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Search of human proteins with 169205491
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169205491 PREDICTED: hypothetical protein [Homo sapiens]
(86 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169205491 PREDICTED: hypothetical protein [Homo sapiens] 191 8e-50
gi|169204438 PREDICTED: hypothetical protein [Homo sapiens] 191 8e-50
gi|169204952 PREDICTED: hypothetical protein [Homo sapiens] 186 3e-48
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 37 0.003
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap... 37 0.004
gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens] 35 0.017
gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens] 35 0.017
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 35 0.017
gi|65508004 Wilms tumor 1 isoform D [Homo sapiens] 34 0.028
gi|65507908 Wilms tumor 1 isoform C [Homo sapiens] 34 0.028
gi|65507817 Wilms tumor 1 isoform B [Homo sapiens] 34 0.028
gi|65507714 Wilms tumor 1 isoform A [Homo sapiens] 34 0.028
gi|116292174 fidgetin-like 2 [Homo sapiens] 33 0.037
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi... 33 0.037
gi|153792074 proline rich 12 [Homo sapiens] 33 0.037
gi|148922889 scleraxis homolog B [Homo sapiens] 33 0.048
gi|251823730 cat eye syndrome chromosome region, candidate 6 iso... 33 0.048
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 33 0.048
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 33 0.048
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 33 0.048
gi|186972126 scleraxis homolog A [Homo sapiens] 33 0.048
gi|191252816 extracellular leucine-rich repeat and fibronectin t... 33 0.063
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 33 0.063
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 33 0.063
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 33 0.063
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 33 0.063
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 33 0.063
gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b ... 33 0.063
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 33 0.063
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.063
>gi|169205491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 191 bits (486), Expect = 8e-50
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MTSRGEWWGLRMKRSGFSSQLCYEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPP 60
MTSRGEWWGLRMKRSGFSSQLCYEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPP
Sbjct: 1 MTSRGEWWGLRMKRSGFSSQLCYEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPP 60
Query: 61 PPPDRGIRRFPRQRNLRPQSQHLGGT 86
PPPDRGIRRFPRQRNLRPQSQHLGGT
Sbjct: 61 PPPDRGIRRFPRQRNLRPQSQHLGGT 86
>gi|169204438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 191 bits (486), Expect = 8e-50
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MTSRGEWWGLRMKRSGFSSQLCYEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPP 60
MTSRGEWWGLRMKRSGFSSQLCYEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPP
Sbjct: 1 MTSRGEWWGLRMKRSGFSSQLCYEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPP 60
Query: 61 PPPDRGIRRFPRQRNLRPQSQHLGGT 86
PPPDRGIRRFPRQRNLRPQSQHLGGT
Sbjct: 61 PPPDRGIRRFPRQRNLRPQSQHLGGT 86
>gi|169204952 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 186 bits (473), Expect = 3e-48
Identities = 86/88 (97%), Positives = 86/88 (97%), Gaps = 2/88 (2%)
Query: 1 MTSRGEWWGLRMKRSGFSSQLCYEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLP-- 58
MTSRGEWWGLRMKRSGFSSQLCYEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLP
Sbjct: 1 MTSRGEWWGLRMKRSGFSSQLCYEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPP 60
Query: 59 PPPPPDRGIRRFPRQRNLRPQSQHLGGT 86
PPPPPDRGIRRFPRQRNLRPQSQHLGGT
Sbjct: 61 PPPPPDRGIRRFPRQRNLRPQSQHLGGT 88
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 26 ALDGPVGR------GHRRLGPGAQHCSRTGGLK-PSPPLPPPPPP 63
AL GP G G RR G ++ GL P PPLPPPPPP
Sbjct: 213 ALSGPSGEEGLSPGGKRRRGCNSEQTGLPPGLPLPPPPLPPPPPP 257
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 12/48 (25%)
Query: 35 HRRLGPGAQHCSRTG-----------GLKPSPPLPPPPPPDRGIRRFP 71
H RLGP A H SR L P P PPPPP R +R P
Sbjct: 435 HGRLGPSA-HSSRKPFLGAPAATPHLSLPPGPSSPPPPPCPRLLRPPP 481
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 52 KPSPPLPPPPPPDRGIRRFPRQRNLRP 78
KP P LPPPPP + +FP +P
Sbjct: 770 KPPPALPPPPP----LAKFPPPSQPQP 792
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
PS P PPPPPP
Sbjct: 787 PSQPQPPPPPP 797
>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sapiens]
Length = 1258
Score = 36.6 bits (83), Expect = 0.004
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 35 HRRLGPGAQHCSRTGGLKPSPPLPPPPPPDRGI 67
H R+G G+ +GG P P PPPP PD I
Sbjct: 1031 HPRVGEGSSSDEESGGTLPPPDFPPPPLPDSAI 1063
>gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens]
Length = 849
Score = 34.7 bits (78), Expect = 0.017
Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 GRGHRRLGPGAQHCSRTGGLKPSPPLPPPPPPDRGIR 68
G GH L P S GG P PP PPPPPP G+R
Sbjct: 306 GTGHSALPPPPPLPS--GGGVPPPPPPPPPPPLPGMR 340
>gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens]
Length = 1193
Score = 34.7 bits (78), Expect = 0.017
Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 GRGHRRLGPGAQHCSRTGGLKPSPPLPPPPPPDRGIR 68
G GH L P S GG P PP PPPPPP G+R
Sbjct: 569 GTGHSALPPPPPLPS--GGGVPPPPPPPPPPPLPGMR 603
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 14 RSGFSSQLCYEEALDGPVGRGHRRLGPGAQ---HCSRTGGLK-----PSPPLPPPPPPDR 65
++ + +C +E + P GH R G + + + G K P PPLPPPPPP
Sbjct: 509 KNKLTCSICLKEFKNLPALNGHMRSHGGMRASPNLKQEEGEKVLPPQPQPPLPPPPPPPP 568
Query: 66 GIRRFPRQRNLRP 78
+ P +L P
Sbjct: 569 PPQLPPEAESLTP 581
>gi|65508004 Wilms tumor 1 isoform D [Homo sapiens]
Length = 517
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 40 PGAQHCSRTGGLKP--SPPLPPPPPPDRGIRRFPRQRNLRPQSQ 81
PGA GG P +PP PPPPPP I++ P P +
Sbjct: 111 PGASAYGSLGGPAPPPAPPPPPPPPPHSFIKQEPSWGGAEPHEE 154
>gi|65507908 Wilms tumor 1 isoform C [Homo sapiens]
Length = 500
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 40 PGAQHCSRTGGLKP--SPPLPPPPPPDRGIRRFPRQRNLRPQSQ 81
PGA GG P +PP PPPPPP I++ P P +
Sbjct: 111 PGASAYGSLGGPAPPPAPPPPPPPPPHSFIKQEPSWGGAEPHEE 154
>gi|65507817 Wilms tumor 1 isoform B [Homo sapiens]
Length = 514
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 40 PGAQHCSRTGGLKP--SPPLPPPPPPDRGIRRFPRQRNLRPQSQ 81
PGA GG P +PP PPPPPP I++ P P +
Sbjct: 111 PGASAYGSLGGPAPPPAPPPPPPPPPHSFIKQEPSWGGAEPHEE 154
>gi|65507714 Wilms tumor 1 isoform A [Homo sapiens]
Length = 497
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 40 PGAQHCSRTGGLKP--SPPLPPPPPPDRGIRRFPRQRNLRPQSQ 81
PGA GG P +PP PPPPPP I++ P P +
Sbjct: 111 PGASAYGSLGGPAPPPAPPPPPPPPPHSFIKQEPSWGGAEPHEE 154
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 32 GRGHRRLGPGAQHCSRTGGLKPSPP----LPPPPPPDRG 66
G G L PG +C++TG P PP L PPPPP G
Sbjct: 161 GYGGGYLAPG--YCAQTGAALPPPPPAALLQPPPPPGYG 197
>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
sapiens]
Length = 694
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 28 DGPVGRGHRRLGPGAQHCSRTGGLK--PSPPLPPPPPPDRG 66
D G G RR G + S G K PPLPPPPP +G
Sbjct: 157 DSGEGPGRRRADNGEEGASLGSGWKLTEEPPLPPPPPRRKG 197
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 33.5 bits (75), Expect = 0.037
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 19 SQLCYEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPPPPPDRGIRRFPRQRNLRP 78
S L +E G V LGP ++T +P PP PPPPP R P Q NL
Sbjct: 201 SSLGFERLAGGGV------LGPAGLGPAQTPPYRPGPPDPPPPP-----RHLPTQFNLLA 249
Query: 79 QS 80
S
Sbjct: 250 SS 251
Score = 30.8 bits (68), Expect = 0.24
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 46 SRTGGLKPSPPLPPPPPP 63
+R G +P PP PPPPPP
Sbjct: 828 TRDGAPQPPPPPPPPPPP 845
Score = 30.0 bits (66), Expect = 0.41
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 53 PSPPLPPPPPP 63
P PPLPPPPPP
Sbjct: 1497 PPPPLPPPPPP 1507
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 25 EALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPPPPPDRGI 67
+ L GP G G AQ S+ PP PP PP G+
Sbjct: 449 QGLLGPQAYGQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPPGL 491
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 1039 PPPPPPPPPPP 1049
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 53 PSPPLPPPPPPDRGIRRFPRQRNLRP 78
P PP PPPPP + R L P
Sbjct: 836 PPPPPPPPPPMPLQLEAHLRSHGLEP 861
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 47 RTGGLKPSPPLPPPPPP 63
++G + +PP PPPPPP
Sbjct: 1031 QSGPHQAAPPPPPPPPP 1047
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 33.1 bits (74), Expect = 0.048
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 39 GPGAQHCSRTGGLKPSPPLPPPPPPDR-GIRRFPRQ 73
GP H +R G SPP PPPPPP R G P+Q
Sbjct: 146 GPAFFHAARAG----SPPPPPPPPPARDGENTQPKQ 177
>gi|251823730 cat eye syndrome chromosome region, candidate 6
isoform b [Homo sapiens]
Length = 223
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 25 EALDGPVGRGHRRLGPGAQHCSRTG-GLKPSPPLPPPPPPDRG 66
EAL+G RG+R + +R G G PS P PPPPPP G
Sbjct: 158 EALEGCWDRGNR----ASPSRARGGYGAPPSAPPPPPPPPQGG 196
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 25 EALDGPVGRGHRRLGPGAQHCSRTG-GLKPSPPLPPPPPPDRG 66
EAL+G RG+R + +R G G PS P PPPPPP G
Sbjct: 513 EALEGCWDRGNR----ASPSRARGGYGAPPSAPPPPPPPPQGG 551
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 33.1 bits (74), Expect = 0.048
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 51 LKPSPPLPPPPPPDRGIRRFPR 72
++ PLPPPPPP RG + PR
Sbjct: 307 MRRQEPLPPPPPPSRGGNQLPR 328
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/36 (41%), Positives = 15/36 (41%)
Query: 50 GLKPSPPLPPPPPPDRGIRRFPRQRNLRPQSQHLGG 85
G P PP PPPPPP P L P GG
Sbjct: 389 GGPPMPPPPPPPPPPPSSGNGPAPPPLPPALVPAGG 424
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 37 RLGPGAQHCSRTGGLKPSPPLPPPPPP 63
R GP GG PP PPPPPP
Sbjct: 377 RSGPLPPPPPGAGGPPMPPPPPPPPPP 403
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 50 GLKPSPPLP-PPPPPDRG 66
G+ P PP P PPPP RG
Sbjct: 348 GIAPPPPTPRGPPPPGRG 365
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 33.1 bits (74), Expect = 0.048
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 29 GPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPPPPPDRGIR 68
GP+ RG GPG H R GG + P PPPPPP RG R
Sbjct: 690 GPM-RGGPGPGPGPYHRGR-GGRGGNEP-PPPPPPFRGAR 726
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 29 GPVGRGHRRLGPGAQHCSRTGGLKPSPPLPP----PPPPDRG 66
GP G H GPG GG P P+ P PPPP RG
Sbjct: 636 GPKGMQHFPPGPGGPMPGPHGG--PGGPVGPRLLGPPPPPRG 675
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 33.1 bits (74), Expect = 0.048
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 39 GPGAQHCSRTGGLKPSPPLPPPPPPDR-GIRRFPRQ 73
GP H +R G SPP PPPPPP R G P+Q
Sbjct: 146 GPAFFHAARAG----SPPPPPPPPPARDGENTQPKQ 177
>gi|191252816 extracellular leucine-rich repeat and fibronectin type
III domain containing 1 [Homo sapiens]
Length = 828
Score = 32.7 bits (73), Expect = 0.063
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 35 HRRLGPGAQHCSRTGGLKPSPPLPPPPPPDRGIRR 69
HR PG+ P+PP PPPPPP G+ R
Sbjct: 703 HRHSYPGSHPAE-----PPAPPGPPPPPPHEGLGR 732
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 32.7 bits (73), Expect = 0.063
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 53 PSPPLPPPPPPDRGIRRFPRQRNL 76
P+PP PPPPPP + + P R L
Sbjct: 693 PAPPPPPPPPPPPPLAQHPHHRGL 716
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 55 PPLPPPPPPDRGIRRFPRQRNLRPQ 79
PP PPPPPP + P + RP+
Sbjct: 286 PPPPPPPPPLAELAGAPHAHHKRPR 310
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 32.7 bits (73), Expect = 0.063
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 20/69 (28%)
Query: 29 GPVGRGHRRLGPGAQHCSRTGGLKPSPPL------------PPPPPPDRGIRRFPRQRNL 76
GPVG +R G G + +R P+ P PPPPPP R R R+L
Sbjct: 106 GPVGTKPKRPGQGRRAGARMRSAAPASPRARAARAISNQSSPPPPPPSRA-----RSRSL 160
Query: 77 R---PQSQH 82
R P S+H
Sbjct: 161 RLSAPGSRH 169
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 32.7 bits (73), Expect = 0.063
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 53 PSPPLPPPPPPDRGIRRFPRQRNL 76
P+PP PPPPPP + + P R L
Sbjct: 693 PAPPPPPPPPPPPPLAQHPHHRGL 716
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 55 PPLPPPPPPDRGIRRFPRQRNLRPQ 79
PP PPPPPP + P + RP+
Sbjct: 286 PPPPPPPPPLAELAGAPHAHHKRPR 310
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 32.7 bits (73), Expect = 0.063
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 53 PSPPLPPPPPPDRGIRRFPRQRNL 76
P+PP PPPPPP + + P R L
Sbjct: 693 PAPPPPPPPPPPPPLAQHPHHRGL 716
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 55 PPLPPPPPPDRGIRRFPRQRNLRPQ 79
PP PPPPPP + P + RP+
Sbjct: 286 PPPPPPPPPLAELAGAPHAHHKRPR 310
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 32.7 bits (73), Expect = 0.063
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 20/69 (28%)
Query: 29 GPVGRGHRRLGPGAQHCSRTGGLKPSPPL------------PPPPPPDRGIRRFPRQRNL 76
GPVG +R G G + +R P+ P PPPPPP R R R+L
Sbjct: 106 GPVGTKPKRPGQGRRAGARMRSAAPASPRARAARAISNQSSPPPPPPSRA-----RSRSL 160
Query: 77 R---PQSQH 82
R P S+H
Sbjct: 161 RLSAPGSRH 169
>gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
[Homo sapiens]
Length = 456
Score = 32.7 bits (73), Expect = 0.063
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 23 YEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPPPPPDRG 66
YE GP GHRR GP SR G PP PPPPPP+ G
Sbjct: 207 YEGRRMGPPVGGHRR-GP-----SRYGPQYGHPP-PPPPPPEYG 243
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 32.7 bits (73), Expect = 0.063
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 23 YEEALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPPPPPDRG 66
YE GP GHRR GP SR G PP PPPPPP+ G
Sbjct: 340 YEGRRMGPPVGGHRR-GP-----SRYGPQYGHPP-PPPPPPEYG 376
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.7 bits (73), Expect = 0.063
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 29 GPVGRGHRRLGPGAQHCSRTGGLKPSPPLP---PPPPPDRGIRRFPRQR--NLRPQSQHL 83
GP ++ GPG +TG KP LP PPP G + P Q+ + +P SQ
Sbjct: 445 GPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQP 504
Query: 84 GGT 86
G T
Sbjct: 505 GST 507
Score = 27.7 bits (60), Expect = 2.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 52 KPSPPLPPPPPP 63
+P PP PPPPPP
Sbjct: 2404 QPPPPPPPPPPP 2415
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2406 PPPPPPPPPPP 2416
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2407 PPPPPPPPPPP 2417
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2408 PPPPPPPPPPP 2418
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2409 PPPPPPPPPPP 2419
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2410 PPPPPPPPPPP 2420
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2411 PPPPPPPPPPP 2421
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2412 PPPPPPPPPPP 2422
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2413 PPPPPPPPPPP 2423
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2414 PPPPPPPPPPP 2424
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2415 PPPPPPPPPPP 2425
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 53 PSPPLPPPPPP 63
P PP PPPPPP
Sbjct: 2416 PPPPPPPPPPP 2426
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 38 LGPGAQHCSRTGGLKPSPPLPPP----PPPDRGIRRFPRQR--NLRPQSQHLG 84
LGP +TG KPS P P PP G+ + P Q+ +P +Q +G
Sbjct: 366 LGPAKPPAQQTGSEKPSSEQPGPKALAQPP--GVGKTPAQQPGPAKPPTQQVG 416
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.142 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,682,952
Number of Sequences: 37866
Number of extensions: 382574
Number of successful extensions: 9376
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 5134
Number of HSP's gapped (non-prelim): 3227
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.