Guide to the Human Genome
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Name: ZBP1 Sequence: fasta or formatted (428aa) NCBI GI: 238550208
Description:

Z-DNA binding protein 1 isoform b

Referenced in:

Macrophages and Monocytes

Other entries for this name:
alt prot [429aa] Z-DNA binding protein 1 isoform a
alt prot [354aa] Z-DNA binding protein 1 isoform c
alt prot [248aa] Z-DNA binding protein 1 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         39           2
 C cysteine            0.9          4           1
 D aspartate           4.2         18           1
 E glutamate           7.2         31           2
 F phenylalanine       1.2          5           1
 G glycine            10.0         43           3
 H histidine           4.0         17           1
 I isoleucine          5.8         25           2
 K lysine              3.7         16           2
 L leucine             6.3         27           2
 M methionine          2.8         12           1
 N asparagine          3.0         13           1
 P proline             9.1         39           2
 Q glutamine           5.6         24           2
 R arginine            6.5         28           2
 S serine              9.1         39           2
 T threonine           4.7         20           1
 V valine              3.5         15           1
 W tryptophan          1.6          7           2
 Y tyrosine            1.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Z-DNA binding protein 1 isoform b 
ZBP1                  0.994   Z-DNA binding protein 1 isoform a 
ZBP1                  0.794   Z-DNA binding protein 1 isoform c 
ZBP1                  0.495   Z-DNA binding protein 1 isoform d 
COL4A6                0.015   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.015   type IV alpha 6 collagen isoform B precursor 
SMARCC2               0.015   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.015   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.015   SWI/SNF-related matrix-associated actin-dependent r...
LMTK3                 0.014   lemur tyrosine kinase 3 
KRBA1                 0.014   KRAB A domain containing 1 
LCP2                  0.014   lymphocyte cytosolic protein 2 
FIZ1                  0.013   FLT3-interacting zinc finger 1 
LOC100293922          0.013   PREDICTED: hypothetical protein 
LOC100292514          0.013   PREDICTED: hypothetical protein 
LOC100291358          0.013   PREDICTED: hypothetical protein XP_002347390 
LOC100290880          0.013   PREDICTED: hypothetical protein XP_002346484 
LOC100288000          0.013   PREDICTED: hypothetical protein XP_002342324 
VWA5B2                0.012   von Willebrand factor A domain containing 5B2 [Homo...
ZFHX2                 0.012   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.012   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.012   PREDICTED: zinc finger homeobox 2 
TNS4                  0.012   tensin 4 
COL1A2                0.012   alpha 2 type I collagen 
LOC100132999          0.012   PREDICTED: hypothetical protein 
COL5A2                0.012   alpha 2 type V collagen preproprotein 
LOC730256             0.012   PREDICTED: hypothetical protein 
LOC100292058          0.011   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.011   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.011   PREDICTED: hypothetical protein XP_002343287 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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