Guide to the Human Genome
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Name: C7orf41 Sequence: fasta or formatted (131aa) NCBI GI: 116008440
Description:

hypothetical protein LOC222166

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          9           1
 C cysteine            3.8          5           1
 D aspartate          10.7         14           3
 E glutamate          12.2         16           4
 F phenylalanine       6.9          9           1
 G glycine             4.6          6           1
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              3.8          5           2
 L leucine             8.4         11           2
 M methionine          2.3          3           1
 N asparagine          2.3          3           1
 P proline             6.1          8           1
 Q glutamine           5.3          7           2
 R arginine            2.3          3           2
 S serine              6.9          9           2
 T threonine           3.1          4           1
 V valine              6.1          8           1
 W tryptophan          1.5          2           1
 Y tyrosine            3.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC222166 
LOC441644             0.020   PREDICTED: similar to hCG2041217 
LOC441644             0.020   PREDICTED: similar to hCG2041217 
LOC441644             0.020   PREDICTED: similar to REST corepressor 2 
POLR3G                0.020   polymerase (RNA) III (DNA directed) polypeptide G (...
SMARCA2               0.012   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.012   SWI/SNF-related matrix-associated actin-dependent re...
PYGL                  0.012   liver glycogen phosphorylase 
RANGAP1               0.012   Ran GTPase activating protein 1 
GTF3C3                0.012   general transcription factor IIIC, polypeptide 3, 102...
ZFYVE26               0.008   zinc finger, FYVE domain containing 26 
LRRK1                 0.008   leucine-rich repeat kinase 1 
ZNF212                0.008   zinc finger protein 212 
MCM3                  0.008   minichromosome maintenance complex component 3 
SUV39H2               0.008   suppressor of variegation 3-9 homolog 2 
KCNK10                0.008   potassium channel, subfamily K, member 10 isoform 3 ...
KCNK10                0.008   potassium channel, subfamily K, member 10 isoform 2 ...
KCNK10                0.008   potassium channel, subfamily K, member 10 isoform 1 ...
PPP1R9A               0.008   protein phosphatase 1, regulatory (inhibitor) subuni...
PLA2G4C               0.004   phospholipase A2, group IVC isoform 2 precursor [Ho...
PLA2G4C               0.004   phospholipase A2, group IVC isoform 1 precursor [Ho...
BAZ1B                 0.004   bromodomain adjacent to zinc finger domain, 1B [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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