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Search of human proteins with 169206175
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169206175 PREDICTED: similar to hCG28707 [Homo sapiens]
(386 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206175 PREDICTED: similar to hCG28707 [Homo sapiens] 783 0.0
gi|169206491 PREDICTED: similar to hCG28707 [Homo sapiens] 783 0.0
gi|113424170 PREDICTED: similar to hCG28707 [Homo sapiens] 758 0.0
gi|39725952 angiogenic factor VG5Q [Homo sapiens] 36 0.051
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.43
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 33 0.57
gi|7662184 zinc finger homeobox 1b [Homo sapiens] 31 2.2
gi|32528295 ribosomal protein S6 kinase, polypeptide 5 isoform a... 31 2.2
gi|221219004 WD repeat domain 74 [Homo sapiens] 31 2.2
gi|9910418 mouse Mdm1 nuclear protein homolog isoform 2 [Homo sa... 30 2.8
gi|163310749 LIM and calponin homology domains 1 isoform e [Homo... 30 4.8
gi|163310747 LIM and calponin homology domains 1 isoform d [Homo... 30 4.8
gi|163310745 LIM and calponin homology domains 1 isoform c [Homo... 30 4.8
gi|163310743 LIM and calponin homology domains 1 isoform b [Homo... 30 4.8
gi|163310741 LIM and calponin homology domains 1 isoform a [Homo... 30 4.8
gi|4504659 interleukin 1 receptor, type I precursor [Homo sapiens] 29 8.2
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 29 8.2
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 29 8.2
gi|19923084 polycystin-1L1 [Homo sapiens] 29 8.2
gi|61102723 hypothetical protein LOC128710 [Homo sapiens] 29 8.2
>gi|169206175 PREDICTED: similar to hCG28707 [Homo sapiens]
Length = 386
Score = 783 bits (2022), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS 60
MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS
Sbjct: 1 MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS 60
Query: 61 TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST 120
TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST
Sbjct: 61 TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST 120
Query: 121 SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS 180
SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS
Sbjct: 121 SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS 180
Query: 181 KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL 240
KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL
Sbjct: 181 KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL 240
Query: 241 PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR 300
PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR
Sbjct: 241 PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR 300
Query: 301 LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP 360
LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP
Sbjct: 301 LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP 360
Query: 361 GEDYYETENPKGQWLLRERLWERMVP 386
GEDYYETENPKGQWLLRERLWERMVP
Sbjct: 361 GEDYYETENPKGQWLLRERLWERMVP 386
>gi|169206491 PREDICTED: similar to hCG28707 [Homo sapiens]
Length = 386
Score = 783 bits (2022), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS 60
MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS
Sbjct: 1 MGCYPVTAVRSHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSS 60
Query: 61 TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST 120
TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST
Sbjct: 61 TMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKST 120
Query: 121 SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS 180
SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS
Sbjct: 121 SSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSS 180
Query: 181 KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL 240
KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL
Sbjct: 181 KSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASL 240
Query: 241 PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR 300
PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR
Sbjct: 241 PNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRR 300
Query: 301 LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP 360
LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP
Sbjct: 301 LERHPIYLPKAVEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSP 360
Query: 361 GEDYYETENPKGQWLLRERLWERMVP 386
GEDYYETENPKGQWLLRERLWERMVP
Sbjct: 361 GEDYYETENPKGQWLLRERLWERMVP 386
>gi|113424170 PREDICTED: similar to hCG28707 [Homo sapiens]
Length = 486
Score = 758 bits (1956), Expect = 0.0
Identities = 374/375 (99%), Positives = 374/375 (99%)
Query: 12 HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN 71
HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN
Sbjct: 112 HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN 171
Query: 72 SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR 131
SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR
Sbjct: 172 SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR 231
Query: 132 QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV 191
QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV
Sbjct: 232 QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV 291
Query: 192 RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT 251
RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT
Sbjct: 292 RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT 351
Query: 252 SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA 311
SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA
Sbjct: 352 SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA 411
Query: 312 VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK 371
VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK
Sbjct: 412 VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK 471
Query: 372 GQWLLRERLWERMVP 386
GQWLLRERLWER VP
Sbjct: 472 GQWLLRERLWERTVP 486
>gi|39725952 angiogenic factor VG5Q [Homo sapiens]
Length = 714
Score = 36.2 bits (82), Expect = 0.051
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 15/178 (8%)
Query: 41 ALIKWRQHRQLE-----GTHRKKSSTMFRKIHSIFNSS-PQRKTAAESPFYEGASPAVKL 94
+++ + H Q+E GT R ++ + H NS P A E EG+S A L
Sbjct: 135 SILNSKDHLQVENDAYPGTDRTENVKYRQVDHFASNSQEPASALATEDTSLEGSSLAESL 194
Query: 95 IRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELL 154
R+++ V G + E+ Y S T YY + + +Y + Y ++
Sbjct: 195 -RAAAEAAVSQTGFSYDENTGLYFDHS---TGFYYDSENQ----LYYDPSTGIYYYCDVE 246
Query: 155 ALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKKATPKKYSQFSAD 212
+ R ++ S DL+P+ T + K K +K P S E K + FS +
Sbjct: 247 SGRYQFHSRV-DLQPYPTSSTKQSKDKKLKKKRKDPDSSATNEEKDLNSEDQKAFSVE 303
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.1 bits (74), Expect = 0.43
Identities = 66/294 (22%), Positives = 110/294 (37%), Gaps = 37/294 (12%)
Query: 14 RRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFNSS 73
R+ARL + ++ + SP R R P + R+ + + S R+ S SS
Sbjct: 1699 RKARLSRRSRSASSSPETRS--RTPP----RHRRSPSVSSPEPAEKSRSSRRRRSA--SS 1750
Query: 74 PQRKTAAESPFYEGASPAVK---LIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYL 130
P+ KT + G SP+ K L RS S EK + ++ +S SS TS
Sbjct: 1751 PRTKTTSR----RGRSPSPKPRGLQRSRSR----SRREKTRTTRRRDRSGSSQSTSR--- 1799
Query: 131 RQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTP 190
R++ R+ + + R++ S + P R + S TSS+ +G +TP
Sbjct: 1800 RRQRSRS-------------RSRVTRRRRGGSGYHSRSPARQES-SRTSSRRRRGRSRTP 1845
Query: 191 VRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLP-NEDVDFDV 249
S + + +P + + + + A L + RR R+ + +
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTS 1905
Query: 250 ATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLER 303
T R S S R R + + + RR + RT RR R
Sbjct: 1906 VTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR 1959
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 32.7 bits (73), Expect = 0.57
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 162 SSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFD 221
SSFSD KP + KSS G+K S P+E KKA + S +E A F
Sbjct: 322 SSFSDKKPAK--------DKSSTRGEKVKAESEPREAKKALEVEESN-----SEDEASFK 368
Query: 222 SIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLHS 260
S A+ ++++S D DF+ + + + L S
Sbjct: 369 SESAQSSPSNSSSSSDSS---SDSDFEPSQNHSQGPLRS 404
>gi|7662184 zinc finger homeobox 1b [Homo sapiens]
Length = 1214
Score = 30.8 bits (68), Expect = 2.2
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 230 ERRPRAAEASLPNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRS 289
E P ++A LP E+ + ++ EH H+N IL+A +VDG
Sbjct: 69 ESSPHVSQALLPREEEEDEIREGGVEHPWHNNEILQA--------------SVDGPEEMK 114
Query: 290 TEHRTVGTQRRLE 302
++ T+G + ++
Sbjct: 115 EDYDTMGPEATIQ 127
>gi|32528295 ribosomal protein S6 kinase, polypeptide 5 isoform a
[Homo sapiens]
Length = 802
Score = 30.8 bits (68), Expect = 2.2
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 140 YSRTQDCLQYLQEL-LALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVR----ST 194
Y R CLQ + + LA R+K + + + + SS SS S GK TP + S
Sbjct: 725 YKREGFCLQNVDKAPLAKRRKMKKTSTSTETRSSSSESSHSSSSHSHGKTTPTKTLQPSN 784
Query: 195 PKEIKKATPKKYSQFSADVA 214
P + P+ QFS VA
Sbjct: 785 PAD--SNNPETLFQFSDSVA 802
>gi|221219004 WD repeat domain 74 [Homo sapiens]
Length = 385
Score = 30.8 bits (68), Expect = 2.2
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 34 DLRAPVNALIKWRQHRQ-LEGTHRKKSSTMFRKIHSIFNSSPQRKTAAESPFYEGASPAV 92
DLR P+ W Q Q L G+ + + T + ++ +SPQR+ E+ + E A+
Sbjct: 179 DLRVPI-----WDQDIQFLPGSQKLVTCTGYHQVRVYDPASPQRRPVLETTYGEYPLTAM 233
Query: 93 KLIRSSSMYVVGD-HGE 108
L + +VG+ HG+
Sbjct: 234 TLTPGGNSVIVGNTHGQ 250
>gi|9910418 mouse Mdm1 nuclear protein homolog isoform 2 [Homo
sapiens]
Length = 222
Score = 30.4 bits (67), Expect = 2.8
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 233 PRAAEASLPNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEH 292
P A E E DV T R HSL ++ + + R HS D A V+ T H
Sbjct: 86 PEAPETPKSQEAEQKDV-TQERVHSLEASRVPKRTRSHSADSRAEGASDVENN-EGVTNH 143
Query: 293 RTVGTQRRLERHPIYLPKAVE---GAFNTWKFK 322
V LE L + V+ G F + FK
Sbjct: 144 TPVNENVELEHSTKVLSENVDNGVGIFTAFLFK 176
>gi|163310749 LIM and calponin homology domains 1 isoform e [Homo
sapiens]
Length = 890
Score = 29.6 bits (65), Expect = 4.8
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 159 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 209
KYL S P T + +T +++S G +P ++ TPK + TPK YSQ
Sbjct: 321 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 380
Query: 210 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 241
S DV + + +T R E P
Sbjct: 381 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 412
>gi|163310747 LIM and calponin homology domains 1 isoform d [Homo
sapiens]
Length = 902
Score = 29.6 bits (65), Expect = 4.8
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 159 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 209
KYL S P T + +T +++S G +P ++ TPK + TPK YSQ
Sbjct: 333 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 392
Query: 210 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 241
S DV + + +T R E P
Sbjct: 393 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 424
>gi|163310745 LIM and calponin homology domains 1 isoform c [Homo
sapiens]
Length = 1056
Score = 29.6 bits (65), Expect = 4.8
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 159 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 209
KYL S P T + +T +++S G +P ++ TPK + TPK YSQ
Sbjct: 487 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 546
Query: 210 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 241
S DV + + +T R E P
Sbjct: 547 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 578
>gi|163310743 LIM and calponin homology domains 1 isoform b [Homo
sapiens]
Length = 1057
Score = 29.6 bits (65), Expect = 4.8
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 159 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 209
KYL S P T + +T +++S G +P ++ TPK + TPK YSQ
Sbjct: 487 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 546
Query: 210 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 241
S DV + + +T R E P
Sbjct: 547 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 578
>gi|163310741 LIM and calponin homology domains 1 isoform a [Homo
sapiens]
Length = 1083
Score = 29.6 bits (65), Expect = 4.8
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 159 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 209
KYL S P T + +T +++S G +P ++ TPK + TPK YSQ
Sbjct: 487 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 546
Query: 210 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 241
S DV + + +T R E P
Sbjct: 547 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 578
>gi|4504659 interleukin 1 receptor, type I precursor [Homo sapiens]
Length = 569
Score = 28.9 bits (63), Expect = 8.2
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 329 DLGSSRQILFNFSGEDME-----WDAELFALEPQLSPGEDYYETENP 370
DLGS Q++ N +G+ + W+ + + + GEDYY ENP
Sbjct: 239 DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVL-GEDYYSVENP 284
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 28.9 bits (63), Expect = 8.2
Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 2/133 (1%)
Query: 142 RTQDCLQYLQELLALRKKYLSSFSDLKP-HRTQGISSTS-SKSSKGGKKTPVRSTPKEIK 199
+ +D +Q +E + +S +P I ST K KK R +
Sbjct: 229 KKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDRVEASSLP 288
Query: 200 KATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLH 259
+ K + S++ AE++A + + + A+EAS N D++ L
Sbjct: 289 EVRTGKRKRSSSEDAESLAPRSKVKKIIQKDIIKEASEASKENRDIEISTEEEKDTGDLK 348
Query: 260 SNWILRAPRRHSE 272
+ +L+ R+H +
Sbjct: 349 DSSLLKTKRKHKK 361
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 28.9 bits (63), Expect = 8.2
Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 2/133 (1%)
Query: 142 RTQDCLQYLQELLALRKKYLSSFSDLKP-HRTQGISSTS-SKSSKGGKKTPVRSTPKEIK 199
+ +D +Q +E + +S +P I ST K KK R +
Sbjct: 229 KKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDRVEASSLP 288
Query: 200 KATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLH 259
+ K + S++ AE++A + + + A+EAS N D++ L
Sbjct: 289 EVRTGKRKRSSSEDAESLAPRSKVKKIIQKDIIKEASEASKENRDIEISTEEEKDTGDLK 348
Query: 260 SNWILRAPRRHSE 272
+ +L+ R+H +
Sbjct: 349 DSSLLKTKRKHKK 361
>gi|19923084 polycystin-1L1 [Homo sapiens]
Length = 2849
Score = 28.9 bits (63), Expect = 8.2
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 209 FSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLHSNW 262
F+ + EA DS +AE R P ++ S+P+ + + ++R+ + H W
Sbjct: 2205 FTESLCEATRDLDSELAERSWTRLPFSSSCSIPDCAGEVEKVLAARQQARHLRW 2258
>gi|61102723 hypothetical protein LOC128710 [Homo sapiens]
Length = 408
Score = 28.9 bits (63), Expect = 8.2
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 147 LQYLQELLA-----LRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKKA 201
L + ++LLA L ++ L SD + S+K + K V+ T E K +
Sbjct: 121 LAFSRDLLASQNEDLTERVLHGVSDYFAECAESSLPPSAKLRRNALKEIVKRT--ETKSS 178
Query: 202 TPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDV 245
K SQ D E + DS+IAE+ R A +S P+E +
Sbjct: 179 VTSK-SQTRRDTVETSS--DSVIAEIARRRNDGQASSSPPSESM 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,977,421
Number of Sequences: 37866
Number of extensions: 649225
Number of successful extensions: 2161
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2150
Number of HSP's gapped (non-prelim): 25
length of query: 386
length of database: 18,247,518
effective HSP length: 104
effective length of query: 282
effective length of database: 14,309,454
effective search space: 4035266028
effective search space used: 4035266028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.