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Search of human proteins with 169211258
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169211258 PREDICTED: similar to hCG2036610 [Homo sapiens]
(387 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169211258 PREDICTED: similar to hCG2036610 [Homo sapiens] 798 0.0
gi|169211651 PREDICTED: similar to protein phosphatase 1, regula... 797 0.0
gi|169210870 PREDICTED: similar to hCG2036610 [Homo sapiens] 797 0.0
gi|5453946 protein phosphatase 1, regulatory subunit 2 [Homo sap... 88 1e-17
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 43 4e-04
gi|150170699 kinesin family member 26A [Homo sapiens] 43 6e-04
gi|55956899 keratin 9 [Homo sapiens] 42 7e-04
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa... 41 0.002
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 39 0.006
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 39 0.008
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 39 0.008
gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens] 39 0.008
gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens] 39 0.008
gi|28559039 mediator complex subunit 1 [Homo sapiens] 39 0.010
gi|29826279 tubby isoform b [Homo sapiens] 38 0.014
gi|19923167 tubby isoform a [Homo sapiens] 38 0.014
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 38 0.014
gi|48762934 alpha 2 type I collagen [Homo sapiens] 38 0.014
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 38 0.014
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 38 0.014
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 38 0.014
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 37 0.039
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 37 0.039
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.039
gi|15812180 butyrate response factor 1 [Homo sapiens] 37 0.039
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 37 0.039
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 37 0.039
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 36 0.051
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 36 0.067
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 36 0.067
>gi|169211258 PREDICTED: similar to hCG2036610 [Homo sapiens]
Length = 387
Score = 798 bits (2062), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH
Sbjct: 1 MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA
Sbjct: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
Query: 121 GQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQHWDEMN 180
GQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQHWDEMN
Sbjct: 121 GQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQHWDEMN 180
Query: 181 ILATYRPADKDYAFMMVDEPNTPYHRLQDSFEDLSAGSSCSVNPGVLAERGRWSEPLARV 240
ILATYRPADKDYAFMMVDEPNTPYHRLQDSFEDLSAGSSCSVNPGVLAERGRWSEPLARV
Sbjct: 181 ILATYRPADKDYAFMMVDEPNTPYHRLQDSFEDLSAGSSCSVNPGVLAERGRWSEPLARV 240
Query: 241 RWESQALTMVTDSTDFDKRRKAHYDKGKFLKAQKNQPLENEEDEDDNGGIISISGGSQGV 300
RWESQALTMVTDSTDFDKRRKAHYDKGKFLKAQKNQPLENEEDEDDNGGIISISGGSQGV
Sbjct: 241 RWESQALTMVTDSTDFDKRRKAHYDKGKFLKAQKNQPLENEEDEDDNGGIISISGGSQGV 300
Query: 301 MLDPEPRPVQRGLAGELARGAKDEPGLKSVPPAVATIILGQEIALQHKEYDGKGLYLRSC 360
MLDPEPRPVQRGLAGELARGAKDEPGLKSVPPAVATIILGQEIALQHKEYDGKGLYLRSC
Sbjct: 301 MLDPEPRPVQRGLAGELARGAKDEPGLKSVPPAVATIILGQEIALQHKEYDGKGLYLRSC 360
Query: 361 SHPELVEDVEDEHQDGQYISNRWKERP 387
SHPELVEDVEDEHQDGQYISNRWKERP
Sbjct: 361 SHPELVEDVEDEHQDGQYISNRWKERP 387
>gi|169211651 PREDICTED: similar to protein phosphatase 1,
regulatory (inhibitor) subunit 2 [Homo sapiens]
Length = 387
Score = 797 bits (2058), Expect = 0.0
Identities = 386/387 (99%), Positives = 386/387 (99%)
Query: 1 MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH
Sbjct: 1 MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA
Sbjct: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
Query: 121 GQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQHWDEMN 180
GQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQHWDEMN
Sbjct: 121 GQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQHWDEMN 180
Query: 181 ILATYRPADKDYAFMMVDEPNTPYHRLQDSFEDLSAGSSCSVNPGVLAERGRWSEPLARV 240
ILATYRPADKDY FMMVDEPNTPYHRLQDSFEDLSAGSSCSVNPGVLAERGRWSEPLARV
Sbjct: 181 ILATYRPADKDYGFMMVDEPNTPYHRLQDSFEDLSAGSSCSVNPGVLAERGRWSEPLARV 240
Query: 241 RWESQALTMVTDSTDFDKRRKAHYDKGKFLKAQKNQPLENEEDEDDNGGIISISGGSQGV 300
RWESQALTMVTDSTDFDKRRKAHYDKGKFLKAQKNQPLENEEDEDDNGGIISISGGSQGV
Sbjct: 241 RWESQALTMVTDSTDFDKRRKAHYDKGKFLKAQKNQPLENEEDEDDNGGIISISGGSQGV 300
Query: 301 MLDPEPRPVQRGLAGELARGAKDEPGLKSVPPAVATIILGQEIALQHKEYDGKGLYLRSC 360
MLDPEPRPVQRGLAGELARGAKDEPGLKSVPPAVATIILGQEIALQHKEYDGKGLYLRSC
Sbjct: 301 MLDPEPRPVQRGLAGELARGAKDEPGLKSVPPAVATIILGQEIALQHKEYDGKGLYLRSC 360
Query: 361 SHPELVEDVEDEHQDGQYISNRWKERP 387
SHPELVEDVEDEHQDGQYISNRWKERP
Sbjct: 361 SHPELVEDVEDEHQDGQYISNRWKERP 387
>gi|169210870 PREDICTED: similar to hCG2036610 [Homo sapiens]
Length = 387
Score = 797 bits (2058), Expect = 0.0
Identities = 386/387 (99%), Positives = 386/387 (99%)
Query: 1 MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH
Sbjct: 1 MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA
Sbjct: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
Query: 121 GQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQHWDEMN 180
GQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQHWDEMN
Sbjct: 121 GQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQHWDEMN 180
Query: 181 ILATYRPADKDYAFMMVDEPNTPYHRLQDSFEDLSAGSSCSVNPGVLAERGRWSEPLARV 240
ILATYRPADKDY FMMVDEPNTPYHRLQDSFEDLSAGSSCSVNPGVLAERGRWSEPLARV
Sbjct: 181 ILATYRPADKDYGFMMVDEPNTPYHRLQDSFEDLSAGSSCSVNPGVLAERGRWSEPLARV 240
Query: 241 RWESQALTMVTDSTDFDKRRKAHYDKGKFLKAQKNQPLENEEDEDDNGGIISISGGSQGV 300
RWESQALTMVTDSTDFDKRRKAHYDKGKFLKAQKNQPLENEEDEDDNGGIISISGGSQGV
Sbjct: 241 RWESQALTMVTDSTDFDKRRKAHYDKGKFLKAQKNQPLENEEDEDDNGGIISISGGSQGV 300
Query: 301 MLDPEPRPVQRGLAGELARGAKDEPGLKSVPPAVATIILGQEIALQHKEYDGKGLYLRSC 360
MLDPEPRPVQRGLAGELARGAKDEPGLKSVPPAVATIILGQEIALQHKEYDGKGLYLRSC
Sbjct: 301 MLDPEPRPVQRGLAGELARGAKDEPGLKSVPPAVATIILGQEIALQHKEYDGKGLYLRSC 360
Query: 361 SHPELVEDVEDEHQDGQYISNRWKERP 387
SHPELVEDVEDEHQDGQYISNRWKERP
Sbjct: 361 SHPELVEDVEDEHQDGQYISNRWKERP 387
>gi|5453946 protein phosphatase 1, regulatory subunit 2 [Homo
sapiens]
Length = 205
Score = 87.8 bits (216), Expect = 1e-17
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 21/169 (12%)
Query: 149 RSILRKNSSNLMQKSPNVENPR--------RKSQHWDEMNILATYRPADKDYAFMMVDEP 200
+ IL+ +S + E PR +KSQ WDEMNILATY PADKDY M +DEP
Sbjct: 12 KGILKNKTSTTSSMVASAEQPRGNVDEELSKKSQKWDEMNILATYHPADKDYGLMKIDEP 71
Query: 201 NTPYHRLQDSFEDLSAGSSC--SVNPGVLAERGRWSEPL-ARVRWESQALTMVTDS---- 253
+TPYH + ED + + ++ P +LA + +E L + R + Q + DS
Sbjct: 72 STPYHSMMGDDEDACSDTEATEAMAPDILARKLAAAEGLEPKYRIQEQESSGEEDSDLSP 131
Query: 254 ------TDFDKRRKAHYDKGKFLKAQKNQPLENEEDEDDNGGIISISGG 296
F+ +RK HY++G +K + ++ D+D++ ++ + G
Sbjct: 132 EEREKKRQFEMKRKLHYNEGLNIKLARQLISKDLHDDDEDEEMLETADG 180
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 43.1 bits (100), Expect = 4e-04
Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 11/133 (8%)
Query: 8 GAAGGLNRDSPGGAA--RGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSS 65
G G P GA RG P +G + G P R P + +T + G
Sbjct: 528 GFPGSDGLPGPKGAQGERG-PVGSSGPKGSQGDPGRP-----GEPGLPGARGLTGNPGVQ 581
Query: 66 CPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAG--QE 123
P G + LG+ P + R S+G PG +PGP+ S PG G AG +
Sbjct: 582 GPEGKLGPLGA-PGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQ 640
Query: 124 VNSPGCSPHSGPT 136
+PG GP+
Sbjct: 641 RGAPGKDGEVGPS 653
Score = 32.3 bits (72), Expect = 0.74
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 17/143 (11%)
Query: 8 GAAGGLNRDSPGGAA--RGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGG----SVTHS 61
G AGG D P G+ G P TG G P + GP GG +
Sbjct: 732 GMAGGHGPDGPKGSPGPSGTPGD-TGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGT 790
Query: 62 TGSSCPSGGIVVLG----SGPSQHPREAANHSL----GSGRNPGGFNIPGPRTSVSRASS 113
G+ G LG +GP+ E L GS NPG GP +V A
Sbjct: 791 AGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGP 850
Query: 114 PGPGGPAG--QEVNSPGCSPHSG 134
GP G G E PG +G
Sbjct: 851 QGPDGQPGVKGEPGEPGQKGDAG 873
Score = 32.0 bits (71), Expect = 0.97
Identities = 36/119 (30%), Positives = 43/119 (36%), Gaps = 18/119 (15%)
Query: 8 GAAGGLNRDS----PGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTG 63
GA G D PG PA TG + G+P L G + G S G
Sbjct: 786 GAEGTAGNDGARGLPGPLGPPGPAGPTGEK---GEPGPRGLVGPPGSRGNPG-----SRG 837
Query: 64 SSCPSGGIVVLG-SGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAG 121
+ P+G + G GP P G G PGP+ A SPGP GP G
Sbjct: 838 ENGPTGAVGFAGPQGPDGQP--GVKGEPGEPGQKGDAGSPGPQ---GLAGSPGPHGPNG 891
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/134 (28%), Positives = 42/134 (31%), Gaps = 14/134 (10%)
Query: 8 GAAGGLNRDSPGGAARGV----PAAVTGVEAGAGQ--PSRVVLFHGSGPHVHSGGSVTHS 61
G G P G A P V G++ G G P F GS V G +
Sbjct: 867 GQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAG-A 925
Query: 62 TGSSCPSG-----GIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGP 116
G + P G G L P H R G PG PG PGP
Sbjct: 926 PGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGP 985
Query: 117 GGPAGQE--VNSPG 128
G GQ V PG
Sbjct: 986 AGTTGQRGIVGMPG 999
Score = 30.8 bits (68), Expect = 2.2
Identities = 41/149 (27%), Positives = 53/149 (35%), Gaps = 33/149 (22%)
Query: 1 MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
+++ LG+ GL S G P + G + GAG +GP
Sbjct: 198 LDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGP---------TGP--------PG 240
Query: 61 STGSSCPSGGIVVLG-SGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPG-PG- 117
G P G I G GP P E + G NPG G + +PG PG
Sbjct: 241 EPGDPGPMGPIGSRGPEGPPGKPGE--DGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGL 298
Query: 118 ----------GPAGQEVNSPGCSPHSGPT 136
GP G EV +PG +GPT
Sbjct: 299 KGHRGHKGLEGPKG-EVGAPGSKGEAGPT 326
Score = 30.4 bits (67), Expect = 2.8
Identities = 41/149 (27%), Positives = 53/149 (35%), Gaps = 20/149 (13%)
Query: 3 KVESLGAAGGLNRDSPGGAA--RGVPAAV--TGVEAGAGQPSRVVLFHGSG-PHVHSGGS 57
K+ LGA G R P G+ RG P ++ G + +G P + +G P
Sbjct: 586 KLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPG 645
Query: 58 VTHSTGSSCPSGGIVVLGSGPSQHPREAANHS--------LGSGRNPGGFNIPGPRTSVS 109
G S P G + G Q P G G PG +PG +V
Sbjct: 646 KDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAV- 704
Query: 110 RASSPGPGGPAGQEVNSPGCSPHSGPTCL 138
GP GP G+ N PG G T L
Sbjct: 705 -----GPLGPRGERGN-PGERGEPGITGL 727
Score = 30.0 bits (66), Expect = 3.7
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 24/127 (18%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCP 67
G G + P G +R A + G++ +G S+V L GS V G G
Sbjct: 174 GPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGP----QGLQGQ 229
Query: 68 SGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSP 127
GG +GP+ P E PG PGP + GP G G++ P
Sbjct: 230 QGG-----AGPTGPPGE-----------PGD---PGPMGPIGSRGPEGPPGKPGED-GEP 269
Query: 128 GCSPHSG 134
G + + G
Sbjct: 270 GRNGNPG 276
Score = 30.0 bits (66), Expect = 3.7
Identities = 36/127 (28%), Positives = 46/127 (36%), Gaps = 33/127 (25%)
Query: 23 RGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLGS-GPSQH 81
RG+P G+ AG P +V GP T +TG P G + GS GP
Sbjct: 1004 RGMP----GLPGPAGTPGKV------GP--------TGATGDKGPPGPVGPPGSNGPVGE 1045
Query: 82 P-------------REAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPG 128
P R+ A G +PG +PG + + G G AGQ PG
Sbjct: 1046 PGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQR-GDPG 1104
Query: 129 CSPHSGP 135
GP
Sbjct: 1105 SRGPIGP 1111
Score = 29.3 bits (64), Expect = 6.3
Identities = 40/142 (28%), Positives = 49/142 (34%), Gaps = 18/142 (12%)
Query: 7 LGAAGGLN-RDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSS 65
+GA G L R PG R P G G P + GP G + S+G
Sbjct: 329 MGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGK------PGPMGPLG--IPGSSGFP 380
Query: 66 CPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVN 125
G G ++ P E G PG PG ++ +PG GP G
Sbjct: 381 GNPGMKGEAGPTGARGP-EGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTG---- 435
Query: 126 SPGCSPHSG----PTCLNPQNS 143
SPG S G P PQ S
Sbjct: 436 SPGTSGPPGSAGPPGSPGPQGS 457
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 42.7 bits (99), Expect = 6e-04
Identities = 38/138 (27%), Positives = 51/138 (36%), Gaps = 34/138 (24%)
Query: 1 MEKVESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
+E+ E L + R++PG R VP G P S TH
Sbjct: 1438 LERYEGLAHSSSKGREAPGRPPRAVPK--------LGVPP---------------SSPTH 1474
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPG--PGG 118
+C SG +G+ P+ G G GG GP +S AS G PGG
Sbjct: 1475 GPAPACRSGAAKAVGA-----PKPPVGGGKGRGLVAGGSRALGPSVKLSTASVTGRSPGG 1529
Query: 119 PAGQEVNSPGCSPHSGPT 136
P V P +P +GP+
Sbjct: 1530 P----VAGPRAAPRAGPS 1543
Score = 32.0 bits (71), Expect = 0.97
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 97 GGFNIPGPRTSVSRASSPGPGGPAGQEVNSPG 128
GG ++ P T+ S +PGP GPAG++ G
Sbjct: 157 GGPSLAPPSTTTSSRDTPGPAGPAGRQPGRAG 188
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 42.4 bits (98), Expect = 7e-04
Identities = 40/129 (31%), Positives = 46/129 (35%), Gaps = 7/129 (5%)
Query: 7 LGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSC 66
LG GG G+ G + G +G G GSG SGGS +GS
Sbjct: 475 LGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGG------GSGSRGGSGGSYGGGSGSGG 528
Query: 67 PSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGP-GGPAGQEVN 125
SGG GSG HS GSG N GG + G + G GG G
Sbjct: 529 GSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGG 588
Query: 126 SPGCSPHSG 134
G SG
Sbjct: 589 GSGFGGESG 597
Score = 32.0 bits (71), Expect = 0.97
Identities = 39/129 (30%), Positives = 46/129 (35%), Gaps = 2/129 (1%)
Query: 6 SLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVT-HSTGS 64
S G G G +RG G +G+G S GSG HSGGS HS GS
Sbjct: 496 SYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGG-HSGGSGGGHSGGS 554
Query: 65 SCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEV 124
GG G G + GSG + GG + G + S G G
Sbjct: 555 GGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYG 614
Query: 125 NSPGCSPHS 133
G S HS
Sbjct: 615 GGSGKSSHS 623
>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
sapiens]
Length = 685
Score = 41.2 bits (95), Expect = 0.002
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 32 VEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLGSGPSQHPREAANHSLG 91
++AG+G S+ L G V +G HS+ SS PS V + S+ + A H
Sbjct: 288 IKAGSGNSSQPSLREGHDKPVFNGAGKPHSSTSS-PS----VPKTSASRTQKSAVEHKAK 342
Query: 92 SGRNPGGFNIPGPR-TSVSRASSPGPGGPAGQEVNSPGCSPHSG---PTCLN-PQNSQQD 146
+ + PGP T ++A SPG P ++PG P +G PT + P +Q+
Sbjct: 343 KSLSHPSHSRPGPMVTPHNKAKSPGVRQPGSSSSSAPG-QPSTGVARPTVSSGPVPRRQN 401
Query: 147 RPRSILRKNSSNLMQKSPNVENPRRKS 173
S + S + +K N NP R++
Sbjct: 402 GSSSSGPERSISGSKKPTNDSNPSRRT 428
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 39.3 bits (90), Expect = 0.006
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 78 PSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPG---PGGPAGQ-----EVNSPGC 129
P+ P + HSLG N G PR +S S+PG PG PAG ++SPG
Sbjct: 460 PAGSPARSPAHSLGL--NFGDAARQTPRHGLSALSAPGLPGPGQPAGPGAWAPPLDSPGT 517
Query: 130 SPHSGPTCLNPQNSQ 144
GP C +P+ +Q
Sbjct: 518 PSPDGPWCFSPEGAQ 532
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 38.9 bits (89), Expect = 0.008
Identities = 39/139 (28%), Positives = 51/139 (36%), Gaps = 11/139 (7%)
Query: 11 GGLNRDSPGGAARGVP--AAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPS 68
GG +S GG + P A G A +P + GG G++ P
Sbjct: 6 GGGEAESGGGGSGSAPVTAGAAGPAAQEAEPPLTAVLVEE--EEEEGGRAGAEGGAAGPD 63
Query: 69 GGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPG 128
G V S S + S+G+G G + P P + AS+P PG AG PG
Sbjct: 64 DGGVAAASSGSAQAASSPAASVGTGVAGGAVSTPAP----APASAPAPGPSAGP---PPG 116
Query: 129 CSPHSGPTCLNPQNSQQDR 147
TC Q S Q R
Sbjct: 117 PPASLLDTCAVCQQSLQSR 135
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 38.9 bits (89), Expect = 0.008
Identities = 39/139 (28%), Positives = 51/139 (36%), Gaps = 11/139 (7%)
Query: 11 GGLNRDSPGGAARGVP--AAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPS 68
GG +S GG + P A G A +P + GG G++ P
Sbjct: 6 GGGEAESGGGGSGSAPVTAGAAGPAAQEAEPPLTAVLVEE--EEEEGGRAGAEGGAAGPD 63
Query: 69 GGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPG 128
G V S S + S+G+G G + P P + AS+P PG AG PG
Sbjct: 64 DGGVAAASSGSAQAASSPAASVGTGVAGGAVSTPAP----APASAPAPGPSAGP---PPG 116
Query: 129 CSPHSGPTCLNPQNSQQDR 147
TC Q S Q R
Sbjct: 117 PPASLLDTCAVCQQSLQSR 135
>gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]
Length = 485
Score = 38.9 bits (89), Expect = 0.008
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
+T S G + SGP A H GSG PG ++PG + S PG GP
Sbjct: 128 TTDHSSNPGPVPGSSSGPVLGSSSGAGHGSGSGSGPGCGSVPGSGSGPGPGSGPG-SGPG 186
Query: 121 GQEVNSPGCSPHSGP 135
+ PG P SGP
Sbjct: 187 HGSGSHPG--PASGP 199
Score = 36.6 bits (83), Expect = 0.039
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 48 SGPHVHSGGSVTHSTGSSCPSGGIVVLGS----GPSQHPREAANHSLGSGRNPGGFNIPG 103
SGP + S H +GS G V GS GP P H GSG +PG + PG
Sbjct: 143 SGPVLGSSSGAGHGSGSGSGPGCGSVPGSGSGPGPGSGPGSGPGH--GSGSHPGPASGPG 200
Query: 104 PRTSVSRASSP 114
P T SP
Sbjct: 201 PDTGPDSELSP 211
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 46 HGSGPHVHSGGSVTHSTGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPR 105
H S P G S GSS +G GSGP GSG PG + PG
Sbjct: 131 HSSNPGPVPGSSSGPVLGSSSGAGHGSGSGSGPG------CGSVPGSGSGPGPGSGPGSG 184
Query: 106 TSVSRASSPGPGGPAGQE 123
S PGP G +
Sbjct: 185 PGHGSGSHPGPASGPGPD 202
>gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]
Length = 501
Score = 38.9 bits (89), Expect = 0.008
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
+T S G + SGP A H GSG PG ++PG + S PG GP
Sbjct: 128 TTDHSSNPGPVPGSSSGPVLGSSSGAGHGSGSGSGPGCGSVPGSGSGPGPGSGPG-SGPG 186
Query: 121 GQEVNSPGCSPHSGP 135
+ PG P SGP
Sbjct: 187 HGSGSHPG--PASGP 199
Score = 36.6 bits (83), Expect = 0.039
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 48 SGPHVHSGGSVTHSTGSSCPSGGIVVLGS----GPSQHPREAANHSLGSGRNPGGFNIPG 103
SGP + S H +GS G V GS GP P H GSG +PG + PG
Sbjct: 143 SGPVLGSSSGAGHGSGSGSGPGCGSVPGSGSGPGPGSGPGSGPGH--GSGSHPGPASGPG 200
Query: 104 PRTSVSRASSP 114
P T SP
Sbjct: 201 PDTGPDSELSP 211
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 46 HGSGPHVHSGGSVTHSTGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPR 105
H S P G S GSS +G GSGP GSG PG + PG
Sbjct: 131 HSSNPGPVPGSSSGPVLGSSSGAGHGSGSGSGPG------CGSVPGSGSGPGPGSGPGSG 184
Query: 106 TSVSRASSPGPGGPAGQE 123
S PGP G +
Sbjct: 185 PGHGSGSHPGPASGPGPD 202
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 38.5 bits (88), Expect = 0.010
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 13/152 (8%)
Query: 10 AGGLNRDSPGGAARGVPAAVTGVEAGA---GQPSRVVLFHGSGPHVHSGGSVTHSTGSSC 66
+ G ++ PG A +P + G G+PS + SG V S GS +H + SS
Sbjct: 1045 SAGRSQTPPGVATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGS-VSSSGSKSHHSHSSS 1103
Query: 67 PSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPR-TSVSRASSPGPGGPAGQEVN 125
S G S +++ L S ++ G +S S+ SS G P +
Sbjct: 1104 SSSSASTSGKMKSSKSEGSSSSKLSSSM----YSSQGSSGSSQSKNSSQSGGKPGSSPIT 1159
Query: 126 SPGCSPHSGPTCLNPQNSQQDRPRSILRKNSS 157
G S S T + PQ +P S++ + S
Sbjct: 1160 KHGLSSGSSSTKMKPQG----KPSSLMNPSLS 1187
Score = 30.8 bits (68), Expect = 2.2
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Query: 47 GSGPHVHSGGSVTHSTGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRT 106
GS P G S S+ P G L + P + +HS R PGG +
Sbjct: 1154 GSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPNISPSHS----RPPGGSD------ 1203
Query: 107 SVSRASSPGPGGPAGQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNV 166
++ P PG P + SP S SG + ++ +S S +S +L QK+P
Sbjct: 1204 KLASPMKPVPGTPPSSKAKSP-ISSGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPPS 1262
Query: 167 EN 168
N
Sbjct: 1263 SN 1264
>gi|29826279 tubby isoform b [Homo sapiens]
Length = 506
Score = 38.1 bits (87), Expect = 0.014
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 1 MEKVESLGAA--GGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSV 58
+++ +SL + G +P A R AA G + GA + + G H + G
Sbjct: 85 VQEADSLASVQLGATRPTAPASAKRTKAAATAGGQGGAARKEK------KGKHKGTSGPA 138
Query: 59 THSTGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGG 98
+ S G + +L G S H ++A + G G P G
Sbjct: 139 ALAEDKSEAQGPVQILTVGQSDHAQDAGETAAGGGERPSG 178
>gi|19923167 tubby isoform a [Homo sapiens]
Length = 561
Score = 38.1 bits (87), Expect = 0.014
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 1 MEKVESLGAA--GGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSV 58
+++ +SL + G +P A R AA G + GA + + G H + G
Sbjct: 140 VQEADSLASVQLGATRPTAPASAKRTKAAATAGGQGGAARKEK------KGKHKGTSGPA 193
Query: 59 THSTGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGG 98
+ S G + +L G S H ++A + G G P G
Sbjct: 194 ALAEDKSEAQGPVQILTVGQSDHAQDAGETAAGGGERPSG 233
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.1 bits (87), Expect = 0.014
Identities = 40/136 (29%), Positives = 51/136 (37%), Gaps = 14/136 (10%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGS----VTHSTG 63
G AG D GAA P TG G P V +GP G V G
Sbjct: 317 GPAGARGNDGATGAAG--PPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG 374
Query: 64 SSCPSGGIVVLGSGPSQHP-REAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQ 122
P+G +GP+ +P + + G+ PG PG + + GPGGP G
Sbjct: 375 PPGPAGA-----AGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP 429
Query: 123 EVNS--PGCSPHSGPT 136
+ NS PG G T
Sbjct: 430 KGNSGEPGAPGSKGDT 445
Score = 36.6 bits (83), Expect = 0.039
Identities = 42/136 (30%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSG-GSVTHSTGSSC 66
GA G P G A G P + V A + +R +GP +G G
Sbjct: 833 GAKGDAGPPGPAGPA-GPPGPIGNVGAPGAKGAR----GSAGPPGATGFPGAAGRVGPPG 887
Query: 67 PSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNS 126
PSG +GP P A G+ P G GP PGP GPAG E S
Sbjct: 888 PSGN-----AGPPGPPGPAGKEG---GKGPRGET--GPAGRPGEVGPPGPPGPAG-EKGS 936
Query: 127 PGC-SPHSGPTCLNPQ 141
PG P P PQ
Sbjct: 937 PGADGPAGAPGTPGPQ 952
Score = 35.4 bits (80), Expect = 0.088
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
Query: 18 PGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLGSG 77
PG A P G G+P +GP G + P G I +G+
Sbjct: 808 PGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP--------PGPAGPAGPPGPIGNVGAP 859
Query: 78 PSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPHSGP 135
++ R +A +G PG GP A PGP GPAG+E G +GP
Sbjct: 860 GAKGARGSAGPPGATGF-PGAAGRVGPPGPSGNAGPPGPPGPAGKE-GGKGPRGETGP 915
Score = 33.9 bits (76), Expect = 0.26
Identities = 42/144 (29%), Positives = 51/144 (35%), Gaps = 22/144 (15%)
Query: 6 SLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSS 65
S G AG + SPG A R A + G + G P +GP +G G
Sbjct: 513 SPGPAGP--KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQD--GRPGPP 568
Query: 66 CPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASS---------PGP 116
P G G P+ AA G G +PGP +V A PGP
Sbjct: 569 GPPGARGQAGVMGFPGPKGAA----GEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGP 624
Query: 117 GGPAGQE-----VNSPGCSPHSGP 135
GPAG+ SPG GP
Sbjct: 625 AGPAGERGEQGPAGSPGFQGLPGP 648
Score = 33.9 bits (76), Expect = 0.26
Identities = 35/123 (28%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 18 PGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSG-GSVTHSTGSSCPSGGIVVLGS 76
PG A R P +G G P G GP +G G P G GS
Sbjct: 877 PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGS 936
Query: 77 ----GPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPH 132
GP+ P + R G +PG R PGP G G++ S G S
Sbjct: 937 PGADGPAGAPGTPGPQGIAGQR--GVVGLPGQRGERGFPGLPGPSGEPGKQGPS-GASGE 993
Query: 133 SGP 135
GP
Sbjct: 994 RGP 996
Score = 32.3 bits (72), Expect = 0.74
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 30/130 (23%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH----STG 63
G G + P G PA G G+P L GP GG + + G
Sbjct: 449 GEPGPVGVQGPPG-----PAGEEGKRGARGEPGPTGL---PGPPGERGGPGSRGFPGADG 500
Query: 64 SSCPSGGIVVLGS----GPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPG-- 117
+ P G GS GP P EA PG +PG + SPGP
Sbjct: 501 VAGPKGPAGERGSPGPAGPKGSPGEAGR--------PGEAGLPGAKGLTGSPGSPGPDGK 552
Query: 118 ----GPAGQE 123
GPAGQ+
Sbjct: 553 TGPPGPAGQD 562
Score = 32.3 bits (72), Expect = 0.74
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 91 GSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQ--EVNSPG 128
GS PG + GP+ SPGP GP G E PG
Sbjct: 491 GSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 530
Score = 31.6 bits (70), Expect = 1.3
Identities = 39/129 (30%), Positives = 45/129 (34%), Gaps = 23/129 (17%)
Query: 8 GAAGGLNRDSPGGAA--------RGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVT 59
G AG + P GAA RGVP G AG+ GP +G
Sbjct: 575 GQAGVMGFPGPKGAAGEPGKAGERGVPGP-PGAVGPAGKDGEAGAQGPPGPAGPAG---- 629
Query: 60 HSTGSSCPSGGIVVLG-SGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSP---- 114
G P+G G GP+ P EA G PG PGP + P
Sbjct: 630 -ERGEQGPAGSPGFQGLPGPAGPPGEAGKP--GEQGVPGDLGAPGPSGARGERGFPGERG 686
Query: 115 --GPGGPAG 121
GP GPAG
Sbjct: 687 VQGPPGPAG 695
Score = 31.2 bits (69), Expect = 1.7
Identities = 38/123 (30%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAG----QPSRVVLFHGSGPHVHSGGSVTHSTG 63
G AG P GA RG PA G G Q R + H + S G
Sbjct: 1070 GPAGPAGPVGPVGA-RG-PAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPG 1127
Query: 64 SSCPSGGIVVLGSGPSQHPREAANHSLGSGRN-----PGGFNIPGPRTSVSRASSPGPGG 118
PSG SGP+ PR + G++ PG PGPR A GP G
Sbjct: 1128 EQGPSGA-----SGPAG-PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPG 1181
Query: 119 PAG 121
P G
Sbjct: 1182 PPG 1184
Score = 30.8 bits (68), Expect = 2.2
Identities = 34/133 (25%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 18 PGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLGSG 77
PG A PA G + G P + + G S P G G
Sbjct: 376 PGPAGAAGPAGNPGADGQPGAKGA-----NGAPGIAGAPGFPGARGPSGPQGP----GGP 426
Query: 78 PSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPHSGPTC 137
P + GS + G PGP GP GPAG+E G GPT
Sbjct: 427 PGPKGNSGEPGAPGSKGDTGAKGEPGP------VGVQGPPGPAGEE-GKRGARGEPGPTG 479
Query: 138 LNPQNSQQDRPRS 150
L ++ P S
Sbjct: 480 LPGPPGERGGPGS 492
Score = 30.8 bits (68), Expect = 2.2
Identities = 44/146 (30%), Positives = 50/146 (34%), Gaps = 34/146 (23%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCP 67
G AG R SPG PA G AG+P L G +T S GS P
Sbjct: 506 GPAG--ERGSPG------PAGPKGSPGEAGRPGEAGLPGAKG--------LTGSPGSPGP 549
Query: 68 SGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQ----- 122
G +GP P A G PG PG R PGP G AG+
Sbjct: 550 DGK-----TGP---PGPA-----GQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAG 596
Query: 123 EVNSPGCSPHSGPTCLNPQNSQQDRP 148
E PG GP + + Q P
Sbjct: 597 ERGVPGPPGAVGPAGKDGEAGAQGPP 622
Score = 30.0 bits (66), Expect = 3.7
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 8 GAAGGLNRDSPGG--AARGVPAAV--TGVEAGAGQPSRVVLFHGSGPHVHSG-GSVTHST 62
G AG R P G ARG + G + AG+P + GP G
Sbjct: 557 GPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEA 616
Query: 63 GSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQ 122
G+ P G +GP+ E G +PG +PGP A PG G G
Sbjct: 617 GAQGPPGP-----AGPAGERGEQ-----GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPG- 665
Query: 123 EVNSPGCSPHSG 134
++ +PG S G
Sbjct: 666 DLGAPGPSGARG 677
Score = 29.6 bits (65), Expect = 4.8
Identities = 35/137 (25%), Positives = 46/137 (33%), Gaps = 19/137 (13%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSG--------GSVT 59
GA+G + P G P G + AG+P R GP G G
Sbjct: 212 GASGPMGPRGPPG-----PPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKG 266
Query: 60 HSTGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGP 119
H S +GP P + P G +PG R R +PGP G
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG--LPGER---GRPGAPGPAGA 321
Query: 120 AGQEVNSPGCSPHSGPT 136
G + + G + GPT
Sbjct: 322 RGND-GATGAAGPPGPT 337
Score = 29.3 bits (64), Expect = 6.3
Identities = 35/131 (26%), Positives = 43/131 (32%), Gaps = 20/131 (15%)
Query: 18 PGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLGSG 77
P G+ TGVE G +GP G + G P G G
Sbjct: 96 PDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDG--IPGQPGLPGPPGP-----PG 148
Query: 78 PSQHPREAANHS--LGSG---RNPGGFNIPGPRTSVSRASSPGPGGPAGQ--------EV 124
P P N + L G ++ GG ++PGP PGP G G E
Sbjct: 149 PPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEP 208
Query: 125 NSPGCSPHSGP 135
PG S GP
Sbjct: 209 GEPGASGPMGP 219
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 38.1 bits (87), Expect = 0.014
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 90 LGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQ--EVNSPGCSPHSGP 135
+GS PG PGP+ + + GP GPAG EV PG S GP
Sbjct: 249 IGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGP 296
Score = 36.2 bits (82), Expect = 0.051
Identities = 42/129 (32%), Positives = 48/129 (37%), Gaps = 22/129 (17%)
Query: 8 GAAGGLN----RDSPGGAARGVPAAVTGVEA---GAGQPSRVVLFHGSGPHVHSGGSVTH 60
GAAG R SPG PA G AGQP GP +G V
Sbjct: 697 GAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENG--VVG 754
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPG------PRTSVSRASSP 114
TG +G +GP+ P A S G G PG PG P + P
Sbjct: 755 PTGPVGAAGP-----AGPNGPPGPAG--SRGDGGPPGMTGFPGAAGRTGPPGPSGISGPP 807
Query: 115 GPGGPAGQE 123
GP GPAG+E
Sbjct: 808 GPPGPAGKE 816
Score = 33.5 bits (75), Expect = 0.33
Identities = 39/133 (29%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCP 67
G +G P G+ RG P+ G + G+P V +GP SG + G++
Sbjct: 595 GESGAAGPTGPIGS-RG-PSGPPGPDGNKGEPGVVGAVGTAGPSGPSG--LPGERGAAGI 650
Query: 68 SGGIVVLGS----GPSQHP-REAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQ 122
GG G G +P R+ A + G+ PG G R A GP GP G
Sbjct: 651 PGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRG- 709
Query: 123 EVNSPGCSPHSGP 135
SPG GP
Sbjct: 710 ---SPGERGEVGP 719
Score = 33.1 bits (74), Expect = 0.44
Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 7 LGAAGGLNRDSPGGAAR----GVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHST 62
+GAAG + P G A G P +TG AG+ +GP SG ++
Sbjct: 759 VGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGR---------TGPPGPSG--ISGPP 807
Query: 63 GSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQ 122
G P+G + G Q P +G+ PG GP A PG GP G
Sbjct: 808 GPPGPAGKEGLRGPRGDQGP-VGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGL 866
Query: 123 EVNSPG 128
+ +PG
Sbjct: 867 -LGAPG 871
Score = 32.7 bits (73), Expect = 0.57
Identities = 39/131 (29%), Positives = 43/131 (32%), Gaps = 8/131 (6%)
Query: 7 LGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSC 66
+G AG R PG P TG G L G G + + G
Sbjct: 480 IGPAGA--RGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNN--GAQGPPG 535
Query: 67 PSGGIVVLGSGPSQHPREAANHSLGSGRNPGG-FNIPGPRTSVSRASSPGPGGPAGQEVN 125
P G V G G P L P G PG R PGP GP G E
Sbjct: 536 PQG--VQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRG-ERG 592
Query: 126 SPGCSPHSGPT 136
PG S +GPT
Sbjct: 593 PPGESGAAGPT 603
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 91 GSGRNPGGFNIPGPRTSVSRASSPGP---GGPAGQEVNSPGCSPHSGP 135
G G PG + GPR A +PGP GPAG+ PG +GP
Sbjct: 85 GVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGE----PGEPGQTGP 128
Score = 31.2 bits (69), Expect = 1.7
Identities = 35/123 (28%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
Query: 8 GAAGGLNRDSPGG-----AARGVPAAV--TGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
G AG + P G ARG P AV GV G+ R GP G H
Sbjct: 886 GVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDG-QPGH 944
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
P G I +G+ + P + +G G GP V A + GP GP+
Sbjct: 945 KGERGYP-GNIGPVGAAGAPGP----HGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPS 999
Query: 121 GQE 123
G +
Sbjct: 1000 GPQ 1002
Score = 30.4 bits (67), Expect = 2.8
Identities = 48/192 (25%), Positives = 63/192 (32%), Gaps = 37/192 (19%)
Query: 8 GAAGGLNRDSPGGAA--RGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSG-----GSVTH 60
G G P GA RG P+ G+ G+P G H+G G H
Sbjct: 979 GETGPSGPVGPAGAVGPRG-PSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGH 1037
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNP--------GGFNIPGPRTSVSRAS 112
P GS PR A S +G++ G I GP+ A
Sbjct: 1038 HGDQGAP-------GSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAG 1090
Query: 113 SPGPGGPAGQEVNSPG-------------CSPHSGPTCLNPQNSQQDRPRSILRKNSSNL 159
PGP GP G S G P S P+ L P++ + D L L
Sbjct: 1091 PPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPS-LRPKDYEVDATLKSLNNQIETL 1149
Query: 160 MQKSPNVENPRR 171
+ + +NP R
Sbjct: 1150 LTPEGSRKNPAR 1161
Score = 30.0 bits (66), Expect = 3.7
Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 15 RDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVL 74
+ PG TG G+ RV GP G S GS P G +
Sbjct: 198 KGEPGAPGENGTPGQTGARGLPGERGRV---GAPGPAGARG-----SDGSVGPVGPAGPI 249
Query: 75 GS-GPSQHP-REAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPH 132
GS GP P +G+ N G GPR V GP GP G +PG +
Sbjct: 250 GSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPG----NPGANGL 305
Query: 133 SG 134
+G
Sbjct: 306 TG 307
Score = 30.0 bits (66), Expect = 3.7
Identities = 37/149 (24%), Positives = 50/149 (33%), Gaps = 29/149 (19%)
Query: 24 GVPAA--VTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLGS-GPSQ 80
G P A +TG + AG P P + + G++ +G ++G GP+
Sbjct: 298 GNPGANGLTGAKGAAGLPGVA-----GAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAG 352
Query: 81 HPREAANH----SLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQE------------- 123
E+ N S G PG G R A S GP GP G
Sbjct: 353 SKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADG 412
Query: 124 ----VNSPGCSPHSGPTCLNPQNSQQDRP 148
+ PG SGP + N RP
Sbjct: 413 RAGVMGPPGSRGASGPAGVRGPNGDAGRP 441
Score = 30.0 bits (66), Expect = 3.7
Identities = 41/149 (27%), Positives = 49/149 (32%), Gaps = 22/149 (14%)
Query: 7 LGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHS-TGSS 65
+GAAG + G PA G G+P GP G + GS+
Sbjct: 333 VGAAGATG--ARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSA 390
Query: 66 CPSGGIVVLGSG-----PSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPG----- 115
P G + GS P R GS G + GP R PG
Sbjct: 391 GPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPR 450
Query: 116 --PG-----GPAGQE--VNSPGCSPHSGP 135
PG GPAG+E V PG GP
Sbjct: 451 GLPGSPGNIGPAGKEGPVGLPGIDGRPGP 479
Score = 29.3 bits (64), Expect = 6.3
Identities = 34/127 (26%), Positives = 41/127 (32%), Gaps = 14/127 (11%)
Query: 6 SLGAAGGLNRDSPGG--AARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTG 63
S G G ++ P G G P + G G+P + GP T G
Sbjct: 455 SPGNIGPAGKEGPVGLPGIDGRPGPI-GPAGARGEPGNIGFPGPKGP--------TGDPG 505
Query: 64 SSCPSG--GIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAG 121
+ G G+ P A G GG GP PGP GPAG
Sbjct: 506 KNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAG 565
Query: 122 QEVNSPG 128
EV PG
Sbjct: 566 -EVGKPG 571
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 38.1 bits (87), Expect = 0.014
Identities = 38/123 (30%), Positives = 46/123 (37%), Gaps = 12/123 (9%)
Query: 15 RDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVL 74
R + GG + G P G G +V G PH GG + +S+G G +
Sbjct: 723 RGARGGRSGGGPPNGRGGPGGG-----MVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGM 777
Query: 75 GSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSP--GPGGPAGQEVNSPGCSPH 132
GSG P E S+G G PG S P GPGG G G PH
Sbjct: 778 GSG--HRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGA---GGGHRPH 832
Query: 133 SGP 135
GP
Sbjct: 833 EGP 835
Score = 33.9 bits (76), Expect = 0.26
Identities = 38/132 (28%), Positives = 42/132 (31%), Gaps = 29/132 (21%)
Query: 7 LGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTG--- 63
+G G + PGG G G S G PH GGS+ G
Sbjct: 746 VGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGS------GHRPHEGPGGSMGGGGGHRP 799
Query: 64 SSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQE 123
P GGI G P E G G GG + P GPGG G
Sbjct: 800 HEGPGGGI---SGGSGHRPHEGP----GGGMGAGGGHRP----------HEGPGGSMG-- 840
Query: 124 VNSPGCSPHSGP 135
S G PH GP
Sbjct: 841 -GSGGHRPHEGP 851
Score = 33.1 bits (74), Expect = 0.44
Identities = 45/148 (30%), Positives = 47/148 (31%), Gaps = 29/148 (19%)
Query: 7 LGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSV-THSTGSS 65
LG N PGG G P + G G P GPH GG V G
Sbjct: 620 LGPGPIANGFPPGGP--GGPKGMQHFPPGPGGPM-------PGPHGGPGGPVGPRLLGPP 670
Query: 66 CPSGGIVVLGSGPSQHPREAANHSLGSGRNPG---------GFNIPGP-----RTSVSRA 111
P G GP P G G PG G N P P R +
Sbjct: 671 PPPRGGDPFWDGPGD-PMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR 729
Query: 112 SSPGP----GGPAGQEVNSPGCSPHSGP 135
S GP GGP G V G PH GP
Sbjct: 730 SGGGPPNGRGGPGGGMVGGGGHRPHEGP 757
Score = 30.4 bits (67), Expect = 2.8
Identities = 29/115 (25%), Positives = 37/115 (32%), Gaps = 21/115 (18%)
Query: 47 GSGPHVHSGGSVTHSTGSSCPSGGIVVLGSGPSQHPREAANHSLG--------SGRNPGG 98
G PH GG ++ +G G +G+G P E S+G G GG
Sbjct: 796 GHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGG 855
Query: 99 ------FNIPGPRTSVSRASSP-------GPGGPAGQEVNSPGCSPHSGPTCLNP 140
++PG R R P GPG G G H G P
Sbjct: 856 PHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGHGGGGHRGHDGGHSHGGDMSNRP 910
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 38.1 bits (87), Expect = 0.014
Identities = 45/160 (28%), Positives = 59/160 (36%), Gaps = 20/160 (12%)
Query: 16 DSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLG 75
D P GA G G G G F G G GG + G GG+ G
Sbjct: 60 DKPKGAGAGGGGG--GFGGGGG-------FGGGGG---GGGGGSFGGGGPPGLGGLFQAG 107
Query: 76 SGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPHSGP 135
R AN SG + PG R++ ++ SP P GP V SPG SGP
Sbjct: 108 MPKL---RSTANRDNDSGGSRPPLLPPGGRSTSAKPFSP-PSGPGRFPVPSPG--HRSGP 161
Query: 136 TCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQH 175
PQ ++ PR + ++ P+ P + S H
Sbjct: 162 P--EPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPH 199
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 38.1 bits (87), Expect = 0.014
Identities = 45/160 (28%), Positives = 59/160 (36%), Gaps = 20/160 (12%)
Query: 16 DSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLG 75
D P GA G G G G F G G GG + G GG+ G
Sbjct: 60 DKPKGAGAGGGGG--GFGGGGG-------FGGGGG---GGGGGSFGGGGPPGLGGLFQAG 107
Query: 76 SGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPHSGP 135
R AN SG + PG R++ ++ SP P GP V SPG SGP
Sbjct: 108 MPKL---RSTANRDNDSGGSRPPLLPPGGRSTSAKPFSP-PSGPGRFPVPSPG--HRSGP 161
Query: 136 TCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRRKSQH 175
PQ ++ PR + ++ P+ P + S H
Sbjct: 162 P--EPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPH 199
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 36.6 bits (83), Expect = 0.039
Identities = 39/130 (30%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 15 RDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGG----SVTHSTGSSCPSGG 70
R PG R PA G GQP GP +GG + G + P+G
Sbjct: 326 RGLPGERGRTGPAGAAGARGNDGQPGPA---GPPGPVGPAGGPGFPGAPGAKGEAGPTGA 382
Query: 71 IVVLGS-GPSQHPREAANHS-LGSGRNPGGFNIPGPRTSVSR---ASSPGPGGPAGQEVN 125
G+ GP P + G+ NPG IPG + S A +PG GP G
Sbjct: 383 RGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG---- 438
Query: 126 SPGCSPHSGP 135
PG +GP
Sbjct: 439 PPGPQGATGP 448
Score = 35.8 bits (81), Expect = 0.067
Identities = 45/140 (32%), Positives = 54/140 (38%), Gaps = 30/140 (21%)
Query: 8 GAAGGLNRDSPGGAARGV--PAAVTGVEAGAGQPSRVVL-----FHG----SGPHVHSGG 56
GA G + P GA RG+ P G + AG+P L F G GP SG
Sbjct: 1092 GAQGPMGPSGPAGA-RGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGD 1150
Query: 57 SVTHSTGSSCPSGGIVVLGSGPSQHPREAANHSL-GSGRNPGGFNIPGPRTSVSRASSPG 115
G+S P+G SGP P G+ PG PGPR R+ G
Sbjct: 1151 Q-----GASGPAGP-----SGPRGPPGPVGPSGKDGANGIPGPIGPPGPR---GRSGETG 1197
Query: 116 PGGPAGQEVNSPGCSPHSGP 135
P GP G +PG GP
Sbjct: 1198 PAGPPG----NPGPPGPPGP 1213
Score = 34.7 bits (78), Expect = 0.15
Identities = 41/137 (29%), Positives = 50/137 (36%), Gaps = 17/137 (12%)
Query: 8 GAAG--GLNRDSPGGAARGVPAA--VTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTG 63
G AG G N D G+P A +TG AG +V G G G
Sbjct: 537 GLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG-----PPG 591
Query: 64 SSCPSGGIVVLG----SGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGP 119
G V+G G + P +A L PG +PG A PGP GP
Sbjct: 592 PQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGA--PGLRGLPGKDGETGAAGPPGPAGP 649
Query: 120 AGQ--EVNSPGCSPHSG 134
AG+ E +PG S G
Sbjct: 650 AGERGEQGAPGPSGFQG 666
Score = 33.9 bits (76), Expect = 0.26
Identities = 39/134 (29%), Positives = 45/134 (33%), Gaps = 14/134 (10%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH------- 60
GAAG D G A G P V G G G P +GP G
Sbjct: 339 GAAGARGNDGQPGPA-GPPGPV-GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG 396
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
+ GS P+G P A S G+ G PGPR + GP GP
Sbjct: 397 TPGSPGPAGA----SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 452
Query: 121 GQEVNSPGCSPHSG 134
GQ PG + G
Sbjct: 453 GQ-TGEPGIAGFKG 465
Score = 33.1 bits (74), Expect = 0.44
Identities = 47/165 (28%), Positives = 59/165 (35%), Gaps = 25/165 (15%)
Query: 3 KVESLGAAGGLNRDSPGG--AARGVPAAV--TGVEAGAGQPSRVVLFHGSG-PHVHSGGS 57
KV GA G R P G ARG P + G + G+P + G P +
Sbjct: 574 KVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPG 633
Query: 58 VTHSTGSSCPSGGIVVLGS-GPSQHPREAANHSL-------GSGRNPGGFNIPGPRTSVS 109
TG++ P G G G P + L G G PG +PG
Sbjct: 634 KDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG------ 687
Query: 110 RASSPGPGGPAGQ-----EVNSPGCSPHSGPTCLNPQNSQQDRPR 149
A +PG GP G+ E SPG GP L P D P+
Sbjct: 688 EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGL-PGTPGTDGPK 731
Score = 33.1 bits (74), Expect = 0.44
Identities = 48/174 (27%), Positives = 57/174 (32%), Gaps = 37/174 (21%)
Query: 8 GAAGGLNRDSPGGAA--RGVP--AAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTG 63
G G +D P GA G P A G++ AG P GP SG
Sbjct: 918 GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGP---SGAEGPPGPQ 974
Query: 64 SSCPSGGIVVLGS-----------GPSQHP-REAANHSLGSGRNPGGFNIPG---PRTSV 108
GIV L GPS P ++ A + G PG PG P
Sbjct: 975 GLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 1034
Query: 109 SRASSPGPGGPAGQE--------------VNSPGC-SPHSGPTCLNPQNSQQDR 147
R SPG GP G++ V +PG P P P Q DR
Sbjct: 1035 GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR 1088
Score = 32.7 bits (73), Expect = 0.57
Identities = 40/132 (30%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 6 SLGAAGGLNRDSPGGAA--RGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTG 63
S GA G RD G RG AV G G P +G G + + G
Sbjct: 1039 SPGADGPPGRDGAAGVKGDRGETGAV-GAPGAPGPPGSPGPAGPTGKQGDRGEA--GAQG 1095
Query: 64 SSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQE 123
PSG G Q PR G PG + G R PGP GP+G +
Sbjct: 1096 PMGPSGPAGARGIQGPQGPRG----DKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQ 1151
Query: 124 VNSPGCSPHSGP 135
S P SGP
Sbjct: 1152 GASGPAGP-SGP 1162
Score = 32.3 bits (72), Expect = 0.74
Identities = 41/137 (29%), Positives = 50/137 (36%), Gaps = 27/137 (19%)
Query: 8 GAAGGLNRDSPGGAA--RGVPAA-----VTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
GA G P G A G P A G + AGQ GP SG
Sbjct: 819 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA---GAPGPQGPSG----- 870
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGR--NPGGFNIPGPRTSVSRASSPGPGG 118
+ G P+G G+ +Q P A +GR PG PGP PGP G
Sbjct: 871 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP---------PGPPG 921
Query: 119 PAGQEVNSPGCSPHSGP 135
P+G++ G SGP
Sbjct: 922 PSGKD-GPKGARGDSGP 937
Score = 30.4 bits (67), Expect = 2.8
Identities = 35/135 (25%), Positives = 43/135 (31%), Gaps = 11/135 (8%)
Query: 7 LGAAGGLN-RDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSS 65
+G AGG +PG P G E G GP SG T +
Sbjct: 359 VGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGA 418
Query: 66 CPSGGIVVLGSGPS-QHPR-----EAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGP 119
S G + P PR + A LG G I G + PGP GP
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 120 AGQEVNSPGCSPHSG 134
G +PG + G
Sbjct: 479 QG----APGPAGEEG 489
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 36.6 bits (83), Expect = 0.039
Identities = 39/130 (30%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 15 RDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGG----SVTHSTGSSCPSGG 70
R PG R PA G GQP GP +GG + G + P+G
Sbjct: 257 RGLPGERGRTGPAGAAGARGNDGQPGPA---GPPGPVGPAGGPGFPGAPGAKGEAGPTGA 313
Query: 71 IVVLGS-GPSQHPREAANHS-LGSGRNPGGFNIPGPRTSVSR---ASSPGPGGPAGQEVN 125
G+ GP P + G+ NPG IPG + S A +PG GP G
Sbjct: 314 RGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG---- 369
Query: 126 SPGCSPHSGP 135
PG +GP
Sbjct: 370 PPGPQGATGP 379
Score = 35.8 bits (81), Expect = 0.067
Identities = 45/140 (32%), Positives = 54/140 (38%), Gaps = 30/140 (21%)
Query: 8 GAAGGLNRDSPGGAARGV--PAAVTGVEAGAGQPSRVVL-----FHG----SGPHVHSGG 56
GA G + P GA RG+ P G + AG+P L F G GP SG
Sbjct: 1023 GAQGPMGPSGPAGA-RGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGD 1081
Query: 57 SVTHSTGSSCPSGGIVVLGSGPSQHPREAANHSL-GSGRNPGGFNIPGPRTSVSRASSPG 115
G+S P+G SGP P G+ PG PGPR R+ G
Sbjct: 1082 Q-----GASGPAGP-----SGPRGPPGPVGPSGKDGANGIPGPIGPPGPR---GRSGETG 1128
Query: 116 PGGPAGQEVNSPGCSPHSGP 135
P GP G +PG GP
Sbjct: 1129 PAGPPG----NPGPPGPPGP 1144
Score = 34.7 bits (78), Expect = 0.15
Identities = 41/137 (29%), Positives = 50/137 (36%), Gaps = 17/137 (12%)
Query: 8 GAAG--GLNRDSPGGAARGVPAA--VTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTG 63
G AG G N D G+P A +TG AG +V G G G
Sbjct: 468 GLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG-----PPG 522
Query: 64 SSCPSGGIVVLG----SGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGP 119
G V+G G + P +A L PG +PG A PGP GP
Sbjct: 523 PQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGA--PGLRGLPGKDGETGAAGPPGPAGP 580
Query: 120 AGQ--EVNSPGCSPHSG 134
AG+ E +PG S G
Sbjct: 581 AGERGEQGAPGPSGFQG 597
Score = 33.9 bits (76), Expect = 0.26
Identities = 39/134 (29%), Positives = 45/134 (33%), Gaps = 14/134 (10%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH------- 60
GAAG D G A G P V G G G P +GP G
Sbjct: 270 GAAGARGNDGQPGPA-GPPGPV-GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG 327
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPA 120
+ GS P+G P A S G+ G PGPR + GP GP
Sbjct: 328 TPGSPGPAGA----SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 383
Query: 121 GQEVNSPGCSPHSG 134
GQ PG + G
Sbjct: 384 GQ-TGEPGIAGFKG 396
Score = 33.1 bits (74), Expect = 0.44
Identities = 47/165 (28%), Positives = 59/165 (35%), Gaps = 25/165 (15%)
Query: 3 KVESLGAAGGLNRDSPGG--AARGVPAAV--TGVEAGAGQPSRVVLFHGSG-PHVHSGGS 57
KV GA G R P G ARG P + G + G+P + G P +
Sbjct: 505 KVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPG 564
Query: 58 VTHSTGSSCPSGGIVVLGS-GPSQHPREAANHSL-------GSGRNPGGFNIPGPRTSVS 109
TG++ P G G G P + L G G PG +PG
Sbjct: 565 KDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG------ 618
Query: 110 RASSPGPGGPAGQ-----EVNSPGCSPHSGPTCLNPQNSQQDRPR 149
A +PG GP G+ E SPG GP L P D P+
Sbjct: 619 EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGL-PGTPGTDGPK 662
Score = 33.1 bits (74), Expect = 0.44
Identities = 48/174 (27%), Positives = 57/174 (32%), Gaps = 37/174 (21%)
Query: 8 GAAGGLNRDSPGGAA--RGVP--AAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTG 63
G G +D P GA G P A G++ AG P GP SG
Sbjct: 849 GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGP---SGAEGPPGPQ 905
Query: 64 SSCPSGGIVVLGS-----------GPSQHP-REAANHSLGSGRNPGGFNIPG---PRTSV 108
GIV L GPS P ++ A + G PG PG P
Sbjct: 906 GLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 965
Query: 109 SRASSPGPGGPAGQE--------------VNSPGC-SPHSGPTCLNPQNSQQDR 147
R SPG GP G++ V +PG P P P Q DR
Sbjct: 966 GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDR 1019
Score = 32.7 bits (73), Expect = 0.57
Identities = 40/132 (30%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 6 SLGAAGGLNRDSPGGAA--RGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTG 63
S GA G RD G RG AV G G P +G G + + G
Sbjct: 970 SPGADGPPGRDGAAGVKGDRGETGAV-GAPGAPGPPGSPGPAGPTGKQGDRGEA--GAQG 1026
Query: 64 SSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQE 123
PSG G Q PR G PG + G R PGP GP+G +
Sbjct: 1027 PMGPSGPAGARGIQGPQGPRG----DKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQ 1082
Query: 124 VNSPGCSPHSGP 135
S P SGP
Sbjct: 1083 GASGPAGP-SGP 1093
Score = 32.3 bits (72), Expect = 0.74
Identities = 41/137 (29%), Positives = 50/137 (36%), Gaps = 27/137 (19%)
Query: 8 GAAGGLNRDSPGGAA--RGVPAA-----VTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTH 60
GA G P G A G P A G + AGQ GP SG
Sbjct: 750 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA---GAPGPQGPSG----- 801
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGR--NPGGFNIPGPRTSVSRASSPGPGG 118
+ G P+G G+ +Q P A +GR PG PGP PGP G
Sbjct: 802 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP---------PGPPG 852
Query: 119 PAGQEVNSPGCSPHSGP 135
P+G++ G SGP
Sbjct: 853 PSGKD-GPKGARGDSGP 868
Score = 30.4 bits (67), Expect = 2.8
Identities = 35/135 (25%), Positives = 43/135 (31%), Gaps = 11/135 (8%)
Query: 7 LGAAGGLN-RDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSS 65
+G AGG +PG P G E G GP SG T +
Sbjct: 290 VGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGA 349
Query: 66 CPSGGIVVLGSGPS-QHPR-----EAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGP 119
S G + P PR + A LG G I G + PGP GP
Sbjct: 350 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 120 AGQEVNSPGCSPHSG 134
G +PG + G
Sbjct: 410 QG----APGPAGEEG 420
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 36.6 bits (83), Expect = 0.039
Identities = 35/119 (29%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 8 GAAGGLNRDSPGG--AARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSG-GSVTHSTGS 64
GA G + P G A G P G+ GAG+P + GP G + G+
Sbjct: 405 GAPGLMGARGPPGPAGANGAP----GLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGA 460
Query: 65 SCPSGGIVVLGS-GPSQHPREAANHSLGSGRNPGGFN-IPGPRTSVSRASSPGPGGPAG 121
G G G + P A R P G N IPG + +PGP GP G
Sbjct: 461 KGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRG 519
Score = 36.6 bits (83), Expect = 0.039
Identities = 45/146 (30%), Positives = 49/146 (33%), Gaps = 21/146 (14%)
Query: 8 GAAGGLNRD-SPGGAA----RGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHST 62
G+ G RD SPGG G P A G G P V SG SG +
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGA-PGAPGHPGPPGPVGPAGKSGDRGESGPA--GPA 1073
Query: 63 GSSCPSGGIVVLG-SGPSQHPREAANHSL-------GSGRNPGGFNIPGPRTSVSRASSP 114
G+ P+G G GP E G NPG PGP SP
Sbjct: 1074 GAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSP 1133
Query: 115 GPGGPAGQ-----EVNSPGCSPHSGP 135
GP GP G G S H GP
Sbjct: 1134 GPAGPRGPVGPSGPPGKDGTSGHPGP 1159
Score = 36.2 bits (82), Expect = 0.051
Identities = 37/118 (31%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 8 GAAGGLNRDSPGGAARGVPA--AVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHST-GS 64
G G P GAA G P + G G G P G GG G
Sbjct: 705 GGKGAAGPPGPPGAA-GTPGLQGMPGERGGLGSPGP------KGDKGEPGGPGADGVPGK 757
Query: 65 SCPSGGIVVLGS-GPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAG 121
P G +G GP+ P + G G PG I GPR S GP GPAG
Sbjct: 758 DGPRGPTGPIGPPGPAGQPGDK-----GEGGAPGLPGIAGPRGSPGERGETGPPGPAG 810
Score = 34.7 bits (78), Expect = 0.15
Identities = 41/134 (30%), Positives = 48/134 (35%), Gaps = 33/134 (24%)
Query: 10 AGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSG 69
A G N + G RG P E G G P V +GP GGS G + P G
Sbjct: 814 APGQNGEPGGKGERGAPG-----EKGEGGPPGV-----AGP---PGGS-----GPAGPPG 855
Query: 70 GIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQE------ 123
V G S AA PG +PGP S PGP G G++
Sbjct: 856 PQGVKGERGSPGGPGAAGF-------PGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908
Query: 124 --VNSPGCSPHSGP 135
+PG SGP
Sbjct: 909 GNTGAPGSPGVSGP 922
Score = 34.3 bits (77), Expect = 0.20
Identities = 47/174 (27%), Positives = 62/174 (35%), Gaps = 31/174 (17%)
Query: 8 GAAGGLNRDSPGGAA--RGVPAA--VTGVEAGAGQPSRVVLFHGSGPHVHSG----GSVT 59
G +G +D P G A G P + V+G + AGQP GP G +T
Sbjct: 894 GPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGIT 953
Query: 60 HSTGSSCPSGGIVVLGS-GPS----QHPREAANHSLGSGRNPGGFNIPGPRTSVS----- 109
+ G + P G GS GP + + AN G PG +PG +
Sbjct: 954 GARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRD 1013
Query: 110 ----------RASSPGPGGPAGQ--EVNSPGCSPHSGPT-CLNPQNSQQDRPRS 150
R SPG G G+ +PG H GP + P DR S
Sbjct: 1014 GNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGES 1067
Score = 34.3 bits (77), Expect = 0.20
Identities = 39/136 (28%), Positives = 48/136 (35%), Gaps = 12/136 (8%)
Query: 8 GAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSG-GSVTHSTGSSC 66
G AG P G+ RG P G + G +G H G + GS
Sbjct: 1068 GPAGPAGAPGPAGS-RGAP----GPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 1122
Query: 67 PSGGIVVLGSGPSQHPREAANHSLGSGRN-----PGGFNIPGPRTSVSRASSPGPGGPAG 121
P+G +GS PR S G++ PG PGPR + S G G G
Sbjct: 1123 PAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPG 1182
Query: 122 QEVNSPGCSPHSGPTC 137
Q PG GP C
Sbjct: 1183 QP-GPPGPPGAPGPCC 1197
Score = 33.9 bits (76), Expect = 0.26
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 91 GSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPHSGP 135
GS PG PGP S + PGP GP+G PG GP
Sbjct: 540 GSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPR-GQPGVMGFPGP 583
Score = 33.9 bits (76), Expect = 0.26
Identities = 43/137 (31%), Positives = 50/137 (36%), Gaps = 21/137 (15%)
Query: 8 GAAGGLNRDSPGGAARGVP--AAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHST-GS 64
GA GG D+ RG P A G+ GAG P +GP G + T G
Sbjct: 669 GAPGGKG-DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGM 727
Query: 65 SCPSGGIVVLGS-GPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQ- 122
GG LGS GP E PG +PG GP GPAGQ
Sbjct: 728 PGERGG---LGSPGPKGDKGEPGG--------PGADGVPGKDGPRGPTGPIGPPGPAGQP 776
Query: 123 ----EVNSPGCSPHSGP 135
E +PG +GP
Sbjct: 777 GDKGEGGAPGLPGIAGP 793
Score = 33.5 bits (75), Expect = 0.33
Identities = 39/121 (32%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 8 GAAGGLNRDS-PGGAA-RGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHST-GS 64
GAAG RD PGG RG+P + G G+P GP G S G
Sbjct: 519 GAAGEPGRDGVPGGPGMRGMPGSPGG-PGSDGKP---------GPPGSQGESGRPGPPGP 568
Query: 65 SCPSGGIVVLG-SGPSQHP-REAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQ 122
S P G V+G GP + N G PG PG PGP GP G
Sbjct: 569 SGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGD 628
Query: 123 E 123
+
Sbjct: 629 K 629
Score = 33.1 bits (74), Expect = 0.44
Identities = 34/133 (25%), Positives = 41/133 (30%), Gaps = 15/133 (11%)
Query: 8 GAAGGLN-RDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSC 66
G GG R +PG G P V G G+G +GP G +
Sbjct: 819 GEPGGKGERGAPGEKGEGGPPGVAGPPGGSGP---------AGPPGPQGVKGERGSPGGP 869
Query: 67 PSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQ---- 122
+ G P G +PG PGP + SPG GP G
Sbjct: 870 GAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQP 929
Query: 123 -EVNSPGCSPHSG 134
E SPG G
Sbjct: 930 GEKGSPGAQGPPG 942
Score = 32.0 bits (71), Expect = 0.97
Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 9/133 (6%)
Query: 18 PGGAARGVPAAVTGVEAGAGQPSRVVLFHG--SGPHVHSGGSVTHSTGSSCPSGGIVVLG 75
PG R + G G P + +GP +S ++ S GG+
Sbjct: 114 PGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGY- 172
Query: 76 SGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPHSGP 135
GP+ P G+ +PG PG + GP GP G PG SGP
Sbjct: 173 PGPAGPPGPPGPP--GTSGHPGSPGSPGYQGPPGEPGQAGPSGPPG----PPGAIGPSGP 226
Query: 136 TCLNPQNSQQDRP 148
+ ++ + RP
Sbjct: 227 AGKDGESGRPGRP 239
Score = 30.4 bits (67), Expect = 2.8
Identities = 36/128 (28%), Positives = 44/128 (34%), Gaps = 9/128 (7%)
Query: 10 AGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSG 69
A GL ++ G P + G G+ R L +G + G S G P G
Sbjct: 280 APGLKGENGLPGENGAPGPM-GPRGAPGERGRPGLPGAAGARGNDGAR--GSDGQPGPPG 336
Query: 70 --GIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSP 127
G P S GS PG PGP+ A + GP GP G SP
Sbjct: 337 PPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQ---GHAGAQGPPGPPGIN-GSP 392
Query: 128 GCSPHSGP 135
G GP
Sbjct: 393 GGKGEMGP 400
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 36.6 bits (83), Expect = 0.039
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 61 STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASS------- 113
S ++ + G++ + + P +A+ LGS P G N P +S AS
Sbjct: 209 SAAATAAATGLLDSPTSITPPPILSADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGL 268
Query: 114 PGPGGPAGQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRR 171
PG G P SPH + +PQ+S D+ + +SS+ SP ++N RR
Sbjct: 269 PGGGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNSRR 326
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 36.6 bits (83), Expect = 0.039
Identities = 37/140 (26%), Positives = 47/140 (33%), Gaps = 20/140 (14%)
Query: 4 VESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTG 63
V+ +G G P G P+ G G P + GP + + G
Sbjct: 277 VDGVGVPGAAGLPGPQG-----PSGAKGEPGTRGPPGLI------GPTGYGMPGLPGPKG 325
Query: 64 SSCPSGGIVVLGS----GPSQHPREAANHSLGSGRN-PGGFNIPGPRTSVSRASSPGPGG 118
P+G +LG G P E LG PG +PG R GPGG
Sbjct: 326 DRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGG 385
Query: 119 PAGQEVNSPGCSPHSGPTCL 138
P G PG GP+ L
Sbjct: 386 PPG----VPGIRGDQGPSGL 401
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sapiens]
Length = 1555
Score = 36.6 bits (83), Expect = 0.039
Identities = 34/105 (32%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
Query: 33 EAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLGSGPSQHPREAANHSLGS 92
E GQP + F G P V GG + G S P GG+ + G PR H+L
Sbjct: 983 EGPHGQPGVGIRFEG--PLVQQGGGMRFE-GPSVPGGGLRIEGPLGQGGPRFEGCHALRF 1039
Query: 93 GRNPGGFNI----------PGPRTSVSRASSPGP---GGPAGQEV 124
PG ++ PGPR PGP GP GQ+V
Sbjct: 1040 DGQPGQPSLLPRFDGLHGQPGPRFE-RTPGQPGPQRFDGPPGQQV 1083
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 36.2 bits (82), Expect = 0.051
Identities = 35/118 (29%), Positives = 40/118 (33%), Gaps = 19/118 (16%)
Query: 17 SPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLGS 76
SPG P G AG P +G G + G P G +
Sbjct: 1664 SPGAPGEQGPPGTPGFPGNAGVPGTPGERGLTGIKGEKGNPGVGTQGPRGPPGP-----A 1718
Query: 77 GPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPG-CSPHS 133
GPS R + PG PGPR PGP GP+GQ PG C P S
Sbjct: 1719 GPSGESRPGS---------PGPPGSPGPRGPPGHLGVPGPQGPSGQ----PGYCDPSS 1763
Score = 32.0 bits (71), Expect = 0.97
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 89 SLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPHSGP 135
+LG PGG + GP+ GP GP G E+ PG GP
Sbjct: 1460 ALGPAGPPGGPGLRGPKGQQGEPGPKGPDGPRG-EIGLPGPQGPPGP 1505
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 35.8 bits (81), Expect = 0.067
Identities = 36/127 (28%), Positives = 46/127 (36%), Gaps = 14/127 (11%)
Query: 15 RDSPGGAARGVPAAVTG-VEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVV 73
R+ GG A AA G ++A AGQ S P S G GG
Sbjct: 32 REEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGG--GGGGAG 89
Query: 74 LGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPHS 133
G GP P +S G+ GPR +++ + PGG G + G PHS
Sbjct: 90 SGGGPGAEPD--LKNSNGNA---------GPRPALNNNLTEPPGGGGGGSSDGVGAPPHS 138
Query: 134 GPTCLNP 140
L P
Sbjct: 139 AAAALPP 145
Score = 31.2 bits (69), Expect = 1.7
Identities = 38/140 (27%), Positives = 49/140 (35%), Gaps = 11/140 (7%)
Query: 5 ESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQ-----PSRVVLFHGSGPHVHSGGSVT 59
E G GG + D G AA+ G GQ PS V + H GG +
Sbjct: 119 EPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQS 178
Query: 60 HSTGS-SCPSGGIVVLGSGPSQ--HPREAANHSLGS-GRNPGGFNIPGPRTSVS--RASS 113
+ GG + +GP Q H NH S N + P P ++S R +
Sbjct: 179 PGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGT 238
Query: 114 PGPGGPAGQEVNSPGCSPHS 133
PG G A P S S
Sbjct: 239 PGSGAAAAAGSKPPPSSSAS 258
Score = 29.6 bits (65), Expect = 4.8
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 6 SLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSS 65
S G AGG+N GG G P G+ S + G+ P+ + ++ GS
Sbjct: 825 SAGMAGGINPMGAGGQMHGQPGIPPYGTLPPGRMSHASM--GNRPYGPNMANMPPQVGSG 882
Query: 66 -CPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEV 124
CP G G A H + N P ++++ G G P GQ +
Sbjct: 883 MCPPPG----GMNRKTQETAVAMHVAANSIQ----NRPPGYPNMNQGGMMGTGPPYGQGI 934
Query: 125 NS 126
NS
Sbjct: 935 NS 936
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 35.8 bits (81), Expect = 0.067
Identities = 36/127 (28%), Positives = 46/127 (36%), Gaps = 14/127 (11%)
Query: 15 RDSPGGAARGVPAAVTG-VEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSSCPSGGIVV 73
R+ GG A AA G ++A AGQ S P S G GG
Sbjct: 32 REEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGG--GGGGAG 89
Query: 74 LGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEVNSPGCSPHS 133
G GP P +S G+ GPR +++ + PGG G + G PHS
Sbjct: 90 SGGGPGAEPD--LKNSNGNA---------GPRPALNNNLTEPPGGGGGGSSDGVGAPPHS 138
Query: 134 GPTCLNP 140
L P
Sbjct: 139 AAAALPP 145
Score = 31.2 bits (69), Expect = 1.7
Identities = 38/140 (27%), Positives = 49/140 (35%), Gaps = 11/140 (7%)
Query: 5 ESLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQ-----PSRVVLFHGSGPHVHSGGSVT 59
E G GG + D G AA+ G GQ PS V + H GG +
Sbjct: 119 EPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQS 178
Query: 60 HSTGS-SCPSGGIVVLGSGPSQ--HPREAANHSLGS-GRNPGGFNIPGPRTSVS--RASS 113
+ GG + +GP Q H NH S N + P P ++S R +
Sbjct: 179 PGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGT 238
Query: 114 PGPGGPAGQEVNSPGCSPHS 133
PG G A P S S
Sbjct: 239 PGSGAAAAAGSKPPPSSSAS 258
Score = 29.6 bits (65), Expect = 4.8
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 6 SLGAAGGLNRDSPGGAARGVPAAVTGVEAGAGQPSRVVLFHGSGPHVHSGGSVTHSTGSS 65
S G AGG+N GG G P G+ S + G+ P+ + ++ GS
Sbjct: 825 SAGMAGGINPMGAGGQMHGQPGIPPYGTLPPGRMSHASM--GNRPYGPNMANMPPQVGSG 882
Query: 66 -CPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASSPGPGGPAGQEV 124
CP G G A H + N P ++++ G G P GQ +
Sbjct: 883 MCPPPG----GMNRKTQETAVAMHVAANSIQ----NRPPGYPNMNQGGMMGTGPPYGQGI 934
Query: 125 NS 126
NS
Sbjct: 935 NS 936
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,489,029
Number of Sequences: 37866
Number of extensions: 1168732
Number of successful extensions: 6517
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 4766
Number of HSP's gapped (non-prelim): 1804
length of query: 387
length of database: 18,247,518
effective HSP length: 104
effective length of query: 283
effective length of database: 14,309,454
effective search space: 4049575482
effective search space used: 4049575482
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.