Guide to the Human Genome
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Search of human proteins with 169206175

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169206175 PREDICTED: similar to hCG28707 [Homo sapiens]
         (386 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169206175 PREDICTED: similar to hCG28707 [Homo sapiens]            783   0.0  
gi|169206491 PREDICTED: similar to hCG28707 [Homo sapiens]            783   0.0  
gi|113424170 PREDICTED: similar to hCG28707 [Homo sapiens]            758   0.0  
gi|39725952 angiogenic factor VG5Q [Homo sapiens]                      36   0.051
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        33   0.43 
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora...    33   0.57 
gi|7662184 zinc finger homeobox 1b [Homo sapiens]                      31   2.2  
gi|32528295 ribosomal protein S6 kinase, polypeptide 5 isoform a...    31   2.2  
gi|221219004 WD repeat domain 74 [Homo sapiens]                        31   2.2  
gi|9910418 mouse Mdm1 nuclear protein homolog isoform 2 [Homo sa...    30   2.8  
gi|163310749 LIM and calponin homology domains 1 isoform e [Homo...    30   4.8  
gi|163310747 LIM and calponin homology domains 1 isoform d [Homo...    30   4.8  
gi|163310745 LIM and calponin homology domains 1 isoform c [Homo...    30   4.8  
gi|163310743 LIM and calponin homology domains 1 isoform b [Homo...    30   4.8  
gi|163310741 LIM and calponin homology domains 1 isoform a [Homo...    30   4.8  
gi|4504659 interleukin 1 receptor, type I precursor [Homo sapiens]     29   8.2  
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ...    29   8.2  
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ...    29   8.2  
gi|19923084 polycystin-1L1 [Homo sapiens]                              29   8.2  
gi|61102723 hypothetical protein LOC128710 [Homo sapiens]              29   8.2  

>gi|169206175 PREDICTED: similar to hCG28707 [Homo sapiens]
          Length = 386

 Score =  783 bits (2022), Expect = 0.0
 Identities = 386/386 (100%), Positives = 386/386 (100%)

Query: 1   MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS 60
           MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS
Sbjct: 1   MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS 60

Query: 61  TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST 120
           TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST
Sbjct: 61  TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST 120

Query: 121 SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS 180
           SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS
Sbjct: 121 SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS 180

Query: 181 KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL 240
           KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL
Sbjct: 181 KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL 240

Query: 241 PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR 300
           PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR
Sbjct: 241 PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR 300

Query: 301 LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP 360
           LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP
Sbjct: 301 LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP 360

Query: 361 GEDYYETENPKGQWLLRERLWERMVP 386
           GEDYYETENPKGQWLLRERLWERMVP
Sbjct: 361 GEDYYETENPKGQWLLRERLWERMVP 386


>gi|169206491 PREDICTED: similar to hCG28707 [Homo sapiens]
          Length = 386

 Score =  783 bits (2022), Expect = 0.0
 Identities = 386/386 (100%), Positives = 386/386 (100%)

Query: 1   MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS 60
           MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS
Sbjct: 1   MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS 60

Query: 61  TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST 120
           TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST
Sbjct: 61  TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST 120

Query: 121 SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS 180
           SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS
Sbjct: 121 SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS 180

Query: 181 KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL 240
           KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL
Sbjct: 181 KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL 240

Query: 241 PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR 300
           PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR
Sbjct: 241 PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR 300

Query: 301 LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP 360
           LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP
Sbjct: 301 LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP 360

Query: 361 GEDYYETENPKGQWLLRERLWERMVP 386
           GEDYYETENPKGQWLLRERLWERMVP
Sbjct: 361 GEDYYETENPKGQWLLRERLWERMVP 386


>gi|113424170 PREDICTED: similar to hCG28707 [Homo sapiens]
          Length = 486

 Score =  758 bits (1956), Expect = 0.0
 Identities = 374/375 (99%), Positives = 374/375 (99%)

Query: 12  HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN 71
           HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN
Sbjct: 112 HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN 171

Query: 72  SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR 131
           SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR
Sbjct: 172 SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR 231

Query: 132 QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV 191
           QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV
Sbjct: 232 QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV 291

Query: 192 RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT 251
           RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT
Sbjct: 292 RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT 351

Query: 252 SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA 311
           SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA
Sbjct: 352 SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA 411

Query: 312 VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK 371
           VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK
Sbjct: 412 VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK 471

Query: 372 GQWLLRERLWERMVP 386
           GQWLLRERLWER VP
Sbjct: 472 GQWLLRERLWERTVP 486


>gi|39725952 angiogenic factor VG5Q [Homo sapiens]
          Length = 714

 Score = 36.2 bits (82), Expect = 0.051
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 15/178 (8%)

Query: 41  ALIKWRQHRQLE-----GTHRKKSSTMFRKIHSIFNSS-PQRKTAAESPFYEGASPAVKL 94
           +++  + H Q+E     GT R ++    +  H   NS  P    A E    EG+S A  L
Sbjct: 135 SILNSKDHLQVENDAYPGTDRTENVKYRQVDHFASNSQEPASALATEDTSLEGSSLAESL 194

Query: 95  IRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELL 154
            R+++   V   G  + E+   Y   S   T  YY  + +    +Y      + Y  ++ 
Sbjct: 195 -RAAAEAAVSQTGFSYDENTGLYFDHS---TGFYYDSENQ----LYYDPSTGIYYYCDVE 246

Query: 155 ALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKKATPKKYSQFSAD 212
           + R ++ S   DL+P+ T     +  K  K  +K P  S   E K    +    FS +
Sbjct: 247 SGRYQFHSRV-DLQPYPTSSTKQSKDKKLKKKRKDPDSSATNEEKDLNSEDQKAFSVE 303


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 66/294 (22%), Positives = 110/294 (37%), Gaps = 37/294 (12%)

Query: 14   RRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFNSS 73
            R+ARL + ++  + SP  R   R P     + R+   +      + S   R+  S   SS
Sbjct: 1699 RKARLSRRSRSASSSPETRS--RTPP----RHRRSPSVSSPEPAEKSRSSRRRRSA--SS 1750

Query: 74   PQRKTAAESPFYEGASPAVK---LIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYL 130
            P+ KT +      G SP+ K   L RS S        EK   + ++ +S SS  TS    
Sbjct: 1751 PRTKTTSR----RGRSPSPKPRGLQRSRSR----SRREKTRTTRRRDRSGSSQSTSR--- 1799

Query: 131  RQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTP 190
            R++  R+             +  +  R++  S +    P R +  S TSS+  +G  +TP
Sbjct: 1800 RRQRSRS-------------RSRVTRRRRGGSGYHSRSPARQES-SRTSSRRRRGRSRTP 1845

Query: 191  VRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLP-NEDVDFDV 249
              S  +   + +P  + +  +  + A          L + RR R+  + +          
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTS 1905

Query: 250  ATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLER 303
             T  R  S  S    R  R  +  +      +     RR +  RT    RR  R
Sbjct: 1906 VTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR 1959


>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 1 [Homo sapiens]
          Length = 559

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 162 SSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFD 221
           SSFSD KP +         KSS  G+K    S P+E KKA   + S      +E  A F 
Sbjct: 322 SSFSDKKPAK--------DKSSTRGEKVKAESEPREAKKALEVEESN-----SEDEASFK 368

Query: 222 SIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLHS 260
           S  A+        ++++S    D DF+ + +  +  L S
Sbjct: 369 SESAQSSPSNSSSSSDSS---SDSDFEPSQNHSQGPLRS 404


>gi|7662184 zinc finger homeobox 1b [Homo sapiens]
          Length = 1214

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 230 ERRPRAAEASLPNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRS 289
           E  P  ++A LP E+ + ++     EH  H+N IL+A              +VDG     
Sbjct: 69  ESSPHVSQALLPREEEEDEIREGGVEHPWHNNEILQA--------------SVDGPEEMK 114

Query: 290 TEHRTVGTQRRLE 302
            ++ T+G +  ++
Sbjct: 115 EDYDTMGPEATIQ 127


>gi|32528295 ribosomal protein S6 kinase, polypeptide 5 isoform a
           [Homo sapiens]
          Length = 802

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 140 YSRTQDCLQYLQEL-LALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVR----ST 194
           Y R   CLQ + +  LA R+K   + +  +   +   SS SS S   GK TP +    S 
Sbjct: 725 YKREGFCLQNVDKAPLAKRRKMKKTSTSTETRSSSSESSHSSSSHSHGKTTPTKTLQPSN 784

Query: 195 PKEIKKATPKKYSQFSADVA 214
           P +     P+   QFS  VA
Sbjct: 785 PAD--SNNPETLFQFSDSVA 802


>gi|221219004 WD repeat domain 74 [Homo sapiens]
          Length = 385

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 34  DLRAPVNALIKWRQHRQ-LEGTHRKKSSTMFRKIHSIFNSSPQRKTAAESPFYEGASPAV 92
           DLR P+     W Q  Q L G+ +  + T + ++     +SPQR+   E+ + E    A+
Sbjct: 179 DLRVPI-----WDQDIQFLPGSQKLVTCTGYHQVRVYDPASPQRRPVLETTYGEYPLTAM 233

Query: 93  KLIRSSSMYVVGD-HGE 108
            L    +  +VG+ HG+
Sbjct: 234 TLTPGGNSVIVGNTHGQ 250


>gi|9910418 mouse Mdm1 nuclear protein homolog isoform 2 [Homo
           sapiens]
          Length = 222

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 233 PRAAEASLPNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEH 292
           P A E     E    DV T  R HSL ++ + +  R HS D  A     V+      T H
Sbjct: 86  PEAPETPKSQEAEQKDV-TQERVHSLEASRVPKRTRSHSADSRAEGASDVENN-EGVTNH 143

Query: 293 RTVGTQRRLERHPIYLPKAVE---GAFNTWKFK 322
             V     LE     L + V+   G F  + FK
Sbjct: 144 TPVNENVELEHSTKVLSENVDNGVGIFTAFLFK 176


>gi|163310749 LIM and calponin homology domains 1 isoform e [Homo
           sapiens]
          Length = 890

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 159 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 209
           KYL   S   P  T  + +T +++S        G  +P ++ TPK +   TPK YSQ   
Sbjct: 321 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 380

Query: 210 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 241
           S DV +       +    +T  R    E   P
Sbjct: 381 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 412


>gi|163310747 LIM and calponin homology domains 1 isoform d [Homo
           sapiens]
          Length = 902

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 159 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 209
           KYL   S   P  T  + +T +++S        G  +P ++ TPK +   TPK YSQ   
Sbjct: 333 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 392

Query: 210 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 241
           S DV +       +    +T  R    E   P
Sbjct: 393 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 424


>gi|163310745 LIM and calponin homology domains 1 isoform c [Homo
           sapiens]
          Length = 1056

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 159 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 209
           KYL   S   P  T  + +T +++S        G  +P ++ TPK +   TPK YSQ   
Sbjct: 487 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 546

Query: 210 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 241
           S DV +       +    +T  R    E   P
Sbjct: 547 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 578


>gi|163310743 LIM and calponin homology domains 1 isoform b [Homo
           sapiens]
          Length = 1057

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 159 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 209
           KYL   S   P  T  + +T +++S        G  +P ++ TPK +   TPK YSQ   
Sbjct: 487 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 546

Query: 210 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 241
           S DV +       +    +T  R    E   P
Sbjct: 547 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 578


>gi|163310741 LIM and calponin homology domains 1 isoform a [Homo
           sapiens]
          Length = 1083

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 159 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 209
           KYL   S   P  T  + +T +++S        G  +P ++ TPK +   TPK YSQ   
Sbjct: 487 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 546

Query: 210 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 241
           S DV +       +    +T  R    E   P
Sbjct: 547 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 578


>gi|4504659 interleukin 1 receptor, type I precursor [Homo sapiens]
          Length = 569

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 329 DLGSSRQILFNFSGEDME-----WDAELFALEPQLSPGEDYYETENP 370
           DLGS  Q++ N +G+  +     W+  +   +  +  GEDYY  ENP
Sbjct: 239 DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVL-GEDYYSVENP 284


>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
           sapiens]
          Length = 582

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 2/133 (1%)

Query: 142 RTQDCLQYLQELLALRKKYLSSFSDLKP-HRTQGISSTS-SKSSKGGKKTPVRSTPKEIK 199
           + +D +Q  +E +      +S     +P      I ST   K     KK   R     + 
Sbjct: 229 KKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDRVEASSLP 288

Query: 200 KATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLH 259
           +    K  + S++ AE++A    +   +  +    A+EAS  N D++           L 
Sbjct: 289 EVRTGKRKRSSSEDAESLAPRSKVKKIIQKDIIKEASEASKENRDIEISTEEEKDTGDLK 348

Query: 260 SNWILRAPRRHSE 272
            + +L+  R+H +
Sbjct: 349 DSSLLKTKRKHKK 361


>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
           sapiens]
          Length = 582

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 2/133 (1%)

Query: 142 RTQDCLQYLQELLALRKKYLSSFSDLKP-HRTQGISSTS-SKSSKGGKKTPVRSTPKEIK 199
           + +D +Q  +E +      +S     +P      I ST   K     KK   R     + 
Sbjct: 229 KKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDRVEASSLP 288

Query: 200 KATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLH 259
           +    K  + S++ AE++A    +   +  +    A+EAS  N D++           L 
Sbjct: 289 EVRTGKRKRSSSEDAESLAPRSKVKKIIQKDIIKEASEASKENRDIEISTEEEKDTGDLK 348

Query: 260 SNWILRAPRRHSE 272
            + +L+  R+H +
Sbjct: 349 DSSLLKTKRKHKK 361


>gi|19923084 polycystin-1L1 [Homo sapiens]
          Length = 2849

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 209  FSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLHSNW 262
            F+  + EA    DS +AE    R P ++  S+P+   + +   ++R+ + H  W
Sbjct: 2205 FTESLCEATRDLDSELAERSWTRLPFSSSCSIPDCAGEVEKVLAARQQARHLRW 2258


>gi|61102723 hypothetical protein LOC128710 [Homo sapiens]
          Length = 408

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 10/104 (9%)

Query: 147 LQYLQELLA-----LRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKKA 201
           L + ++LLA     L ++ L   SD      +     S+K  +   K  V+ T  E K +
Sbjct: 121 LAFSRDLLASQNEDLTERVLHGVSDYFAECAESSLPPSAKLRRNALKEIVKRT--ETKSS 178

Query: 202 TPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDV 245
              K SQ   D  E  +  DS+IAE+   R    A +S P+E +
Sbjct: 179 VTSK-SQTRRDTVETSS--DSVIAEIARRRNDGQASSSPPSESM 219


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.129    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,977,421
Number of Sequences: 37866
Number of extensions: 649225
Number of successful extensions: 2161
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2150
Number of HSP's gapped (non-prelim): 25
length of query: 386
length of database: 18,247,518
effective HSP length: 104
effective length of query: 282
effective length of database: 14,309,454
effective search space: 4035266028
effective search space used: 4035266028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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