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Search of human proteins with 169194838
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169194838 PREDICTED: translocase of inner mitochondrial
membrane 23 homolog B (yeast) [Homo sapiens]
(61 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169194838 PREDICTED: translocase of inner mitochondrial membr... 130 2e-31
gi|5454122 translocase of inner mitochondrial membrane 23 (yeast... 118 9e-28
gi|239744085 PREDICTED: hypothetical protein XP_002343028 isofor... 118 9e-28
gi|239744083 PREDICTED: hypothetical protein XP_002343027 isofor... 118 9e-28
gi|109255251 loricrin [Homo sapiens] 35 0.017
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 35 0.017
gi|62953127 polyhomeotic 1-like [Homo sapiens] 34 0.022
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 32 0.11
gi|122937424 one cut homeobox 3 [Homo sapiens] 32 0.11
gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens] 31 0.24
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 30 0.32
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 30 0.32
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 30 0.32
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 30 0.54
gi|62422577 neurobeachin [Homo sapiens] 30 0.54
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 29 0.71
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 29 0.71
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 29 0.71
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 29 0.71
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 29 0.71
gi|10864053 myozenin 1 [Homo sapiens] 29 0.93
gi|119395750 keratin 1 [Homo sapiens] 28 1.2
gi|55956899 keratin 9 [Homo sapiens] 28 1.2
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 28 1.2
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 28 1.2
gi|134288906 tripartite motif-containing 67 [Homo sapiens] 28 1.2
gi|117320531 nuclear factor of kappa light polypeptide gene enha... 28 1.6
gi|117320540 nuclear factor of kappa light polypeptide gene enha... 28 1.6
gi|117320527 nuclear factor of kappa light polypeptide gene enha... 28 1.6
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 28 1.6
>gi|169194838 PREDICTED: translocase of inner mitochondrial
membrane 23 homolog B (yeast) [Homo sapiens]
Length = 61
Score = 130 bits (327), Expect = 2e-31
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQVRLRF 60
MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQVRLRF
Sbjct: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQVRLRF 60
Query: 61 Y 61
Y
Sbjct: 61 Y 61
>gi|5454122 translocase of inner mitochondrial membrane 23 (yeast)
homolog [Homo sapiens]
Length = 209
Score = 118 bits (296), Expect = 9e-28
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ 55
MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ
Sbjct: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ 55
>gi|239744085 PREDICTED: hypothetical protein XP_002343028 isoform
2 [Homo sapiens]
Length = 172
Score = 118 bits (296), Expect = 9e-28
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ 55
MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ
Sbjct: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ 55
>gi|239744083 PREDICTED: hypothetical protein XP_002343027 isoform
1 [Homo sapiens]
Length = 209
Score = 118 bits (296), Expect = 9e-28
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ 55
MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ
Sbjct: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQ 55
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 34.7 bits (78), Expect = 0.017
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G + GG GFFG GG+G
Sbjct: 21 GGGGGGGGSGGGGCGFFGGGGSG 43
Score = 29.3 bits (64), Expect = 0.71
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAG 33
GGGGSG ++G G+ +GG GYS G
Sbjct: 38 GGGGSGGGSSGSGCGY--SGGGGYSGGGCGG 66
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYS 27
GGGGS +GG +G F +GG G+S
Sbjct: 132 GGGGS----SGGGSGCFSSGGGGFS 152
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 3 GGGGSG------NKTTGGLAGFFGAGGAGYS 27
GGGGSG ++GG +G F +GG G S
Sbjct: 107 GGGGSGCFSSGGGGSSGGGSGCFSSGGGGSS 137
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYS 27
GGG SG +GG +G F +GG G S
Sbjct: 226 GGGSSGGGGSGG-SGCFSSGGGGGS 249
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 34.7 bits (78), Expect = 0.017
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVD 49
GGGGS T G AG +G GG G G M PL+ NV+
Sbjct: 58 GGGGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVN 104
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 34.3 bits (77), Expect = 0.022
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 2 EGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGM 39
+ GGGSGN G + G GG G +H L +P +GM
Sbjct: 266 QAGGGSGNSIPGSM----GPGGGGQAHGGLGQLPSSGM 299
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQV 56
GG G GN GG AG G GG G S A + + + P LN P + V
Sbjct: 46 GGSGGGNGAGGGGAGGAGGGGGGGSRAPPEELSMFQL----PTLNFSPEQVASV 95
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 1 MEGGGGSGNKTTGGLAGFFGAGGAGYSHADLAGV--PLTGMNPLSPYL 46
++GGGG G GG G AGG +LAG P GM +P L
Sbjct: 54 LDGGGGGGGGGAGGAGGAGSAGGGADFRGELAGPLHPAMGMACEAPGL 101
>gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens]
Length = 269
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLT 37
GG GSG +G G G+GG G+ A A T
Sbjct: 37 GGAGSGGAGSGAAGGTGGSGGGGFGAATFASTSAT 71
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G GG G GAGGAG
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGGAG 277
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGV 34
GGGG G GG G G GGAG A V
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAV 281
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG 38
GGGGSG GG AG GAG + A A G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAG 33
G GG G GG G G GG G + A AG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAG 277
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G GG G GAGGAG
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGGAG 277
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGV 34
GGGG G GG G G GGAG A V
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAV 281
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG 38
GGGGSG GG AG GAG + A A G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAG 33
G GG G GG G G GG G + A AG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAG 277
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G GG G GAGGAG
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGGAG 277
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGV 34
GGGG G GG G G GGAG A V
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAV 281
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG 38
GGGGSG GG AG GAG + A A G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAG 33
G GG G GG G G GG G + A AG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAG 277
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLA 32
GGG SGN G F G GG G SH A
Sbjct: 207 GGGFSGNDNFGHGGNFSGCGGLGGSHGGSA 236
>gi|62422577 neurobeachin [Homo sapiens]
Length = 2946
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 3 GGGGSGNKTTG--GLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVDPRYLVQVRL 58
GGGGSG TG G+ GA G+G +P +NP P N+ ++ V + L
Sbjct: 28 GGGGSGGGGTGGSGMGELRGASGSG-----SVMLPAGMINPSVPIRNIRMKFAVLIGL 80
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLA 32
GGG SGN G F G GG G SH A
Sbjct: 207 GGGFSGNDNFGHGGNFSGCGGFGGSHGGSA 236
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLA 32
GGG SGN G F G GG G SH A
Sbjct: 207 GGGFSGNDNFGHGGNFSGCGGFGGSHGGSA 236
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYL 46
GGGGSG GG G G GG G H L G LS +L
Sbjct: 3509 GGGGSG----GGGGGGGGGGGGGSYHCLACESALCGEEALSQHL 3548
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 29.3 bits (64), Expect = 0.71
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG GN GG GF GG G
Sbjct: 34 GGGGGGNFRGGGRGGFGRGGGRG 56
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 3 GGGGSGNKTTGGLAGFFGAGG--AGYSHADLAGVP 35
GGGG G GG G FG GG G++ G P
Sbjct: 33 GGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPP 67
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGY 26
GGGG G GG G G GG G+
Sbjct: 181 GGGGRGGGRGGGFRGGRGGGGGGF 204
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 29.3 bits (64), Expect = 0.71
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG GN GG GF GG G
Sbjct: 34 GGGGGGNFRGGGRGGFGRGGGRG 56
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 3 GGGGSGNKTTGGLAGFFGAGG--AGYSHADLAGVP 35
GGGG G GG G FG GG G++ G P
Sbjct: 33 GGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPP 67
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGY 26
GGGG G GG G G GG G+
Sbjct: 181 GGGGRGGGRGGGFRGGRGGGGGGF 204
>gi|10864053 myozenin 1 [Homo sapiens]
Length = 299
Score = 28.9 bits (63), Expect = 0.93
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 4 GGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG 38
G GSG TGG AG G GGA A AGV TG
Sbjct: 136 GSGSGAGGTGGPAGQAGRGGA----AGTAGVGETG 166
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAG 33
GGG G GG G FG+GG G+ G
Sbjct: 106 GGGFGGGGIGGGGFGGFGSGGGGFGGGGFGG 136
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 3 GGGGSGNKTTGGLAGFFGAGG 23
GGGG + GG G FGAGG
Sbjct: 40 GGGGGRFSSCGGGGGSFGAGG 60
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 3 GGGGSGNKTTGGLA-----GFFGAGGAGYSH 28
GGGG G+ +GG + G +G+GG G H
Sbjct: 545 GGGGRGSYGSGGSSYGSGGGSYGSGGGGGGH 575
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GG GSG + G G +G+GG G
Sbjct: 523 GGYGSGGSSYGSGGGSYGSGGGG 545
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGY 26
GGGG G + G +G+GG Y
Sbjct: 543 GGGGGGRGSYGSGGSSYGSGGGSY 566
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTG 38
GGG G + L G FG G G+ A G +G
Sbjct: 74 GGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSG 109
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 3 GGGGSGNKTTGGLAGFFGA-GGAGYSHADLAG 33
GG GSG + GG G G+ GG+G SH +G
Sbjct: 560 GGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSG 591
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
G G G ++GG G FG G G
Sbjct: 99 GASGGGYSSSGGFGGGFGGGSGG 121
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 4 GGGSGNKTTGGLAGFFGAGGAGYSHADLAG 33
GG G + GG G +G GG+G + +G
Sbjct: 482 GGSYGRGSRGGSGGSYGGGGSGGGYGGGSG 511
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 3 GGGGSGNKTTGGLAGFFG---AGGAGYSHADLAG 33
GG GSG + GG G G +GG+G H+ +G
Sbjct: 522 GGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSG 555
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 4 GGGSGNKTTGGLAGFFGAGGAGY 26
GGG G + GG G +G+G G+
Sbjct: 112 GGGFGGGSGGGFGGGYGSGFGGF 134
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G GG G G GGAG
Sbjct: 62 GGGGGGGGGGGGGGGGVGGGGAG 84
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G GG+ G GGAG
Sbjct: 66 GGGGGGGGGGGGVGGGGAGGGAG 88
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G GG G G GG G
Sbjct: 60 GGGGGGGGGGGGGGGGGGVGGGG 82
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 3 GGGGSGNKTTGGLAGFFGA--GGAGYS--HADLAGVPLT 37
GGGGSG GG +G GA GG+G+S + G P T
Sbjct: 2295 GGGGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPST 2333
>gi|134288906 tripartite motif-containing 67 [Homo sapiens]
Length = 783
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 5 GGSGNKTTGGLAGFFGAGGAGYSHAD 30
GG+G GGL G GAGG G HAD
Sbjct: 78 GGAGGSAAGGLGG--GAGGGG-DHAD 100
>gi|117320531 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform a [Homo sapiens]
Length = 900
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 4 GGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPL-TGMNPLSPY 45
GGGSG GG G G G G+ + LA P +G P+ Y
Sbjct: 357 GGGSGG-AAGGYGGAGGGGSLGFFPSSLAYSPYQSGAGPMGCY 398
>gi|117320540 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform b [Homo sapiens]
Length = 899
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 4 GGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPL-TGMNPLSPY 45
GGGSG GG G G G G+ + LA P +G P+ Y
Sbjct: 357 GGGSGG-AAGGYGGAGGGGSLGFFPSSLAYSPYQSGAGPMGCY 398
>gi|117320527 nuclear factor of kappa light polypeptide gene
enhancer in B-cells 2 isoform b [Homo sapiens]
Length = 899
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 4 GGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPL-TGMNPLSPY 45
GGGSG GG G G G G+ + LA P +G P+ Y
Sbjct: 357 GGGSGG-AAGGYGGAGGGGSLGFFPSSLAYSPYQSGAGPMGCY 398
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAGYSHADLAGVPLTGMNPLSPYLNVD 49
GGGG G GG G FG GG L G+ GM L N D
Sbjct: 76 GGGGFGGGGGGGGGGSFGGGGP----PGLGGLFQAGMPKLRSTANRD 118
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 3 GGGGSGNKTTGGLAGFFGAGGAG 25
GGGG G GG G G GG G
Sbjct: 68 GGGGGGFGGGGGFGGGGGGGGGG 90
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.144 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,798,117
Number of Sequences: 37866
Number of extensions: 122329
Number of successful extensions: 1600
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 592
length of query: 61
length of database: 18,247,518
effective HSP length: 34
effective length of query: 27
effective length of database: 16,960,074
effective search space: 457921998
effective search space used: 457921998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.