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Search of human proteins with 169202111
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169202111 PREDICTED: similar to HIG1 domain family, member
2A [Homo sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169202111 PREDICTED: similar to HIG1 domain family, member 2A... 215 7e-57
gi|20270389 HIG1 hypoxia inducible domain family, member 2A [Hom... 97 3e-21
gi|239755597 PREDICTED: similar to HIG1 domain family, member 1A... 33 0.063
gi|239750094 PREDICTED: similar to HIG1 domain family, member 1A... 33 0.063
gi|239744403 PREDICTED: hypothetical protein XP_002343136 [Homo ... 33 0.063
gi|163310741 LIM and calponin homology domains 1 isoform a [Homo... 30 0.31
gi|46447820 differentially expressed in FDCP 8 isoform 1 [Homo s... 29 0.70
gi|151101311 proteome of centriole 5 isoform 1 [Homo sapiens] 28 1.2
gi|151101301 proteome of centriole 5 isoform 2 [Homo sapiens] 28 1.2
gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens] 28 1.6
gi|157817101 HIG1 domain family, member 1C [Homo sapiens] 28 1.6
gi|157384973 tenascin R [Homo sapiens] 28 2.0
gi|153085470 HIG1 domain family, member 1A isoform b [Homo sapiens] 27 2.6
gi|153085461 HIG1 domain family, member 1A isoform a [Homo sapiens] 27 2.6
gi|153085463 HIG1 domain family, member 1A isoform b [Homo sapiens] 27 2.6
gi|28557677 PHD finger protein 6 isoform 1 [Homo sapiens] 27 2.6
gi|62865858 PHD finger protein 6 isoform 1 [Homo sapiens] 27 2.6
gi|148806872 lupus brain antigen 1 [Homo sapiens] 27 2.6
gi|169214254 PREDICTED: transmembrane protein 221 [Homo sapiens] 27 4.5
gi|169213600 PREDICTED: transmembrane protein 221 [Homo sapiens] 27 4.5
gi|4506929 SH3-domain GRB2-like 1 [Homo sapiens] 27 4.5
gi|5032105 small optic lobes [Homo sapiens] 26 5.9
gi|219802034 nuclear factor related to kappaB binding protein is... 26 7.7
gi|23346420 nuclear factor related to kappaB binding protein iso... 26 7.7
gi|210032580 SET domain containing 1B [Homo sapiens] 26 7.7
gi|59709427 XK, Kell blood group complex subunit-related family,... 26 7.7
gi|148596992 heart alpha-kinase [Homo sapiens] 26 7.7
gi|160333411 early B-cell factor 4 [Homo sapiens] 26 7.7
>gi|169202111 PREDICTED: similar to HIG1 domain family, member 2A
[Homo sapiens]
Length = 103
Score = 215 bits (547), Expect = 7e-57
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MVNPSPVTPGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVPIGCLSKAITLT 60
MVNPSPVTPGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVPIGCLSKAITLT
Sbjct: 1 MVNPSPVTPGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVPIGCLSKAITLT 60
Query: 61 YSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWSLDP 103
YSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWSLDP
Sbjct: 61 YSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWSLDP 103
>gi|20270389 HIG1 hypoxia inducible domain family, member 2A [Homo
sapiens]
Length = 106
Score = 97.1 bits (240), Expect = 3e-21
Identities = 56/98 (57%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 1 MVNPSPVTPGAPFELSQPAVIEGFSPTAAIQKVSRKSSFA-KTCKNPTVPIGCLSKAITL 59
M P PV P PFE S+P VIEG SPT S K F KT +NP VPIGCL+ A L
Sbjct: 1 MATPGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAAL 60
Query: 60 TYSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHL 97
TY L Y F++G+SQ QLM RT I QGFTV AILL L
Sbjct: 61 TYGL-YSFHRGNSQRSQLMMRTRIAAQGFTVAAILLGL 97
>gi|239755597 PREDICTED: similar to HIG1 domain family, member 1A
[Homo sapiens]
Length = 124
Score = 32.7 bits (73), Expect = 0.063
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 41 KTCKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWS 100
K + P VP+G A +TY L+ +G++Q + + QGF V A+ + + +S
Sbjct: 54 KAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYS 113
Query: 101 L 101
+
Sbjct: 114 M 114
>gi|239750094 PREDICTED: similar to HIG1 domain family, member 1A
[Homo sapiens]
Length = 124
Score = 32.7 bits (73), Expect = 0.063
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 41 KTCKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWS 100
K + P VP+G A +TY L+ +G++Q + + QGF V A+ + + +S
Sbjct: 54 KAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYS 113
Query: 101 L 101
+
Sbjct: 114 M 114
>gi|239744403 PREDICTED: hypothetical protein XP_002343136 [Homo
sapiens]
Length = 124
Score = 32.7 bits (73), Expect = 0.063
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 41 KTCKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWS 100
K + P VP+G A +TY L+ +G++Q + + QGF V A+ + + +S
Sbjct: 54 KAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYS 113
Query: 101 L 101
+
Sbjct: 114 M 114
>gi|163310741 LIM and calponin homology domains 1 isoform a [Homo
sapiens]
Length = 1083
Score = 30.4 bits (67), Expect = 0.31
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 3 NPSPVTPGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVPIGCLSKAITLTYS 62
+PS +P E Q SPT Q +R S K C + +P+G + I T +
Sbjct: 973 SPSERRKKSPREHFQAGPFSPCSPTPPGQSPNRSISGKKLCSSCGLPLGKGAAMIIETLN 1032
Query: 63 LFYCFYQGHSQCFQ 76
L++ H QCF+
Sbjct: 1033 LYF-----HIQCFR 1041
>gi|46447820 differentially expressed in FDCP 8 isoform 1 [Homo
sapiens]
Length = 512
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 35 RKSSFAKTCKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTRTCITTQ 86
+ S +TC I L I Y+ C+Y+ HS+C L+++ C++++
Sbjct: 206 KSKSVKQTCDKCNTIIWGL---IQTWYTCTGCYYRCHSKCLNLISKPCVSSK 254
>gi|151101311 proteome of centriole 5 isoform 1 [Homo sapiens]
Length = 575
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 4 PSPVTPGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVPIGCLSKAITLT 60
P P+ +P S PA + G S TA S S+ A + + VP+ L T
Sbjct: 407 PMPLPVTSPLLPSPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGSAAT 463
>gi|151101301 proteome of centriole 5 isoform 2 [Homo sapiens]
Length = 550
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 4 PSPVTPGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVPIGCLSKAITLT 60
P P+ +P S PA + G S TA S S+ A + + VP+ L T
Sbjct: 382 PMPLPVTSPLLPSPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGSAAT 438
>gi|69354859 ADAM metallopeptidase domain 8 precursor [Homo sapiens]
Length = 856
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 65 YCFYQGHSQCF---QLMTRTCITTQGFTVTAILLHLLWSLD 102
+CFYQGH + + TC +GF LHL+ LD
Sbjct: 104 HCFYQGHVEGYPDSAASLSTCAGLRGFFQVGSDLHLIEPLD 144
>gi|157817101 HIG1 domain family, member 1C [Homo sapiens]
Length = 97
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 41 KTCKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWS 100
K+ +P VPIG ++ L+ Y+ + + + QGF V A+ L +L+S
Sbjct: 22 KSRDSPFVPIGIAGFVTVVSCGLYKLKYRRDQKMSIHLIHMRVAAQGFVVGAVTLGVLYS 81
Query: 101 L 101
+
Sbjct: 82 M 82
>gi|157384973 tenascin R [Homo sapiens]
Length = 1358
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 39 FAKTCKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTRTCITTQGFTV 90
F K C P P+GC S+ + + C +L T +++G V
Sbjct: 195 FGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTDCSSRGLCV 246
>gi|153085470 HIG1 domain family, member 1A isoform b [Homo sapiens]
Length = 93
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 41 KTCKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWS 100
K + P VP+G A + Y L+ +G+++ + + QGF V A+ + + +S
Sbjct: 23 KAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYS 82
Query: 101 L 101
+
Sbjct: 83 M 83
>gi|153085461 HIG1 domain family, member 1A isoform a [Homo sapiens]
Length = 107
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 41 KTCKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWS 100
K + P VP+G A + Y L+ +G+++ + + QGF V A+ + + +S
Sbjct: 37 KAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYS 96
Query: 101 L 101
+
Sbjct: 97 M 97
>gi|153085463 HIG1 domain family, member 1A isoform b [Homo sapiens]
Length = 93
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 41 KTCKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWS 100
K + P VP+G A + Y L+ +G+++ + + QGF V A+ + + +S
Sbjct: 23 KAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYS 82
Query: 101 L 101
+
Sbjct: 83 M 83
>gi|28557677 PHD finger protein 6 isoform 1 [Homo sapiens]
Length = 365
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 24 FSPTAAIQKVSRKSSFAKT-CKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTR 80
F +Q++ R T C P IGC KA TY ++C Q ++ + M+R
Sbjct: 263 FDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYH-YHCGVQDKAKYIENMSR 319
>gi|62865858 PHD finger protein 6 isoform 1 [Homo sapiens]
Length = 365
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 24 FSPTAAIQKVSRKSSFAKT-CKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTR 80
F +Q++ R T C P IGC KA TY ++C Q ++ + M+R
Sbjct: 263 FDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYH-YHCGVQDKAKYIENMSR 319
>gi|148806872 lupus brain antigen 1 [Homo sapiens]
Length = 2375
Score = 27.3 bits (59), Expect = 2.6
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 10 GAPFELSQPAVIEGFSPTAAIQKVSRKSS------FAKT---CKNPTVPIGCLSKAITLT 60
G FE + A+ + + +KVS K AKT CK PT+ + CLS A
Sbjct: 1175 GGAFEKEKLALAHDTALSMKSKKVSPKEKQLEYLELAKTYLECKEPTLSLKCLSYAKEFQ 1234
Query: 61 YSLFYC----------FYQGHSQCFQ 76
S C ++ SQC++
Sbjct: 1235 LSAQLCERLGKIRDAAYFYKRSQCYK 1260
>gi|169214254 PREDICTED: transmembrane protein 221 [Homo sapiens]
Length = 291
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 9 PGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVPIGCLSKA 56
P +L++PA + SP A Q+ + + TC P P G ++ A
Sbjct: 189 PSFEDDLARPAEVSKASPRAQPQQGIHRRTPYSTCPEPGDPFGSMATA 236
>gi|169213600 PREDICTED: transmembrane protein 221 [Homo sapiens]
Length = 291
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 9 PGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVPIGCLSKA 56
P +L++PA + SP A Q+ + + TC P P G ++ A
Sbjct: 189 PSFEDDLARPAEVSKASPRAQPQQGIHRRTPYSTCPEPGDPFGSMATA 236
>gi|4506929 SH3-domain GRB2-like 1 [Homo sapiens]
Length = 368
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 9 PGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVP 49
P PF+L +P G P K++ SSF + K P
Sbjct: 259 PREPFDLGEPEQSNGGFPCTTAPKIAASSSFRSSDKPIRTP 299
>gi|5032105 small optic lobes [Homo sapiens]
Length = 1086
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 4 PSPVTPGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVP 49
P P PG E + PA +G + +V S F+ T +N VP
Sbjct: 200 PPPGLPGEGAEANPPATSQGPAAEPEPPRVPPFSPFSSTLQNNPVP 245
>gi|219802034 nuclear factor related to kappaB binding protein
isoform 1 [Homo sapiens]
Length = 1299
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 4 PSPVTPGAPFELSQPAVIEGFSPTAAIQK--------VSRKSSFAKTCKNPTVP 49
P+PVTP P + PA+ P +A+ K ++ SS +PT+P
Sbjct: 717 PTPVTPVTPTTPALPAIPISPPPVSAVNKSGPSTVSEPAKSSSGVLLVSSPTMP 770
>gi|23346420 nuclear factor related to kappaB binding protein
isoform 2 [Homo sapiens]
Length = 1324
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 4 PSPVTPGAPFELSQPAVIEGFSPTAAIQK--------VSRKSSFAKTCKNPTVP 49
P+PVTP P + PA+ P +A+ K ++ SS +PT+P
Sbjct: 742 PTPVTPVTPTTPALPAIPISPPPVSAVNKSGPSTVSEPAKSSSGVLLVSSPTMP 795
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 5 SPVTPGAPFELSQPAVIEGFSPTAAIQKVSRKSSFAKTCKNPTVPI 50
SP PG+PF S PA S + R SF T P+ P+
Sbjct: 1357 SPQVPGSPF--SYPAPSPSLSSGGLPRTPGRDFSFTPTFSEPSGPL 1400
>gi|59709427 XK, Kell blood group complex subunit-related family,
member 4 [Homo sapiens]
Length = 650
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 74 CFQLMTRTCITTQGFTVTAILLHLLWSL 101
C + T + QGFT A L+ L W+L
Sbjct: 323 CIIVQTHSLQALQGFTAAASLVSLAWAL 350
>gi|148596992 heart alpha-kinase [Homo sapiens]
Length = 2170
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 28 AAIQKVSRKSSFAKTCKNPTVPIGCLSKAITLTYSL 63
AA+ ++S K+SF C + +V + C S+ L+ +L
Sbjct: 82 AAVYQISAKNSFGMICCSASVEVECSSENPQLSPNL 117
>gi|160333411 early B-cell factor 4 [Homo sapiens]
Length = 598
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 2 VNPSPVTPGAPFELSQPAV-----IEGFSPTAAIQKVSRKSSFAKTCKNPTVP 49
+ PS A +S PA + FSP I V ++S+FA + P+ P
Sbjct: 510 IMPSSPPLAAASSMSLPAAAPTTSVFSFSPVNMISAVKQRSAFAPVLRPPSSP 562
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,195,210
Number of Sequences: 37866
Number of extensions: 153136
Number of successful extensions: 534
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 29
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.