Guide to the Human Genome
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Name: NFKB2 Sequence: fasta or formatted (899aa) NCBI GI: 117320540
Description:

nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 isoform b

Referenced in:

NF-kappaB Pathway

Other entries for this name:
alt mRNA [899aa] nuclear factor of kappa light polypeptide gene enhancer in B-cell...
alt prot [900aa] nuclear factor of kappa light polypeptide gene enhancer in B-cell...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         78           2
 C cysteine            1.3         12           1
 D aspartate           5.2         47           2
 E glutamate           7.0         63           2
 F phenylalanine       2.4         22           2
 G glycine            10.3         93           5
 H histidine           3.2         29           2
 I isoleucine          2.4         22           2
 K lysine              4.2         38           2
 L leucine            11.7        105           3
 M methionine          1.9         17           2
 N asparagine          2.1         19           2
 P proline             7.8         70           3
 Q glutamine           4.8         43           1
 R arginine            5.8         52           2
 S serine              7.3         66           2
 T threonine           5.2         47           2
 V valine              5.6         50           2
 W tryptophan          0.2          2           1
 Y tyrosine            2.7         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear factor of kappa light polypeptide gene enha... 
NFKB2                 1.000   nuclear factor of kappa light polypeptide gene enha...
NFKB2                 0.997   nuclear factor of kappa light polypeptide gene enha...
NFKB1                 0.354   nuclear factor kappa-B, subunit 1 
REL                   0.125   v-rel reticuloendotheliosis viral oncogene homolog [H...
RELA                  0.125   v-rel reticuloendotheliosis viral oncogene homolog ...
RELA                  0.124   v-rel reticuloendotheliosis viral oncogene homolog ...
RELB                  0.110   reticuloendotheliosis viral oncogene homolog B [Homo...
BCL3                  0.069   B-cell CLL/lymphoma 3 
NFKBIE                0.062   nuclear factor of kappa light polypeptide gene enhan...
NFKBIB                0.053   nuclear factor of kappa light polypeptide gene enhan...
NFKBIA                0.050   nuclear factor of kappa light polypeptide gene enhan...
ANK2                  0.049   ankyrin 2 isoform 3 
ANK2                  0.049   ankyrin 2 isoform 2 
ANK2                  0.049   ankyrin 2 isoform 1 
NFKBIB                0.043   nuclear factor of kappa light polypeptide gene enhan...
NFKBID                0.043   nuclear factor of kappa light polypeptide gene enhan...
NFKBIZ                0.043   nuclear factor of kappa light polypeptide gene enhan...
NFKBIZ                0.043   nuclear factor of kappa light polypeptide gene enhan...
TNKS2                 0.040   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
TNKS                  0.038   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANK3                  0.037   ankyrin 3 isoform 1 
MIB1                  0.037   mindbomb homolog 1 
ANK1                  0.036   ankyrin 1 isoform 9 
ANK1                  0.036   ankyrin 1 isoform 1 
ANK1                  0.036   ankyrin 1 isoform 3 
ANK1                  0.036   ankyrin 1 isoform 2 
ANK1                  0.036   ankyrin 1 isoform 4 
ANKK1                 0.036   ankyrin repeat and kinase domain containing 1 
PSMD10                0.035   proteasome 26S non-ATPase subunit 10 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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