  E
Sbjct: 865 WICTFCRDL---SKPEVEYDCDAPSHNSE------------KKKTEGLVKLTPIDKRKCE 909

Query: 119 ELKR---AHKMARPFLEPVDPNDAPDYYGVIKEPV 150
            L      H+M+  F +PV P   PDYY +IK P+
Sbjct: 910 RLLLFLYCHEMSLAFQDPV-PLTVPDYYKIIKNPM 943


>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
           [Homo sapiens]
          Length = 1016

 Score = 35.8 bits (81), Expect = 0.018
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 19/95 (20%)

Query: 59  YICNDCKQAQEGSSEELYCICRTPAVTSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDDE 118
           +IC  C+     S  E+   C  P+  SE            +   + +  LTP+ ++  E
Sbjct: 831 WICTFCRDL---SKPEVEYDCDAPSHNSE------------KKKTEGLVKLTPIDKRKCE 875

Query: 119 ELKR---AHKMARPFLEPVDPNDAPDYYGVIKEPV 150
            L      H+M+  F +PV P   PDYY +IK P+
Sbjct: 876 RLLLFLYCHEMSLAFQDPV-PLTVPDYYKIIKNPM 909


>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
          Length = 832

 Score = 35.0 bits (79), Expect = 0.030
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 122 RAHKMARPFLEPVDPNDAPDYYGVIKEPV 150
           ++H+ A PF+EPV   +AP YY VI+ P+
Sbjct: 740 KSHQSAWPFMEPVKRTEAPGYYEVIRFPM 768


>gi|74027251 tripartite motif-containing 33 protein isoform beta [Homo
            sapiens]
          Length = 1110

 Score = 35.0 bits (79), Expect = 0.030
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 93   EYVCPQCQSTEDAMTV--LTPLTEKDDEELKR---AHKMARPFLEPVDPNDAPDYYGVIK 147
            EY C   Q ++   T   L+P+ ++  E L      H+++  F EPV P   P+YY +IK
Sbjct: 940  EYDCDNLQHSKKGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPV-PASIPNYYKIIK 998

Query: 148  EPVGTHELNLKFFQK 162
            +P+    +  K  +K
Sbjct: 999  KPMDLSTVKKKLQKK 1013


>gi|74027249 tripartite motif-containing 33 protein isoform alpha
            [Homo sapiens]
          Length = 1127

 Score = 35.0 bits (79), Expect = 0.030
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 93   EYVCPQCQSTEDAMTV--LTPLTEKDDEELKR---AHKMARPFLEPVDPNDAPDYYGVIK 147
            EY C   Q ++   T   L+P+ ++  E L      H+++  F EPV P   P+YY +IK
Sbjct: 940  EYDCDNLQHSKKGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPV-PASIPNYYKIIK 998

Query: 148  EPVGTHELNLKFFQK 162
            +P+    +  K  +K
Sbjct: 999  KPMDLSTVKKKLQKK 1013


>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
          Length = 1390

 Score = 34.7 bits (78), Expect = 0.040
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 125  KMARPFLEPVDPNDAPDYYGVIKEPV 150
            K  R F +PVDP++ PDY  VIK+P+
Sbjct: 1004 KRFRVFTKPVDPDEVPDYVTVIKQPM 1029


>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
           sapiens]
          Length = 929

 Score = 34.3 bits (77), Expect = 0.052
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 32  IGCDLCTNWYYGECVGIAEKEAKKMDVYICNDC 64
           IGCD C +WY+  CVGI     ++M  + C  C
Sbjct: 881 IGCDDCDDWYHWPCVGIMTAPPEEMQ-WFCPKC 912


>gi|18034775 PHD finger protein 20 [Homo sapiens]
          Length = 1012

 Score = 33.5 bits (75), Expect = 0.088
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 30  FYIGCDLCTNWYYGECVGIAEKEA-KKMDVYICND 63
           F I C+ C  W +G C+G+ E+   +K   Y+C D
Sbjct: 665 FMIQCEECQCWQHGVCMGLLEENVPEKYTCYVCQD 699


>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
            sapiens]
          Length = 3969

 Score = 32.7 bits (73), Expect = 0.15
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 34   CDLCTNWYYGECVG--IAEKEAKKMDVYICNDCKQAQEGSSEELYCICRTPAVTSEAELI 91
            C+ C N Y+ EC+G     K  KK  V+IC  C + +        C   TP    +A+  
Sbjct: 1498 CNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCVRCKS-------CGSTTPGKGWDAQWS 1550

Query: 92   DEY-VCPQC 99
             ++ +C  C
Sbjct: 1551 HDFSLCHDC 1559


>gi|166795250 kinesin family member 2C [Homo sapiens]
          Length = 725

 Score = 32.7 bits (73), Expect = 0.15
 Identities = 21/78 (26%), Positives = 34/78 (43%)

Query: 65  KQAQEGSSEELYCICRTPAVTSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDDEELKRAH 124
           +Q  +  +EE+        +       +E +  Q  S  +AMT +  L EK  EELK   
Sbjct: 597 EQLIQMETEEMEACSNGALIPGNLSKEEEELSSQMSSFNEAMTQIRELEEKAMEELKEII 656

Query: 125 KMARPFLEPVDPNDAPDY 142
           +    +LE  +  + PDY
Sbjct: 657 QQGPDWLELSEMTEQPDY 674


>gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]
          Length = 1544

 Score = 32.3 bits (72), Expect = 0.20
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 31   YIGCD-LCTNWYYGECVGIAEKEAKKMDVYICNDC 64
            ++ CD  C  W++  CVG++ + A+K D YIC  C
Sbjct: 1502 WVQCDGSCNQWFHQVCVGVSPEMAEKED-YICVRC 1535



 Score = 26.9 bits (58), Expect = 8.3
 Identities = 9/44 (20%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 32   IGCDLCTNWYYGECVGIAEKEAKKMDVYICNDCKQAQEGSSEEL 75
            I C+LC + ++  CV +    ++ + +++C  C+++++   E++
Sbjct: 1190 IQCELCRDAFHTSCVAV-PSISQGLRIWLCPHCRRSEKPPLEKI 1232


>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
            sapiens]
          Length = 1690

 Score = 32.0 bits (71), Expect = 0.26
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 31   YIGCDL-CTNWYYGECVGIAEKEAKKMDVYICNDCKQAQ 68
            ++ CD  C  W++  CVG++ + A+  D YIC +C + Q
Sbjct: 1625 WVQCDGGCDEWFHQVCVGVSPEMAENED-YICINCAKKQ 1662



 Score = 29.6 bits (65), Expect = 1.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 30   FYIGCDLCTNWYYGECVGIAEKEAKK 55
            F + C+LC +W++  CV + +  ++K
Sbjct: 1173 FMLQCELCKDWFHNSCVPLPKSSSQK 1198


>gi|7657218 bromodomain-containing protein 4 isoform short [Homo
           sapiens]
          Length = 722

 Score = 31.6 bits (70), Expect = 0.33
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 7/50 (14%)

Query: 124 HKMARPFLEPVDPN--DAPDYYGVIKEP--VGTHELNLK---FFQKSQCI 166
           H+ A PF +PVD    + PDYY +IK P  +GT +  L+   ++   +CI
Sbjct: 77  HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECI 126


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,861,866
Number of Sequences: 37866
Number of extensions: 313169
Number of successful extensions: 900
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 124
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.