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Search of human proteins with 169210827
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169210827 PREDICTED: hypothetical protein [Homo sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169210827 PREDICTED: hypothetical protein [Homo sapiens] 297 2e-81
gi|113427091 PREDICTED: hypothetical protein [Homo sapiens] 32 0.22
gi|40806175 diacylglycerol kinase, theta [Homo sapiens] 31 0.37
gi|239756810 PREDICTED: hypothetical protein [Homo sapiens] 30 0.48
gi|239751292 PREDICTED: hypothetical protein XP_002347787 [Homo ... 30 0.48
gi|239745787 PREDICTED: hypothetical protein XP_002343554 [Homo ... 30 0.48
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 29 1.4
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 29 1.4
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens] 28 1.8
gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo ... 28 1.8
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 28 1.8
gi|4502175 apical protein of Xenopus-like [Homo sapiens] 28 1.8
gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens] 28 2.4
gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens] 28 2.4
gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens] 28 2.4
gi|163965434 dapper, antagonist of beta-catenin, homolog 2 [Homo... 28 2.4
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 28 3.1
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 28 3.1
gi|14719402 homolog of yeast ribosome biogenesis regulatory prot... 27 4.1
gi|194363768 homeobox D9 [Homo sapiens] 27 4.1
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens] 27 4.1
gi|239751736 PREDICTED: hypothetical protein [Homo sapiens] 27 4.1
gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo ... 27 4.1
gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo ... 27 4.1
gi|238550198 synaptotagmin III [Homo sapiens] 27 4.1
gi|238550196 synaptotagmin III [Homo sapiens] 27 4.1
gi|14150054 synaptotagmin III [Homo sapiens] 27 4.1
>gi|169210827 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 297 bits (761), Expect = 2e-81
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MRLGCSPSLAVEGMPRLAQESRVFSGSTPICCVILGPGRDPSGLCYWRKGKWLGRVGPQP 60
MRLGCSPSLAVEGMPRLAQESRVFSGSTPICCVILGPGRDPSGLCYWRKGKWLGRVGPQP
Sbjct: 1 MRLGCSPSLAVEGMPRLAQESRVFSGSTPICCVILGPGRDPSGLCYWRKGKWLGRVGPQP 60
Query: 61 SLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKARHMPLIWELGLTPSPSPAHL 120
SLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKARHMPLIWELGLTPSPSPAHL
Sbjct: 61 SLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKARHMPLIWELGLTPSPSPAHL 120
Query: 121 EHMALAHLPCGWTLSSPGS 139
EHMALAHLPCGWTLSSPGS
Sbjct: 121 EHMALAHLPCGWTLSSPGS 139
>gi|113427091 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 31.6 bits (70), Expect = 0.22
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 1 MRLGCSPSLAVEG--MPRLAQESRVFSGSTPICCVI-LGPGRDPSGLCYWRKGKWLGRVG 57
+ +G +L ++G + + + SR +S S P CC+ LG G D S W VG
Sbjct: 41 INVGLPEALHLQGATLSHIPRPSRAWS-SFPCCCLWDLGGGFDKS---------WSSSVG 90
Query: 58 PQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRG 98
+ + G + WG+ G G+S +P G
Sbjct: 91 GEGEIQGQVACSPAWGRGTQPSGAEKGTSRHPELPGMDDMG 131
>gi|40806175 diacylglycerol kinase, theta [Homo sapiens]
Length = 942
Score = 30.8 bits (68), Expect = 0.37
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 52 WLGRVGPQPSLPGGLRVGGLWGKARAGPGESLG 84
WLG P+P P V G G+AR GPG G
Sbjct: 12 WLGGGSPRPGSPACSPVLGSGGRARPGPGPGPG 44
>gi|239756810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 30.4 bits (67), Expect = 0.48
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 37 PGRDPSGLCYWRKGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNR-----V 91
P R G R K LG P LPG VGG WGK LG+ R V
Sbjct: 6 PCRQSFGCRGCRHQKCLGGTVPVACLPG--LVGGCWGKGLGAGPAPLGTRACWRAPRWPV 63
Query: 92 PSSQSRGKARHMPL 105
P + R + RH+ L
Sbjct: 64 PVAGPRKQGRHLYL 77
>gi|239751292 PREDICTED: hypothetical protein XP_002347787 [Homo
sapiens]
Length = 207
Score = 30.4 bits (67), Expect = 0.48
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 37 PGRDPSGLCYWRKGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNR-----V 91
P R G R K LG P LPG VGG WGK LG+ R V
Sbjct: 6 PCRQSFGCRGCRHQKCLGGTVPVACLPG--LVGGCWGKGLGAGPAPLGTRACWRAPRWPV 63
Query: 92 PSSQSRGKARHMPL 105
P + R + RH+ L
Sbjct: 64 PVAGPRKQGRHLYL 77
>gi|239745787 PREDICTED: hypothetical protein XP_002343554 [Homo
sapiens]
Length = 207
Score = 30.4 bits (67), Expect = 0.48
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 37 PGRDPSGLCYWRKGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNR-----V 91
P R G R K LG P LPG VGG WGK LG+ R V
Sbjct: 6 PCRQSFGCRGCRHQKCLGGTVPVACLPG--LVGGCWGKGLGAGPAPLGTRACWRAPRWPV 63
Query: 92 PSSQSRGKARHMPL 105
P + R + RH+ L
Sbjct: 64 PVAGPRKQGRHLYL 77
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 27 STPICCVILGPGRDPSGLCYWRKGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSS 86
+ P C + GP P G + G G P P G RV G+W + R G +
Sbjct: 340 AAPSVCPVRGPPPRP-GTVRSQLGARANEGGGAPRPPAGARVFGVWARGRLRRGCHKCAD 398
Query: 87 LVNRVPSSQSR 97
R P + ++
Sbjct: 399 RAPRAPKAAAK 409
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 48 RKGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKARHMP 104
R+ +GR P+ PG LR L ARAG G G++ P + RG+ + P
Sbjct: 92 REDAGVGRRNRDPAEPGSLRPTSLGFPARAGQGRVQGAA-----PGRKLRGEPKTPP 143
>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 28.5 bits (62), Expect = 1.8
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 64 GGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKARHMPLIWELGLTPSPSPAHL 120
G L GG R P SSL S +RG A P W GL P+PA L
Sbjct: 127 GRLAAGGAEAGERRSPNRGATSSL-----SPIARGAADVRPFSWVGGLPRPPAPAAL 178
>gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo
sapiens]
Length = 217
Score = 28.5 bits (62), Expect = 1.8
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 64 GGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKARHMPLIWELGLTPSPSPAHL 120
G L GG R P SSL S +RG A P W GL P+PA L
Sbjct: 127 GRLAAGGAEAGERRSPNRGATSSL-----SPIARGAADVRPFSWVGGLPRPPAPAAL 178
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 28.5 bits (62), Expect = 1.8
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 60 PSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKARHMPLIWE 108
P PG R GG G GP + G V ++++RG A PL E
Sbjct: 155 PGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLE 203
>gi|4502175 apical protein of Xenopus-like [Homo sapiens]
Length = 1616
Score = 28.5 bits (62), Expect = 1.8
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 15 PRLAQESRVFSGSTPICCVILG--PGR---------DPSGLCYWRKGKWLGRVGPQPSLP 63
P + ++S +P+C LG PG GL + G GP+P +
Sbjct: 423 PHSGRHPPLYSDHSPLCADSLGQEPGAASFQNDSPPQVRGLSSCDQKLGSGWQGPRPCVQ 482
Query: 64 GGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKARHMP 104
G L+ LW A P ++ +L + P + + H+P
Sbjct: 483 GDLQAAQLW--AGCWPSDTALGALESLPPPTVGQSPRHHLP 521
>gi|238550210 Z-DNA binding protein 1 isoform c [Homo sapiens]
Length = 354
Score = 28.1 bits (61), Expect = 2.4
Identities = 38/148 (25%), Positives = 52/148 (35%), Gaps = 29/148 (19%)
Query: 1 MRLGCSPSLAVEGMPRLAQESRVFSGSTPICCVILGP-----------GRDPSGLCYWR- 48
++LG S + + G+P + + GS P+ GP G P G R
Sbjct: 189 VQLGHSNEMRLHGVPSEGP-AHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRI 247
Query: 49 -------KGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKAR 101
+ +G PG GG+ G PGE G R +QSR
Sbjct: 248 HMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAG----RRPADTQSRS--- 300
Query: 102 HMPLIWELGLTPSPS--PAHLEHMALAH 127
H P +TPS S LE M L +
Sbjct: 301 HFPRDIGQPITPSHSKLTPKLETMTLGN 328
>gi|238550208 Z-DNA binding protein 1 isoform b [Homo sapiens]
Length = 428
Score = 28.1 bits (61), Expect = 2.4
Identities = 38/148 (25%), Positives = 52/148 (35%), Gaps = 29/148 (19%)
Query: 1 MRLGCSPSLAVEGMPRLAQESRVFSGSTPICCVILGP-----------GRDPSGLCYWR- 48
++LG S + + G+P + + GS P+ GP G P G R
Sbjct: 263 VQLGHSNEMRLHGVPSEGP-AHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRI 321
Query: 49 -------KGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKAR 101
+ +G PG GG+ G PGE G R +QSR
Sbjct: 322 HMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAG----RRPADTQSRS--- 374
Query: 102 HMPLIWELGLTPSPS--PAHLEHMALAH 127
H P +TPS S LE M L +
Sbjct: 375 HFPRDIGQPITPSHSKLTPKLETMTLGN 402
>gi|238550206 Z-DNA binding protein 1 isoform a [Homo sapiens]
Length = 429
Score = 28.1 bits (61), Expect = 2.4
Identities = 38/148 (25%), Positives = 52/148 (35%), Gaps = 29/148 (19%)
Query: 1 MRLGCSPSLAVEGMPRLAQESRVFSGSTPICCVILGP-----------GRDPSGLCYWR- 48
++LG S + + G+P + + GS P+ GP G P G R
Sbjct: 264 VQLGHSNEMRLHGVPSEGP-AHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRI 322
Query: 49 -------KGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKAR 101
+ +G PG GG+ G PGE G R +QSR
Sbjct: 323 HMKSCFLEDATIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAG----RRPADTQSRS--- 375
Query: 102 HMPLIWELGLTPSPS--PAHLEHMALAH 127
H P +TPS S LE M L +
Sbjct: 376 HFPRDIGQPITPSHSKLTPKLETMTLGN 403
>gi|163965434 dapper, antagonist of beta-catenin, homolog 2 [Homo
sapiens]
Length = 774
Score = 28.1 bits (61), Expect = 2.4
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 33 VILGPGRDPSGLCYWRKGKWLGRVGPQPS----LPGGLRVGGLWGKA---------RAGP 79
++ PGR+ G +G GR GPQ L G + G L + R
Sbjct: 380 LVFAPGREDEGGPAQSRGA--GRGGPQQQGYMPLEGPQQSGSLPEEGSKPSNSCVLRETM 437
Query: 80 GESLGSSLVNRVPSSQSRGKARHMPLIWELGLTPSPSPAHLEHMALA 126
++ SS + PS+Q G+ + L +PSP+ H H + A
Sbjct: 438 VQASPSSKAQQTPSAQDYGRGNIISPSRMLDKSPSPASGHFAHPSFA 484
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 27.7 bits (60), Expect = 3.1
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 37 PGRD-PSGLCYWRKGKWLGRV-GPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSS 94
PGRD P CY G LG + GP+ GG G+W K +AG L R +
Sbjct: 367 PGRDRPLRDCY--SGPRLGYLRGPETRRRGG----GVWWKGKAG---RLAKRCGER-HEA 416
Query: 95 QSRGKARHMPLIWE---LGLTPSPSPA 118
+GK R P W P P+PA
Sbjct: 417 PEQGKPRLPPQAWHDQGRDAPPGPTPA 443
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 27.7 bits (60), Expect = 3.1
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 37 PGRD-PSGLCYWRKGKWLGRV-GPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSS 94
PGRD P CY G LG + GP+ GG G+W K +AG L R +
Sbjct: 695 PGRDRPLRDCY--SGPRLGYLRGPETRRRGG----GVWWKGKAG---RLAKRCGER-HEA 744
Query: 95 QSRGKARHMPLIWE---LGLTPSPSPA 118
+GK R P W P P+PA
Sbjct: 745 PEQGKPRLPPQAWHDQGRDAPPGPTPA 771
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 27.7 bits (60), Expect = 3.1
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 37 PGRD-PSGLCYWRKGKWLGRV-GPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSS 94
PGRD P CY G LG + GP+ GG G+W K +AG L R +
Sbjct: 695 PGRDRPLRDCY--SGPRLGYLRGPETRRRGG----GVWWKGKAG---RLAKRCGER-HEA 744
Query: 95 QSRGKARHMPLIWE---LGLTPSPSPA 118
+GK R P W P P+PA
Sbjct: 745 PEQGKPRLPPQAWHDQGRDAPPGPTPA 771
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 27.7 bits (60), Expect = 3.1
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 37 PGRD-PSGLCYWRKGKWLGRV-GPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSS 94
PGRD P CY G LG + GP+ GG G+W K +AG L R +
Sbjct: 695 PGRDRPLRDCY--SGPRLGYLRGPETRRRGG----GVWWKGKAG---RLAKRCGER-HEA 744
Query: 95 QSRGKARHMPLIWE---LGLTPSPSPA 118
+GK R P W P P+PA
Sbjct: 745 PEQGKPRLPPQAWHDQGRDAPPGPTPA 771
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 27.7 bits (60), Expect = 3.1
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 78 GPGESLGSSLVNRVPSSQSRGKARHMPLIWELGLTPSPSP 117
GP G LVNR PSS G R PL E G P P
Sbjct: 2954 GPTLPTGLELVNRPPSSTELG--RPNPLALEAGKLPCEDP 2991
>gi|14719402 homolog of yeast ribosome biogenesis regulatory protein
RRS1 [Homo sapiens]
Length = 365
Score = 27.3 bits (59), Expect = 4.1
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 48 RKGKWLGRVGPQ------PSLPGGLRVGGLWGKARAGP 79
RKG GR GP P GG R GGL GK +GP
Sbjct: 312 RKG---GRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGP 346
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 27.3 bits (59), Expect = 4.1
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 58 PQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKARHMPLIWELGLTPSPSP 117
P P PGG GG G G G S G PS + G RH + E P+P+
Sbjct: 122 PLPGFPGGAGGGGGGGGGGPGRGPSPG-------PSGPANG--RHYGIKPETRAAPAPAT 172
Query: 118 A 118
A
Sbjct: 173 A 173
>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 27.3 bits (59), Expect = 4.1
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 54 GRVGPQPSLPGGLRVGG-LWGKARAGPGESL 83
G V PS PGG G +WG ARAG GE+L
Sbjct: 130 GGVSMGPS-PGGKDGGAFIWGGARAGGGEAL 159
>gi|239751736 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 27.3 bits (59), Expect = 4.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 47 WRKGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKA 100
WR G W R Q + PGG +AR GPG G ++ R S+ + KA
Sbjct: 15 WR-GSWRTR-SRQEARPGG------GSRARPGPGAGPGGEVLGRSSSTPASSKA 60
>gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo
sapiens]
Length = 201
Score = 27.3 bits (59), Expect = 4.1
Identities = 39/141 (27%), Positives = 49/141 (34%), Gaps = 15/141 (10%)
Query: 11 VEGMPRLAQESRVFSGSTPICCVILGPGRDPSG------LCYWRKGKWLGRVGPQPSLPG 64
V +P A E+ + P+ L R P G W +G GR G Q L
Sbjct: 63 VRVLPNTAAEAT--AKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGM-PGRGGHQRPLFS 119
Query: 65 GLRVG-----GLWGKARAGPGESLGSSLVN-RVPSSQSRGKARHMPLIWELGLTPSPSPA 118
L G G G R G SL SS P+ R +AR L W +PS
Sbjct: 120 TLGAGFQPPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSLGSG 179
Query: 119 HLEHMALAHLPCGWTLSSPGS 139
A C +SPG+
Sbjct: 180 WFRRRARRPRSCCGEAASPGA 200
>gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo
sapiens]
Length = 261
Score = 27.3 bits (59), Expect = 4.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 47 WRKGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNRVPSSQSRGKA 100
WR G W R Q + PGG +AR GPG G ++ R S+ + KA
Sbjct: 15 WR-GSWRTR-SRQEARPGG------GSRARPGPGAGPGGEVLGRSSSTPASSKA 60
>gi|238550198 synaptotagmin III [Homo sapiens]
Length = 590
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 49 KGKWLGRVGP---QPSLPGGLRVGGLWGKARAGPGESLG 84
K K +G++ P Q + PGG R GG G AG G G
Sbjct: 263 KAKLIGQIKPELYQGTGPGGRRSGGGPGSGEAGTGAPCG 301
>gi|238550196 synaptotagmin III [Homo sapiens]
Length = 590
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 49 KGKWLGRVGP---QPSLPGGLRVGGLWGKARAGPGESLG 84
K K +G++ P Q + PGG R GG G AG G G
Sbjct: 263 KAKLIGQIKPELYQGTGPGGRRSGGGPGSGEAGTGAPCG 301
>gi|14150054 synaptotagmin III [Homo sapiens]
Length = 590
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 49 KGKWLGRVGP---QPSLPGGLRVGGLWGKARAGPGESLG 84
K K +G++ P Q + PGG R GG G AG G G
Sbjct: 263 KAKLIGQIKPELYQGTGPGGRRSGGGPGSGEAGTGAPCG 301
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,496,942
Number of Sequences: 37866
Number of extensions: 436661
Number of successful extensions: 1287
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1276
Number of HSP's gapped (non-prelim): 74
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.