Guide to the Human Genome
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Name: LOC644231 Sequence: fasta or formatted (130aa) NCBI GI: 169208753
Description:

PREDICTED: similar to WHDC1-like protein 1

Not currently referenced in the text

Other entries for this name:
alt prot {131aa} PREDICTED: similar to WAS protein homolog associated with actin, ...
alt mRNA {130aa} PREDICTED: similar to WAS protein homolog associated with actin, ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          8           2
 C cysteine            0.0          0           0
 D aspartate           3.8          5           1
 E glutamate          14.6         19           2
 F phenylalanine       2.3          3           1
 G glycine             2.3          3           1
 H histidine           0.0          0           0
 I isoleucine          6.2          8           1
 K lysine             11.5         15           2
 L leucine            15.4         20           2
 M methionine          5.4          7           1
 N asparagine          3.1          4           1
 P proline             3.1          4           1
 Q glutamine           9.2         12           1
 R arginine            4.6          6           1
 S serine              1.5          2           1
 T threonine           3.1          4           2
 V valine              3.8          5           2
 W tryptophan          0.8          1           1
 Y tyrosine            3.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to WHDC1-like protein 1 
LOC644231             1.000   PREDICTED: similar to WAS protein homolog associate...
LOC642397             0.991   PREDICTED: similar to WAS protein homolog associate...
LOC644231             0.841   PREDICTED: similar to WAS protein homolog associate...
WHAMM                 0.793   WAS protein homolog associated with actin, golgi me...
JMY                   0.379   junction-mediating and regulatory protein 
AKAP9                 0.053   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.053   A-kinase anchor protein 9 isoform 3 
ZNF365                0.040   zinc finger protein 365 isoform C 
ZNF365                0.040   zinc finger protein 365 isoform B 
ZNF365                0.040   zinc finger protein 365 isoform A 
DYDC1                 0.035   DPY30 domain containing 1 
CTTNBP2NL             0.031   CTTNBP2 N-terminal like 
GOLGA6                0.031   golgi autoantigen, golgin subfamily a, 6 
SDCCAG8               0.031   serologically defined colon cancer antigen 8 
GCC2                  0.031   GRIP and coiled-coil domain-containing 2 
MNS1                  0.031   meiosis-specific nuclear structural 1 
GOLGA6B               0.031   golgi autoantigen, golgin subfamily a, 6B 
GOLGA6D               0.026   golgi autoantigen, golgin subfamily a, 6D 
ANKRD18A              0.026   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.026   PREDICTED: ankyrin repeat domain 18A 
GOLGA6C               0.026   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
ANKRD18A              0.026   PREDICTED: ankyrin repeat domain 18A 
USP1                  0.026   ubiquitin specific protease 1 
USP1                  0.026   ubiquitin specific protease 1 
USP1                  0.026   ubiquitin specific protease 1 
EBNA1BP2              0.026   EBNA1 binding protein 2 isoform 2 
EBNA1BP2              0.026   EBNA1 binding protein 2 isoform 1 
KIAA1026              0.026   kazrin isoform E 
KIAA1026              0.026   kazrin isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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