Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SSH3 Sequence: fasta or formatted (659aa) NCBI GI: 239582767
Description:

slingshot homolog 3

Referenced in:

Dual-Specificity Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         50           2
 C cysteine            0.9          6           1
 D aspartate           3.9         26           2
 E glutamate           9.6         63           3
 F phenylalanine       2.4         16           1
 G glycine             7.4         49           3
 H histidine           2.7         18           1
 I isoleucine          2.6         17           1
 K lysine              2.1         14           1
 L leucine            10.5         69           3
 M methionine          1.8         12           1
 N asparagine          2.0         13           1
 P proline             7.3         48           2
 Q glutamine           8.8         58           2
 R arginine            7.3         48           2
 S serine              9.4         62           3
 T threonine           4.1         27           1
 V valine              6.5         43           2
 W tryptophan          1.5         10           1
 Y tyrosine            1.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   slingshot homolog 3 
SSH1                  0.321   slingshot 1 isoform 1 
SSH1                  0.321   slingshot 1 isoform 2 
SSH1                  0.311   slingshot 1 isoform 3 
SSH2                  0.307   slingshot 2 
DUSP19                0.060   dual specificity phosphatase 19 isoform 1 
DUSP8                 0.056   dual specificity phosphatase 8 
DUSP16                0.055   dual specificity phosphatase 16 
DUSP22                0.050   dual specificity phosphatase 22 
DUSP15                0.050   dual specificity phosphatase 15 isoform a 
DUSP10                0.050   dual specificity phosphatase 10 isoform a 
DUSP5                 0.049   dual specificity phosphatase 5 
DUSP9                 0.049   dual specificity phosphatase 9 
DUSP28                0.048   dual specificity phosphatase 28 
DUSP26                0.046   dual specificity phosphatase 26 
DUSP4                 0.045   dual specificity phosphatase 4 isoform 1 
DUSP4                 0.045   dual specificity phosphatase 4 isoform 2 
DUSP1                 0.044   dual specificity phosphatase 1 
DUSP2                 0.044   dual specificity phosphatase 2 
DUSP7                 0.042   dual specificity phosphatase 7 
LOC100290651          0.042   PREDICTED: hypothetical protein XP_002347464 
STYX                  0.042   serine/threonine/tyrosine interacting protein [Homo...
STYX                  0.042   serine/threonine/tyrosine interacting protein 
DUSP18                0.041   dual specificity phosphatase 18 
DUSP14                0.039   dual specificity phosphatase 14 
DUSP12                0.038   dual specificity phosphatase 12 
DUSP13                0.038   testis and skeletal muscle-specific dual specificity...
DUSP10                0.038   dual specificity phosphatase 10 isoform b 
DUSP10                0.038   dual specificity phosphatase 10 isoform b 
DUSP13                0.038   muscle-restricted dual specificity phosphatase isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press