Guide to the Human Genome
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Name: LOC100129303 Sequence: fasta or formatted (278aa) NCBI GI: 169206177
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {278aa} PREDICTED: hypothetical protein
alt mRNA {278aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         22           2
 C cysteine            0.7          2           1
 D aspartate           6.1         17           2
 E glutamate           7.2         20           2
 F phenylalanine       2.2          6           1
 G glycine            10.1         28           2
 H histidine           4.3         12           2
 I isoleucine          1.4          4           1
 K lysine              2.2          6           1
 L leucine            12.9         36           3
 M methionine          0.7          2           1
 N asparagine          2.2          6           1
 P proline             7.6         21           4
 Q glutamine           7.2         20           1
 R arginine            7.2         20           2
 S serine              2.9          8           2
 T threonine           1.8          5           1
 V valine             11.9         33           3
 W tryptophan          1.4          4           1
 Y tyrosine            2.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129303          1.000   PREDICTED: hypothetical protein 
LOC100129303          1.000   PREDICTED: hypothetical protein 
FAM22A                0.018   hypothetical protein LOC728118 
FAM22E                0.017   PREDICTED: hypothetical protein isoform 1 
FAM22E                0.017   PREDICTED: hypothetical protein 
FAM22B                0.017   PREDICTED: hypothetical protein isoform 1 
FAM22D                0.015   hypothetical protein LOC728130 
BMP8B                 0.013   bone morphogenetic protein 8B preproprotein 
BMP8A                 0.013   bone morphogenetic protein 8A 
IER2                  0.013   immediate early response 2 
LFNG                  0.011   lunatic fringe isoform b 
LFNG                  0.011   lunatic fringe isoform a 
WNK4                  0.009   WNK lysine deficient protein kinase 4 
GRSF1                 0.009   G-rich RNA sequence binding factor 1 isoform 1 [Hom...
LMO2                  0.009   LIM domain only 2 isoform 1 
SRPK2                 0.009   serine/arginine-rich protein-specific kinase 2 isofo...
SRPK2                 0.009   serine/arginine-rich protein-specific kinase 2 isofo...
GLIS3                 0.009   GLIS family zinc finger 3 isoform a 
GLIS3                 0.009   GLIS family zinc finger 3 isoform b 
CADPS                 0.009   Ca2+-dependent secretion activator isoform 2 
DAAM1                 0.009   dishevelled-associated activator of morphogenesis 1 ...
PPP1R15A              0.007   protein phosphatase 1, regulatory subunit 15A [Homo...
SPRY1                 0.007   sprouty homolog 1, antagonist of FGF signaling [Homo...
SPRY1                 0.007   sprouty homolog 1, antagonist of FGF signaling [Homo...
FAM22G                0.007   hypothetical protein LOC441457 
FAM22F                0.007   hypothetical protein LOC54754 
HDAC5                 0.007   histone deacetylase 5 isoform 3 
HDAC5                 0.007   histone deacetylase 5 isoform 1 
HES6                  0.007   hairy and enhancer of split 6 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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