Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GRSF1 Sequence: fasta or formatted (480aa) NCBI GI: 149193321
Description:

G-rich RNA sequence binding factor 1 isoform 1

Referenced in:

hnRNP

Other entries for this name:
alt prot [318aa] G-rich RNA sequence binding factor 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         51           7
 C cysteine            1.9          9           1
 D aspartate           4.4         21           2
 E glutamate           9.0         43           3
 F phenylalanine       4.2         20           2
 G glycine             6.7         32           1
 H histidine           2.5         12           2
 I isoleucine          4.2         20           2
 K lysine              4.6         22           2
 L leucine             8.5         41           5
 M methionine          2.7         13           1
 N asparagine          3.5         17           2
 P proline             6.2         30           4
 Q glutamine           2.9         14           1
 R arginine            6.9         33           3
 S serine              6.9         33           3
 T threonine           4.2         20           2
 V valine              6.5         31           2
 W tryptophan          0.4          2           1
 Y tyrosine            3.3         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G-rich RNA sequence binding factor 1 isoform 1 [Hom... 
GRSF1                 0.659   G-rich RNA sequence binding factor 1 isoform 2 [Hom...
HNRNPF                0.257   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.257   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.257   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.257   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.257   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.257   heterogeneous nuclear ribonucleoprotein F 
HNRNPH1               0.188   heterogeneous nuclear ribonucleoprotein H1 
HNRNPH2               0.188   heterogeneous nuclear ribonucleoprotein H2 
HNRNPH2               0.188   heterogeneous nuclear ribonucleoprotein H2 
ESRP1                 0.118   RNA binding motif protein 35A isoform 5 
ESRP1                 0.118   RNA binding motif protein 35A isoform 3 
ESRP1                 0.118   RNA binding motif protein 35A isoform 4 
ESRP1                 0.118   RNA binding motif protein 35A isoform 2 
ESRP1                 0.118   RNA binding motif protein 35A isoform 1 
ESRP2                 0.117   RNA binding motif protein 35B 
HNRNPH3               0.096   heterogeneous nuclear ribonucleoprotein H3 isoform a...
HNRNPH3               0.096   heterogeneous nuclear ribonucleoprotein H3 isoform b...
RBM12                 0.075   RNA binding motif protein 12 
RBM12                 0.075   RNA binding motif protein 12 
RBM12B                0.068   RNA binding motif protein 12B 
RBM19                 0.043   RNA binding motif protein 19 
RBM19                 0.043   RNA binding motif protein 19 
RBM19                 0.043   RNA binding motif protein 19 
HNRNPD                0.027   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.027   heterogeneous nuclear ribonucleoprotein D isoform d ...
HNRNPD                0.026   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.026   heterogeneous nuclear ribonucleoprotein D isoform c ...
EWSR1                 0.023   Ewing sarcoma breakpoint region 1 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press