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Search of human proteins with 169209842
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169209842 PREDICTED: hypothetical protein [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169210206 PREDICTED: hypothetical protein [Homo sapiens] 264 1e-71
gi|169209842 PREDICTED: hypothetical protein [Homo sapiens] 264 1e-71
gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo sap... 34 0.029
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap... 34 0.029
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 32 0.14
gi|239741063 PREDICTED: hypothetical protein XP_002342081 [Homo ... 31 0.24
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 31 0.24
gi|239756303 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|239752706 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|239749721 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|239747242 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|239743976 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 31 0.32
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 31 0.32
gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens] 30 0.41
gi|226371708 exocyst complex component 3-like 2 [Homo sapiens] 30 0.54
gi|205360981 resistance to inhibitors of cholinesterase 3 homolo... 30 0.70
gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens] 29 0.92
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 29 0.92
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s... 29 0.92
gi|239757419 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239751936 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239743649 PREDICTED: IQ motif and ankyrin repeat domain-conta... 29 0.92
gi|238859651 pleckstrin homology domain containing family A memb... 29 1.2
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 29 1.2
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 29 1.2
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 29 1.2
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 29 1.2
>gi|169210206 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 264 bits (675), Expect = 1e-71
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MTQESIPMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLE 60
MTQESIPMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLE
Sbjct: 1 MTQESIPMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLE 60
Query: 61 GPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPAGKREEKRALLFSTQINMK 120
GPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPAGKREEKRALLFSTQINMK
Sbjct: 61 GPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPAGKREEKRALLFSTQINMK 120
Query: 121 QKSNITCRDSP 131
QKSNITCRDSP
Sbjct: 121 QKSNITCRDSP 131
>gi|169209842 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 264 bits (675), Expect = 1e-71
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MTQESIPMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLE 60
MTQESIPMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLE
Sbjct: 1 MTQESIPMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLE 60
Query: 61 GPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPAGKREEKRALLFSTQINMK 120
GPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPAGKREEKRALLFSTQINMK
Sbjct: 61 GPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPAGKREEKRALLFSTQINMK 120
Query: 121 QKSNITCRDSP 131
QKSNITCRDSP
Sbjct: 121 QKSNITCRDSP 131
>gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 451
Score = 34.3 bits (77), Expect = 0.029
Identities = 37/114 (32%), Positives = 48/114 (42%), Gaps = 22/114 (19%)
Query: 7 PMPRAGKRG-PHVRPRQSRQEFEQRLLRDLAAS-------ALHAG----EARQPPARAEA 54
P R G R P V PR +RQE QR + S A AG + RQPPAR
Sbjct: 107 PTQRCGPRAIPGVHPRPARQEEAQRRPAPRSGSHEQGAVQARAAGRQQLQHRQPPARGR- 165
Query: 55 QRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPAGKREEK 108
PV R A+ R RG+ R + + G +R G+ P +RE +
Sbjct: 166 -------PVRRRPAARVLRLRCRGSRARSLQQARGQQR--VAQGSGPVQRREAR 210
>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 487
Score = 34.3 bits (77), Expect = 0.029
Identities = 37/114 (32%), Positives = 48/114 (42%), Gaps = 22/114 (19%)
Query: 7 PMPRAGKRG-PHVRPRQSRQEFEQRLLRDLAAS-------ALHAG----EARQPPARAEA 54
P R G R P V PR +RQE QR + S A AG + RQPPAR
Sbjct: 107 PTQRCGPRAIPGVHPRPARQEEAQRRPAPRSGSHEQGAVQARAAGRQQLQHRQPPARGR- 165
Query: 55 QRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPAGKREEK 108
PV R A+ R RG+ R + + G +R G+ P +RE +
Sbjct: 166 -------PVRRRPAARVLRLRCRGSRARSLQQARGQQR--VAQGSGPVQRREAR 210
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 32.0 bits (71), Expect = 0.14
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 11 AGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLEGPVVREAPAQ 70
+G+RG + SR + E LL ASA+ +G + P A E R P R PA
Sbjct: 410 SGRRGSPRARKASRSQSETSLLG--RASAVPSGPPKYPTAEREEPR----PPRPRRGPAP 463
Query: 71 SQARRARGAFRR 82
+ A +A G+ RR
Sbjct: 464 TLAAQAAGSCRR 475
>gi|239741063 PREDICTED: hypothetical protein XP_002342081 [Homo
sapiens]
Length = 170
Score = 31.2 bits (69), Expect = 0.24
Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 7 PMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLEGPVVRE 66
P PR + SR E+ LL + S A A P + + +R GL P R
Sbjct: 44 PAPRPREMAAAAPQNGSRSVAEKHLLNPVTPSPCPAPLA--PTSFSPPRRPGLPTPP-RP 100
Query: 67 APAQSQARRARGAFRRCHR--------LSAGARRRGF---RHGACPAG 103
S AR+ RGAF R H LS G +G R+GA P G
Sbjct: 101 GATGSGARQQRGAFVRAHATFTQPHGPLSGGLFLKGATAGRNGAPPPG 148
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 31.2 bits (69), Expect = 0.24
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 1 MTQESIPMPRAGKRGP--HVR-PRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRL 57
M Q S+ P G RGP H++ P Q +LLR AL A Q + E Q L
Sbjct: 894 MDQASLWPPMYGGRGPASHMQHPGQLPVYSRPQLLRQQELYALQQQRAAQFQRKPEDQHL 953
Query: 58 GLEGPVVREAP 68
LE P +AP
Sbjct: 954 DLEEPAQEKAP 964
>gi|239756303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 232
Score = 30.8 bits (68), Expect = 0.32
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 3 QESIPMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLEGP 62
Q + P A + G R+ R+ LLR+ A + G R PA A + +G
Sbjct: 119 QAELRPPEAARTGGGCGERRRRKAAATLLLRNQNARRRNPGSRRAGPASRGA--MLEKGS 176
Query: 63 VVRE--APAQSQARRARGAFRRCHRLSAGARRRGFRH 97
RE PA ARGA+R R G R G H
Sbjct: 177 SSREDAPPAWEAEEPARGAWRVASRGETGLARSGDPH 213
>gi|239752706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 30.8 bits (68), Expect = 0.32
Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 7 PMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLEGPVVRE 66
P PR + SR E+ LL + S A A P + + +R GL P R
Sbjct: 44 PAPRPREMAAAAPQNGSRSVAEKHLLNAVTPSPCPAPLA--PTSFSPPRRPGLPTPP-RP 100
Query: 67 APAQSQARRARGAFRRCHR--------LSAGARRRGF---RHGACPAG 103
S AR+ RGAF R H LS G +G R+GA P G
Sbjct: 101 GATGSGARQQRGAFVRAHATFTQPHGPLSGGLFLKGATAGRNGAPPPG 148
>gi|239749721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 30.8 bits (68), Expect = 0.32
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 52 AEAQRLGLEGPVVREAPAQSQARRARGAFRRCHR-LSAGARRRGFRHGACPAGKREEKRA 110
AEA P +A +QS+ R R + RRC R L++ R F G+ P K ++A
Sbjct: 152 AEAASRDWAVPETTDAASQSRFRSCRASPRRCERCLTSDVSRLAFHGGSPPNPKAPGRQA 211
Query: 111 L 111
L
Sbjct: 212 L 212
>gi|239747242 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 30.8 bits (68), Expect = 0.32
Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 7 PMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQRLGLEGPVVRE 66
P PR + SR E+ LL + S A A P + + +R GL P R
Sbjct: 44 PAPRPREMAAAAPQNGSRSVAEKHLLNAVTPSPCPAPLA--PTSFSPPRRPGLPTPP-RP 100
Query: 67 APAQSQARRARGAFRRCHR--------LSAGARRRGF---RHGACPAG 103
S AR+ RGAF R H LS G +G R+GA P G
Sbjct: 101 GATGSGARQQRGAFVRAHATFTQPHGPLSGGLFLKGATAGRNGAPPPG 148
>gi|239743976 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 30.8 bits (68), Expect = 0.32
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 52 AEAQRLGLEGPVVREAPAQSQARRARGAFRRCHR-LSAGARRRGFRHGACPAGKREEKRA 110
AEA P +A +QS+ R R + RRC R L++ R F G+ P K ++A
Sbjct: 152 AEAASRDWAVPETTDAASQSRFRSCRASPRRCERCLTSDVSRLAFHGGSPPNPKAPGRQA 211
Query: 111 L 111
L
Sbjct: 212 L 212
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 30.8 bits (68), Expect = 0.32
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 36 AASALHAGEARQPPARAEAQRLGLEGPVVREAPAQSQARRARGAF-----RRCHRLSAGA 90
A+ A EA PP E R GL GP Q RARGA R+ R + +
Sbjct: 89 ASRAAPRPEASSPPLPLEKARGGLSGP---------QGGRARGAMAHVGSRKRSRSRSRS 139
Query: 91 RRRGFRHGACPAGKREEKRALLFSTQINMKQKSNITCRDS 130
R RG + K + ++Q KQK+ R S
Sbjct: 140 RGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSS 179
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 30.8 bits (68), Expect = 0.32
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 36 AASALHAGEARQPPARAEAQRLGLEGPVVREAPAQSQARRARGAF-----RRCHRLSAGA 90
A+ A EA PP E R GL GP Q RARGA R+ R + +
Sbjct: 89 ASRAAPRPEASSPPLPLEKARGGLSGP---------QGGRARGAMAHVGSRKRSRSRSRS 139
Query: 91 RRRGFRHGACPAGKREEKRALLFSTQINMKQKSNITCRDS 130
R RG + K + ++Q KQK+ R S
Sbjct: 140 RGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSS 179
>gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens]
Length = 485
Score = 30.4 bits (67), Expect = 0.41
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 49 PARAEAQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPAGKREEK 108
P R+ L + GP +AP +R RGA +C RL RRRG A +R
Sbjct: 369 PWRSPLLLLAMWGP---QAPPCLCRKRGRGACIKCERLRPRIRRRGLGPPAAAPARRRIP 425
Query: 109 RALLFSTQI 117
R T +
Sbjct: 426 RTPALCTPL 434
>gi|226371708 exocyst complex component 3-like 2 [Homo sapiens]
Length = 409
Score = 30.0 bits (66), Expect = 0.54
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 48 PPARAEAQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSA 88
PP RA A+RL GP E ++ A R CHR+ A
Sbjct: 132 PPLRALAERLARVGPPESEPAREASASALDHVTRLCHRVVA 172
>gi|205360981 resistance to inhibitors of cholinesterase 3 homolog
isoform a [Homo sapiens]
Length = 368
Score = 29.6 bits (65), Expect = 0.70
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 35 LAASALHAGEARQPPARAEAQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRG 94
L + L G+ ++PP E +LG P++ A S + F+R H A A+ +G
Sbjct: 23 LPKAFLSRGKRQEPPPTPEG-KLGRFPPMMHHHQAPSDGQTPGARFQRSHLAEAFAKAKG 81
Query: 95 FRHGACPAG 103
GA G
Sbjct: 82 SGGGAGGGG 90
>gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]
Length = 462
Score = 29.3 bits (64), Expect = 0.92
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 36 AASALHAGEARQPPARAEAQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGA 90
AA A G PPA E E+ A ++ RR RGA RR R AGA
Sbjct: 267 AAGAGENGHCAPPPADVEPD----------ESSAAAERRRRRGALRRGGRRRAGA 311
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 29.3 bits (64), Expect = 0.92
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 43 GEARQPPARAEAQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPA 102
GE R+ A G E R A + +R ARG G RRR RHGA PA
Sbjct: 953 GEHRRHRAHRRPGEEGPEDKAERRARHREGSRPARGGEGEGEGPDGGERRRRHRHGA-PA 1011
Query: 103 -----GKREEK 108
+RE+K
Sbjct: 1012 TYEGDARREDK 1022
>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
sapiens]
Length = 2261
Score = 29.3 bits (64), Expect = 0.92
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 43 GEARQPPARAEAQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRHGACPA 102
GE R+ A G E R A + +R ARG G RRR RHGA PA
Sbjct: 954 GEHRRHRAHRRPGEEGPEDKAERRARHREGSRPARGGEGEGEGPDGGERRRRHRHGA-PA 1012
Query: 103 -----GKREEK 108
+RE+K
Sbjct: 1013 TYEGDARREDK 1023
>gi|239757419 PREDICTED: hypothetical protein [Homo sapiens]
Length = 164
Score = 29.3 bits (64), Expect = 0.92
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 7 PMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAG 43
P P AGKRGP R + + LR A ++LH G
Sbjct: 39 PAPTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVG 75
>gi|239751936 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 29.3 bits (64), Expect = 0.92
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 7 PMPRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAG 43
P P AGKRGP R + + LR A ++LH G
Sbjct: 72 PAPTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVG 108
>gi|239743649 PREDICTED: IQ motif and ankyrin repeat
domain-containing protein LOC642574 [Homo sapiens]
Length = 580
Score = 29.3 bits (64), Expect = 0.92
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 16 PHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARAEAQ--------RLGLEGPVVREA 67
P +R R+ Q+ +R ++ A G R P +RA + RLG G
Sbjct: 27 PELRARRGSQDPRRRGAGEVPADL---GPLRVPGSRAASSCGLCGREPRLGRAGGF-ESR 82
Query: 68 PAQSQARRA-RGAFRRCHRLSAGARRRGFRHGACPAGKREEKRALL 112
PA+ +A RA +GAFR+ ARRR R + +K A L
Sbjct: 83 PAEDRAARAIQGAFRQLRARRELARRREERREYLEQMETPQKEAYL 128
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 6 IPMPRAGKRGPHVRPRQSRQEFEQRLLRD 34
+P P+ G + P RPR S QE +R+ R+
Sbjct: 573 LPSPQLGTKAPVARPRMSAQEQLERMRRN 601
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 28.9 bits (63), Expect = 1.2
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 41 HAGEARQPPARAE---AQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRH 97
HAG+A R + AQ +GL R Q+ A+ RGA R L AGA RG
Sbjct: 139 HAGDAHGLQLRGQGWAAQHVGLG----RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAE 194
Query: 98 GACP 101
P
Sbjct: 195 AQAP 198
>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 301
Score = 28.9 bits (63), Expect = 1.2
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 9 PRAGKRGPHVRPRQSRQEFEQRLLRDLAASALHAGEARQPPARA--EAQRLGLEGPVVRE 66
P + RGP RP LR + A A + PARA EA+R G
Sbjct: 35 PPSRARGPPGRPS----------LRSDSHPTQRARRAGEGPARARLEAERAGCAHGPGAP 84
Query: 67 APAQSQARRARGA----FRRCHRLSAGARRRGFRHGACPAG 103
A ++ A + RGA + R G + R G PAG
Sbjct: 85 ARTRAHAHKGRGAGKLVIQARTRAQKGGKGEETRRGPAPAG 125
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 28.9 bits (63), Expect = 1.2
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 41 HAGEARQPPARAE---AQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRH 97
HAG+A R + AQ +GL R Q+ A+ RGA R L AGA RG
Sbjct: 139 HAGDAHGLQLRGQGWAAQHVGLG----RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAE 194
Query: 98 GACP 101
P
Sbjct: 195 AQAP 198
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 28.9 bits (63), Expect = 1.2
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 41 HAGEARQPPARAE---AQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRGFRH 97
HAG+A R + AQ +GL R Q+ A+ RGA R L AGA RG
Sbjct: 139 HAGDAHGLQLRGQGWAAQHVGLG----RGGAGQALAQVERGAVGRAEDLQAGAGPRGAAE 194
Query: 98 GACP 101
P
Sbjct: 195 AQAP 198
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 28.9 bits (63), Expect = 1.2
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 36 AASALHAGEARQPPARAEAQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRGF 95
A+ A EA PP E R GL GP Q RARGA G+R+R
Sbjct: 89 ASRAAPRPEASSPPLPLEKARGGLSGP---------QGGRARGAMAH-----VGSRKRS- 133
Query: 96 RHGACPAGKREEKR 109
R + G+ EKR
Sbjct: 134 RSRSRSRGRGSEKR 147
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 28.9 bits (63), Expect = 1.2
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 36 AASALHAGEARQPPARAEAQRLGLEGPVVREAPAQSQARRARGAFRRCHRLSAGARRRGF 95
A+ A EA PP E R GL GP Q RARGA G+R+R
Sbjct: 89 ASRAAPRPEASSPPLPLEKARGGLSGP---------QGGRARGAMAH-----VGSRKRS- 133
Query: 96 RHGACPAGKREEKR 109
R + G+ EKR
Sbjct: 134 RSRSRSRGRGSEKR 147
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,188,855
Number of Sequences: 37866
Number of extensions: 221292
Number of successful extensions: 909
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 76
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.