Guide to the Human Genome
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Name: LOC100131892 Sequence: fasta or formatted (131aa) NCBI GI: 169210206
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {131aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         19           2
 C cysteine            2.3          3           1
 D aspartate           1.5          2           1
 E glutamate           6.9          9           2
 F phenylalanine       3.1          4           1
 G glycine             7.6         10           1
 H histidine           3.1          4           1
 I isoleucine          2.3          3           1
 K lysine              3.8          5           1
 L leucine             6.9          9           2
 M methionine          2.3          3           1
 N asparagine          1.5          2           1
 P proline             7.6         10           2
 Q glutamine           7.6         10           1
 R arginine           18.3         24           3
 S serine              6.1          8           1
 T threonine           2.3          3           1
 V valine              2.3          3           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131892          1.000   PREDICTED: hypothetical protein 
TMEM88B               0.038   PREDICTED: hypothetical protein LOC643965 
TMEM88B               0.038   PREDICTED: hypothetical protein LOC643965 
DACT3                 0.029   thymus expressed gene 3-like 
LOC100288612          0.025   PREDICTED: hypothetical protein XP_002342081 
BAHCC1                0.025   BAH domain and coiled-coil containing 1 
LOC100292993          0.025   PREDICTED: hypothetical protein 
LOC100292453          0.025   PREDICTED: hypothetical protein 
LOC100130837          0.025   PREDICTED: hypothetical protein 
LOC100288612          0.025   PREDICTED: hypothetical protein 
LOC100130837          0.025   PREDICTED: hypothetical protein 
ARL6IP4               0.025   SRp25 nuclear protein isoform 4 
ARL6IP4               0.025   SRp25 nuclear protein isoform 2 
ZDHHC1                0.021   zinc finger, DHHC-type containing 1 
EXOC3L2               0.021   exocyst complex component 3-like 2 
RIC3                  0.021   resistance to inhibitors of cholinesterase 3 homolo...
ADRA2C                0.017   alpha-2C-adrenergic receptor 
CACNA1A               0.017   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.017   calcium channel, alpha 1A subunit isoform 3 
LOC388780             0.017   PREDICTED: hypothetical protein 
LOC388780             0.017   PREDICTED: hypothetical protein 
LOC642574             0.017   PREDICTED: IQ motif and ankyrin repeat domain-conta...
PLEKHA4               0.017   pleckstrin homology domain containing family A memb...
LOC100293327          0.017   PREDICTED: hypothetical protein 
LOC730183             0.017   PREDICTED: hypothetical protein 
LOC100291252          0.017   PREDICTED: hypothetical protein XP_002347634 
LOC100287254          0.017   PREDICTED: hypothetical protein XP_002343484 
ARL6IP4               0.017   SRp25 nuclear protein isoform 3 
ARL6IP4               0.017   SRp25 nuclear protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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