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Search of human proteins with 169206303
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169206303 PREDICTED: hypothetical protein [Homo sapiens]
(206 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206303 PREDICTED: hypothetical protein [Homo sapiens] 411 e-115
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 344 3e-95
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 344 3e-95
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 33 0.22
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 33 0.22
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 33 0.22
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens] 32 0.50
gi|52426761 gamma-aminobutyric acid (GABA) A receptor, epsilon p... 30 1.1
gi|53829385 leucine rich repeat containing 37B [Homo sapiens] 30 1.9
gi|190684675 X-ray repair cross complementing protein 1 [Homo sa... 29 2.5
gi|239746344 PREDICTED: hypothetical protein XP_002343734 [Homo ... 29 3.2
gi|30581164 neuropeptides B/W receptor 2 [Homo sapiens] 29 3.2
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 28 4.2
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens] 28 4.2
gi|157785645 SPEG complex locus [Homo sapiens] 28 4.2
gi|38570149 WWC family member 3 [Homo sapiens] 28 7.2
gi|21040353 hemochromatosis protein isoform 9 precursor [Homo sa... 27 9.4
gi|4885245 FOS-like antigen 2 [Homo sapiens] 27 9.4
gi|23200025 tumor necrosis factor receptor superfamily, member 2... 27 9.4
gi|23200021 tumor necrosis factor receptor superfamily, member 2... 27 9.4
gi|4507569 tumor necrosis factor receptor superfamily, member 25... 27 9.4
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 27 9.4
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 27 9.4
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 27 9.4
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 27 9.4
>gi|169206303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 206
Score = 411 bits (1056), Expect = e-115
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MKKKLSEWPQRRMFMSCSVTDGCSQLSFTKPMVGERAVPALLLLLVLGGHGEVLVLGVEG 60
MKKKLSEWPQRRMFMSCSVTDGCSQLSFTKPMVGERAVPALLLLLVLGGHGEVLVLGVEG
Sbjct: 1 MKKKLSEWPQRRMFMSCSVTDGCSQLSFTKPMVGERAVPALLLLLVLGGHGEVLVLGVEG 60
Query: 61 DQVLVLGVGALVDVQAAVESDHPFRRACLAPPLFLALVVLEPRRLRRRPPARRRLVAARA 120
DQVLVLGVGALVDVQAAVESDHPFRRACLAPPLFLALVVLEPRRLRRRPPARRRLVAARA
Sbjct: 61 DQVLVLGVGALVDVQAAVESDHPFRRACLAPPLFLALVVLEPRRLRRRPPARRRLVAARA 120
Query: 121 GSAQHEEALVAMLLLAQASLSWTVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSW 180
GSAQHEEALVAMLLLAQASLSWTVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSW
Sbjct: 121 GSAQHEEALVAMLLLAQASLSWTVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSW 180
Query: 181 TPLDQVCKSCESPGGASDTVHRSSLA 206
TPLDQVCKSCESPGGASDTVHRSSLA
Sbjct: 181 TPLDQVCKSCESPGGASDTVHRSSLA 206
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 344 bits (882), Expect = 3e-95
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 33 VGERAVPALLLLLVLGGHGEVLVLGVEGDQVLVLGVGALVDVQAAVESDHPFRRACLAPP 92
VGERAVPALLLLLVLGGHGEVLVLGVEGDQVLVLGVGALVDVQAAVESDHPFRRACLAPP
Sbjct: 1124 VGERAVPALLLLLVLGGHGEVLVLGVEGDQVLVLGVGALVDVQAAVESDHPFRRACLAPP 1183
Query: 93 LFLALVVLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLSKRNP 152
LFLALVVLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLSKRNP
Sbjct: 1184 LFLALVVLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLSKRNP 1243
Query: 153 TCQASRQTVVQPPQPGLQIVTPAPALSWTPLDQVCKSCESPGGASDTVHRSSLA 206
TCQASRQTVVQPPQPGLQIVTPAPALSWTPLDQVCKSCESPGGASDTVHRSSLA
Sbjct: 1244 TCQASRQTVVQPPQPGLQIVTPAPALSWTPLDQVCKSCESPGGASDTVHRSSLA 1297
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 344 bits (882), Expect = 3e-95
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 33 VGERAVPALLLLLVLGGHGEVLVLGVEGDQVLVLGVGALVDVQAAVESDHPFRRACLAPP 92
VGERAVPALLLLLVLGGHGEVLVLGVEGDQVLVLGVGALVDVQAAVESDHPFRRACLAPP
Sbjct: 1124 VGERAVPALLLLLVLGGHGEVLVLGVEGDQVLVLGVGALVDVQAAVESDHPFRRACLAPP 1183
Query: 93 LFLALVVLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLSKRNP 152
LFLALVVLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLSKRNP
Sbjct: 1184 LFLALVVLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLSKRNP 1243
Query: 153 TCQASRQTVVQPPQPGLQIVTPAPALSWTPLDQVCKSCESPGGASDTVHRSSLA 206
TCQASRQTVVQPPQPGLQIVTPAPALSWTPLDQVCKSCESPGGASDTVHRSSLA
Sbjct: 1244 TCQASRQTVVQPPQPGLQIVTPAPALSWTPLDQVCKSCESPGGASDTVHRSSLA 1297
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.22
Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 83 PFRRACLAPPLFLALVVLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSW 142
P R APP P LR P RRL + A A A VA+ +L A L
Sbjct: 165 PGPRKARAPP--------PPPPLRLGRPLSRRL--SLASPAWVFNAAVALAVLVAAGLVV 214
Query: 143 TVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSWTP 182
+ ++ P +S PP+P L + PAP SW P
Sbjct: 215 SGVYIFFLIPHATSSG-----PPRPQLVALAPAPGFSWFP 249
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.22
Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 83 PFRRACLAPPLFLALVVLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSW 142
P R APP P LR P RRL + A A A VA+ +L A L
Sbjct: 165 PGPRKARAPP--------PPPPLRLGRPLSRRL--SLASPAWVFNAAVALAVLVAAGLVV 214
Query: 143 TVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSWTP 182
+ ++ P +S PP+P L + PAP SW P
Sbjct: 215 SGVYIFFLIPHATSSG-----PPRPQLVALAPAPGFSWFP 249
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.22
Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 83 PFRRACLAPPLFLALVVLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSW 142
P R APP P LR P RRL + A A A VA+ +L A L
Sbjct: 165 PGPRKARAPP--------PPPPLRLGRPLSRRL--SLASPAWVFNAAVALAVLVAAGLVV 214
Query: 143 TVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSWTP 182
+ ++ P +S PP+P L + PAP SW P
Sbjct: 215 SGVYIFFLIPHATSSG-----PPRPQLVALAPAPGFSWFP 249
>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
Length = 621
Score = 31.6 bits (70), Expect = 0.50
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 149 KRNPTCQASRQTVVQPPQPGLQIVTPAPALSWTPLDQVCKSCESPGGASDTVHRSSLA 206
K N CQA+ +TV P P Q +P P + P S E P + V S+L+
Sbjct: 291 KDNQECQATVETVELDPAPPSQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLS 348
>gi|52426761 gamma-aminobutyric acid (GABA) A receptor, epsilon
precursor [Homo sapiens]
Length = 506
Score = 30.4 bits (67), Expect = 1.1
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 104 RLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLSKRNPTCQASRQTVVQ 163
R+ R AR R +RA + QH+EA V ++ + S + P+C A Q
Sbjct: 381 RINSRAHARTR-ARSRACARQHQEAFVCQIVTTEGS-------DGEERPSCSAQ-----Q 427
Query: 164 PPQPG 168
PP PG
Sbjct: 428 PPSPG 432
>gi|53829385 leucine rich repeat containing 37B [Homo sapiens]
Length = 947
Score = 29.6 bits (65), Expect = 1.9
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 121 GSAQHEEALVAMLLLAQASLSWTVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSW 180
G AQH A + LS T ++ P+ + +T QPP PGL I TP P
Sbjct: 404 GQAQHSHLTEATVQPLDLELSITTEPTTEVKPS-PTTEETSAQPPDPGLAI-TPEPTTEI 461
Query: 181 TPLDQVCKSCESPGGASDTVHRS 203
+ K+ T+HRS
Sbjct: 462 GHSTALEKTRAPHPDQVQTLHRS 484
>gi|190684675 X-ray repair cross complementing protein 1 [Homo
sapiens]
Length = 633
Score = 29.3 bits (64), Expect = 2.5
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 99 VLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLSKRNPTCQASR 158
VL+ R+RRR P++R L+A S++ +EA + +A +K PT A
Sbjct: 386 VLDCHRMRRRLPSQRYLMAGPGSSSEEDEASHSGGSGDEAPKLPQKQPQTKTKPTQAAGP 445
Query: 159 QTVVQPPQP 167
+ +PP P
Sbjct: 446 SSPQKPPTP 454
>gi|239746344 PREDICTED: hypothetical protein XP_002343734 [Homo
sapiens]
Length = 194
Score = 28.9 bits (63), Expect = 3.2
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 106 RRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLSKRNPTCQAS 157
RR P RRRL A+ +EALVA QA+ S H ++R T QA+
Sbjct: 60 RRAPRLRRRLSFE---VAREQEALVAQAQPLQAAYSLIFFHPARRGLTLQAA 108
>gi|30581164 neuropeptides B/W receptor 2 [Homo sapiens]
Length = 333
Score = 28.9 bits (63), Expect = 3.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 97 LVVLEPRRLRRRPPARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLS 148
+ VL LRR R R A G A+ + ++ +++LA L WT HL+
Sbjct: 228 ICVLYTDLLRRLRAVRLRSGAKALGKARRKVTVLVLVVLAVCLLCWTPFHLA 279
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 28.5 bits (62), Expect = 4.2
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 110 PARRRLVAARAGSAQHEEALVAMLLLAQASLSWTVCHLSKRNPTCQASRQTVVQPPQ-PG 168
PAR L ++ A +A V L A+ V K N TC+ + +PP P
Sbjct: 76 PARPGL--SQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPR 133
Query: 169 LQIVTPAPALSWTPLDQVCKSCESP 193
+ + PA LS ++C+SCE P
Sbjct: 134 MDLQQPAANLS-----ELCRSCEHP 153
>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 1910
Score = 28.5 bits (62), Expect = 4.2
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 122 SAQHEEALVAMLLLAQASLSWTVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSWT 181
S+ EE+ + L + +AS S LSK PT V PP P L TP + T
Sbjct: 1594 SSLGEESFLPALSMPRASRS-----LSKPEPT-------YVSPPCPRLSHSTPGKSRGQT 1641
Query: 182 PLDQVCKSCESPGGASDT 199
+C++C G S T
Sbjct: 1642 ---YICQACTPTHGPSST 1656
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 28.5 bits (62), Expect = 4.2
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 86 RACLAPPLFLALVVLEPRRLRRRPPARRRLV-AARAGSAQHEE----ALVAMLLLAQASL 140
RA P L L + +RLRR PPA+R AR G + E A + +L + L
Sbjct: 2398 RAVGEPGLVRRLSLSLSQRLRRTPPAQRHPAWEARGGDGESSEGGSSARGSPVLAMRRRL 2457
Query: 141 SWTVCHLSKR 150
S+T+ LS R
Sbjct: 2458 SFTLERLSSR 2467
>gi|38570149 WWC family member 3 [Homo sapiens]
Length = 1092
Score = 27.7 bits (60), Expect = 7.2
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 156 ASRQTVVQPPQPGLQIVTP-APALSWTPLDQVCKSCESPG-GASDTV--HRSSL 205
+SR ++ P + TP PA +PL Q+ SCE PG GA D + H S++
Sbjct: 453 SSRSSLSSLSPPSSPLDTPFLPASRDSPLAQLADSCEGPGLGALDRLRAHASAM 506
>gi|21040353 hemochromatosis protein isoform 9 precursor [Homo
sapiens]
Length = 325
Score = 27.3 bits (59), Expect = 9.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 33 VGERAVPALLLLLVLGG---HGEVLVLGVEGDQVLV 65
+G RA PALLLL++L G +L LG DQ+ V
Sbjct: 1 MGPRARPALLLLMLLQTAVLQGRLLPLGYVDDQLFV 36
>gi|4885245 FOS-like antigen 2 [Homo sapiens]
Length = 326
Score = 27.3 bits (59), Expect = 9.4
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 25/116 (21%)
Query: 101 EPRRLRRRPPARRRLVAARAGSAQHE-----EALVAMLLLAQASLSWTVCHLSKRN---- 151
E RR+RR R +L AA+ + + E +A L ++ L + L K
Sbjct: 125 EKRRIRRE---RNKLAAAKCRNRRRELTEKLQAETEELEEEKSGLQKEIAELQKEKEKLE 181
Query: 152 -------PTCQASRQTVVQPPQPGLQIV------TPAPALSWTPLDQVCKSCESPG 194
P C+ S + PP PGLQ + A + PL++ S S G
Sbjct: 182 FMLVAHGPVCKISPEERRSPPAPGLQPMRSGGGSVGAVVVKQEPLEEDSPSSSSAG 237
>gi|23200025 tumor necrosis factor receptor superfamily, member 25
isoform 4 precursor [Homo sapiens]
Length = 372
Score = 27.3 bits (59), Expect = 9.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 129 LVAMLLLAQASLSWTVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSWTPLD 184
LV LLL A+L++T H P +V + G++ +TP PA +PLD
Sbjct: 165 LVVPLLLG-ATLTYTYRHCWPHKP--------LVTADEAGMEALTPPPATHLSPLD 211
>gi|23200021 tumor necrosis factor receptor superfamily, member 25
isoform 1 precursor [Homo sapiens]
Length = 426
Score = 27.3 bits (59), Expect = 9.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 129 LVAMLLLAQASLSWTVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSWTPLD 184
LV LLL A+L++T H P +V + G++ +TP PA +PLD
Sbjct: 219 LVVPLLLG-ATLTYTYRHCWPHKP--------LVTADEAGMEALTPPPATHLSPLD 265
>gi|4507569 tumor necrosis factor receptor superfamily, member 25
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 27.3 bits (59), Expect = 9.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 129 LVAMLLLAQASLSWTVCHLSKRNPTCQASRQTVVQPPQPGLQIVTPAPALSWTPLD 184
LV LLL A+L++T H P +V + G++ +TP PA +PLD
Sbjct: 210 LVVPLLLG-ATLTYTYRHCWPHKP--------LVTADEAGMEALTPPPATHLSPLD 256
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 27.3 bits (59), Expect = 9.4
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 34 GERAVPALLLLLVLGGHGEVLVLGVE 59
G RAV AL LLL +G L+LGV+
Sbjct: 32 GSRAVSALCLLLSVGSAAACLLLGVQ 57
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo
sapiens]
Length = 2191
Score = 27.3 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 146 HLSKRNP--TCQASRQTVVQPPQPGLQIVTPAP 176
H+S+R P + AS Q + +PPQP Q P
Sbjct: 1457 HVSQRQPYMSSSASMQPITRPPQPSYQTPPSLP 1489
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 27.3 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 146 HLSKRNP--TCQASRQTVVQPPQPGLQIVTPAP 176
H+S+R P + AS Q + +PPQP Q P
Sbjct: 1497 HVSQRQPYMSSSASMQPITRPPQPSYQTPPSLP 1529
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo
sapiens]
Length = 2178
Score = 27.3 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 146 HLSKRNP--TCQASRQTVVQPPQPGLQIVTPAP 176
H+S+R P + AS Q + +PPQP Q P
Sbjct: 1444 HVSQRQPYMSSSASMQPITRPPQPSYQTPPSLP 1476
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,921,939
Number of Sequences: 37866
Number of extensions: 393661
Number of successful extensions: 1182
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 26
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.