Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC644231 Sequence: fasta or formatted (131aa) NCBI GI: 169208040
Description:

PREDICTED: similar to WAS protein homolog associated with actin, golgi membranes and microtubules isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {130aa} PREDICTED: similar to WHDC1-like protein 1
alt prot {130aa} PREDICTED: similar to WAS protein homolog associated with actin, ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          7           2
 C cysteine            0.8          1           1
 D aspartate           4.6          6           1
 E glutamate          16.8         22           2
 F phenylalanine       2.3          3           1
 G glycine             1.5          2           1
 H histidine           0.8          1           1
 I isoleucine          5.3          7           1
 K lysine              9.9         13           1
 L leucine            14.5         19           2
 M methionine          4.6          6           1
 N asparagine          3.1          4           1
 P proline             3.1          4           1
 Q glutamine           8.4         11           1
 R arginine            4.6          6           1
 S serine              2.3          3           1
 T threonine           3.1          4           2
 V valine              4.6          6           2
 W tryptophan          0.8          1           1
 Y tyrosine            3.8          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to WAS protein homolog associate... 
WHAMM                 0.918   WAS protein homolog associated with actin, golgi me...
LOC644231             0.820   PREDICTED: similar to WHDC1-like protein 1 
LOC644231             0.820   PREDICTED: similar to WAS protein homolog associate...
LOC642397             0.815   PREDICTED: similar to WAS protein homolog associate...
JMY                   0.459   junction-mediating and regulatory protein 
ZNF365                0.039   zinc finger protein 365 isoform C 
ZNF365                0.039   zinc finger protein 365 isoform B 
ZNF365                0.039   zinc finger protein 365 isoform A 
GCC2                  0.034   GRIP and coiled-coil domain-containing 2 
DCTN1                 0.030   dynactin 1 isoform 4 
DCTN1                 0.030   dynactin 1 isoform 3 
DCTN1                 0.030   dynactin 1 isoform 2 
DCTN1                 0.030   dynactin 1 isoform 1 
SMC1A                 0.030   structural maintenance of chromosomes 1A 
PHLDB2                0.030   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.030   pleckstrin homology-like domain, family B, member 2 ...
MYH8                  0.030   myosin, heavy chain 8, skeletal muscle, perinatal [...
SDCCAG8               0.030   serologically defined colon cancer antigen 8 
MYH3                  0.030   myosin, heavy chain 3, skeletal muscle, embryonic [H...
TAOK3                 0.030   TAO kinase 3 
USP1                  0.026   ubiquitin specific protease 1 
USP1                  0.026   ubiquitin specific protease 1 
USP1                  0.026   ubiquitin specific protease 1 
GOLGA6                0.026   golgi autoantigen, golgin subfamily a, 6 
TCHH                  0.026   trichohyalin 
KIAA1026              0.026   kazrin isoform E 
KIAA1026              0.026   kazrin isoform C 
KIAA1026              0.026   kazrin isoform B 
KIAA1026              0.026   kazrin isoform C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press