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Search of human proteins with 169179422
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169179422 PREDICTED: hypothetical protein [Homo sapiens]
(645 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169179422 PREDICTED: hypothetical protein [Homo sapiens] 1374 0.0
gi|163965366 nascent polypeptide-associated complex alpha subuni... 58 3e-08
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 55 2e-07
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 55 3e-07
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 51 4e-06
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 50 8e-06
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] 49 1e-05
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 49 1e-05
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 49 1e-05
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 49 1e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 49 1e-05
gi|189181750 human immunodeficiency virus type I enhancer bindin... 49 1e-05
gi|116089331 human immunodeficiency virus type I enhancer bindin... 49 1e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 49 2e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 49 2e-05
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 48 3e-05
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 48 3e-05
gi|150170670 piccolo isoform 2 [Homo sapiens] 47 7e-05
gi|150378539 piccolo isoform 1 [Homo sapiens] 47 7e-05
gi|23510413 sorting nexin 26 [Homo sapiens] 47 7e-05
gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens] 46 9e-05
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 46 1e-04
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 46 1e-04
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 46 1e-04
gi|239754641 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-04
gi|239749183 PREDICTED: hypothetical protein XP_002346949 [Homo ... 45 2e-04
gi|239743263 PREDICTED: hypothetical protein XP_002342813 [Homo ... 45 2e-04
gi|239508944 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 45 2e-04
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 45 3e-04
>gi|169179422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 645
Score = 1374 bits (3557), Expect = 0.0
Identities = 645/645 (100%), Positives = 645/645 (100%)
Query: 1 MGPRSPPRSWDDSYVSLGVSGGHTPGAQTHFHLPLCGTMEGTSGRSQKPGHRPPPALQIW 60
MGPRSPPRSWDDSYVSLGVSGGHTPGAQTHFHLPLCGTMEGTSGRSQKPGHRPPPALQIW
Sbjct: 1 MGPRSPPRSWDDSYVSLGVSGGHTPGAQTHFHLPLCGTMEGTSGRSQKPGHRPPPALQIW 60
Query: 61 DEGRAWRSFSNPPDLFTAYRPQPRHLWSQPNACHRPHCSGCSERPVHAGLGRHAEAEAEP 120
DEGRAWRSFSNPPDLFTAYRPQPRHLWSQPNACHRPHCSGCSERPVHAGLGRHAEAEAEP
Sbjct: 61 DEGRAWRSFSNPPDLFTAYRPQPRHLWSQPNACHRPHCSGCSERPVHAGLGRHAEAEAEP 120
Query: 121 FRTALKEWERGSPEPSQLKPSLEKPSTAQWLSRLCSRREQCSAAEEAVGVDSVVLAVEMQ 180
FRTALKEWERGSPEPSQLKPSLEKPSTAQWLSRLCSRREQCSAAEEAVGVDSVVLAVEMQ
Sbjct: 121 FRTALKEWERGSPEPSQLKPSLEKPSTAQWLSRLCSRREQCSAAEEAVGVDSVVLAVEMQ 180
Query: 181 LDLAGSVLSWTGCLKSDLGRGTPQVHGPQCPLPWPEPPAHPAVLWRGECGVNQGPRAPTP 240
LDLAGSVLSWTGCLKSDLGRGTPQVHGPQCPLPWPEPPAHPAVLWRGECGVNQGPRAPTP
Sbjct: 181 LDLAGSVLSWTGCLKSDLGRGTPQVHGPQCPLPWPEPPAHPAVLWRGECGVNQGPRAPTP 240
Query: 241 PGSLAGCWAHLDEVLQQVVGSHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCG 300
PGSLAGCWAHLDEVLQQVVGSHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCG
Sbjct: 241 PGSLAGCWAHLDEVLQQVVGSHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCG 300
Query: 301 GGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLA 360
GGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLA
Sbjct: 301 GGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLA 360
Query: 361 VGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWP 420
VGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWP
Sbjct: 361 VGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWP 420
Query: 421 SCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQG 480
SCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQG
Sbjct: 421 SCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQG 480
Query: 481 CSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAA 540
CSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAA
Sbjct: 481 CSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAA 540
Query: 541 LTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLI 600
LTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLI
Sbjct: 541 LTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLI 600
Query: 601 LLRFPAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAGGDAQQ 645
LLRFPAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAGGDAQQ
Sbjct: 601 LLRFPAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAGGDAQQ 645
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 57.8 bits (138), Expect = 3e-08
Identities = 112/434 (25%), Positives = 136/434 (31%), Gaps = 64/434 (14%)
Query: 207 GPQCPLPW--PEPPAHPAVLWRGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVVGSHPA 264
GP P P P PPA +G GP P+P G+ + PA
Sbjct: 976 GPATPSPKGAPTPPAATPPSPKG------GPATPSPKGA----------------PTPPA 1013
Query: 265 KHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGGPDTLTPNSPS-S 323
P A TP KG + P + T P G + P G P T PS
Sbjct: 1014 VTPPSPKGSPAATPFPKGAST-----PPAATPPSPKGSPAATPLPKGAPTTPAATLPSPK 1068
Query: 324 FLPSSFLLCLLPAPLTAAQPEDAGGRA-PGEEGPPRLAVGLRASSCPIILDPPGKLGTSL 382
P++ L P P A P GG A P +G P PP S
Sbjct: 1069 GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPM---------------PPAATPPSP 1113
Query: 383 PGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWLST 442
G A + T+P+ P SP+ AT P A PA+ PS G +
Sbjct: 1114 KGGLATPPHKGAPTTPAAT--PPSPK-----GGLATPPPKGAPTTPAATPPSPKGGLATP 1166
Query: 443 PPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQ 502
PP P P GL + A + T G T
Sbjct: 1167 PPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPP 1226
Query: 503 KWPG-----VPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSA 557
G P GA T A GG A + +P AA S G A
Sbjct: 1227 SPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGA 1286
Query: 558 PRRPGSATAPR----PLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQ 613
P P T P P P +GA + TPPSP G+ G P PA PP +
Sbjct: 1287 P-NPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSP-GTPPPKGAPTPPAVTPPSPK 1344
Query: 614 ARPAAPQTCAGCPG 627
P P T G
Sbjct: 1345 GTPTLPATTPSSKG 1358
Score = 52.4 bits (124), Expect = 1e-06
Identities = 112/442 (25%), Positives = 141/442 (31%), Gaps = 90/442 (20%)
Query: 207 GPQCPLP-W-PEPPAHPAVLWRGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVVGSHPA 264
GP P P W P PPA +G GP P+P G+ + PA
Sbjct: 953 GPATPSPKWAPTPPAATPPSPKG------GPATPSPKGA----------------PTPPA 990
Query: 265 KHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGG--PDTLTPNSPS 322
P + TP KG P + T P G + P G P TP SP
Sbjct: 991 ATPPS-PKGGPATPSPKG-----APTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPK 1044
Query: 323 SFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSL 382
++ PL P P +G P A + P P K G +
Sbjct: 1045 GSPAAT--------PLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096
Query: 383 PGPGANSSLREGRTSPSRPRL-PQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWLS 441
P P + +P P P SP+ AT P A PA+ PS G +
Sbjct: 1097 PSP---------KGAPMPPAATPPSPK-----GGLATPPHKGAPTTPAATPPSPKGGLAT 1142
Query: 442 TPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTG 501
PP P P GL + A + T G G
Sbjct: 1143 PPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKG-----------------G 1185
Query: 502 QKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRP 561
P P GA T A GG+A S + + AA S G AP P
Sbjct: 1186 LATPS-PKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTP 1244
Query: 562 GSATAPR----PLRVPGRGAQSAEPGTPPSPPGA----EHGGGPGLILLR------FPAA 607
+AT P P P +GA + TPPS G H G P ++ PA
Sbjct: 1245 -AATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPAT 1303
Query: 608 PPPRLQARP--AAPQTCAGCPG 627
PP+ P A P + G PG
Sbjct: 1304 SPPKGAPTPPAATPPSPKGSPG 1325
Score = 45.4 bits (106), Expect = 2e-04
Identities = 86/343 (25%), Positives = 114/343 (33%), Gaps = 92/343 (26%)
Query: 310 SGGPDT-----LTPNSP--SSFLPSSFLLCL--LPAPLTA---AQPEDAGGRAPGEE--- 354
S GPDT +P SP +SFLP + L +P T P G P
Sbjct: 814 SAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPL 873
Query: 355 GPPRLAVGLRASSCPIILDPP-GKLGTSLPGPGANSSLREGRTSPSRPR-------LPQS 406
P + + + + P +++ P K G + P P +L +SP + R +P S
Sbjct: 874 SPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPAS 933
Query: 407 PEHQQV-SACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEW 465
P + + AT PS + PA+ SP W TPP P GP S
Sbjct: 934 PSPKGAPTPPAATPPSPKGG--PATPSPK----WAPTPPAATPPSPKGGPATPS------ 981
Query: 466 RSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGG 525
P GA T A GG
Sbjct: 982 ------------------------------------------PKGAPTPPAATPPSPKGG 999
Query: 526 IAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPG-----RGAQSA 580
A S + +P A S G+ P P +AT P P P +GA +
Sbjct: 1000 PATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTT 1059
Query: 581 EPGTPPSPPGAEHGGGPGLILLRF----PAAPPPRLQARPAAP 619
T PSP GGP L+ PAA PP + PA P
Sbjct: 1060 PAATLPSPK-----GGPATPSLKGAPTPPAATPPSPKGGPATP 1097
Score = 43.1 bits (100), Expect = 8e-04
Identities = 99/388 (25%), Positives = 136/388 (35%), Gaps = 64/388 (16%)
Query: 272 REDACTPEVK---GINMDVCEEPASRTMPYCGGGGGS-QPGVSGGPDTLTPNSPSSFLPS 327
+E TP K ++M +R P G S P + P TP SP P+
Sbjct: 897 KEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGG-PA 955
Query: 328 SFLLCLLPAPLTAAQPEDAGGRA-PGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGPG 386
+ P P A P GG A P +G P + P P K G + P P
Sbjct: 956 TPSPKWAPTPPAATPPSPKGGPATPSPKGAP---------TPPAATPPSPKGGPATPSP- 1005
Query: 387 ANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPY 446
+ +P+ P + +P + S +P A+ PA+ PS G+ +TP P
Sbjct: 1006 --------KGAPTPPAV--TPPSPKGSPAATPFPK-GASTPPAATPPSPKGSPAATPLP- 1053
Query: 447 KPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPG 506
KG PT + L + A +L G + + +GG G
Sbjct: 1054 ---KG--APTTPAATLPSPKGGPATPSL-------KGAPTPPAATPPSPKGGPATPSPKG 1101
Query: 507 VPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATA 566
P+ A GG+A + + AA S G AP P +AT
Sbjct: 1102 APMPP----AATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTP-AATP 1156
Query: 567 PRP----LRVPGRGAQSAEPGTPPSPPGA----EHGGGPGLILLRFPAAPPPRLQ---AR 615
P P P +GA + TPPSP G G P PAA PP + A
Sbjct: 1157 PSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAP-----TTPAATPPSPKGGLAT 1211
Query: 616 PA---APQTCAGCPGAHLEGGRLPDVAG 640
P+ AP T A P + G P G
Sbjct: 1212 PSPKGAPTTPAATPPSPKGGLATPSPKG 1239
Score = 41.2 bits (95), Expect = 0.003
Identities = 97/388 (25%), Positives = 132/388 (34%), Gaps = 69/388 (17%)
Query: 215 PEPPAHPAVLWRGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVVGSHPAKHPLFLARED 274
P PPA +G G APTPP V P P
Sbjct: 1310 PTPPAATPPSPKGSPGTPPPKGAPTPPA---------------VTPPSPKGTPTL----P 1350
Query: 275 ACTPEVKGINMDVCEE----PASRTMPYCGGGGGSQPGVSGGPDTLTP-NSPSSFLPSSF 329
A TP KG + P + T + GG + P GP +P P+S P+
Sbjct: 1351 ATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTS--PAVI 1408
Query: 330 LLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGPGANS 389
L AP T E A + G+ PP + P+ L GP S
Sbjct: 1409 PLSPKKAPATPVTREGAATPSKGDLTPPAVT--------PVSLKKAPATSAPKGGPATPS 1460
Query: 390 SLREGRTSPSRPRL-PQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKP 448
S + P+ P + P SP+ AT S + A PA+ +P G T L P P
Sbjct: 1461 S----KGDPTLPAVTPPSPKEPPAPKQVATSSSPKKA--PATPAPMGAPT-LPAVIPSSP 1513
Query: 449 NKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVP 508
+ P+ R + + L+ +AL+ + +K P +P
Sbjct: 1514 KEVPATPSSRRDPIAPTATLLSKKT---PATLAPKEALIPPAMTVP-----SPKKTPAIP 1565
Query: 509 LGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPG--LVPSAPRRPGSATA 566
++ P A S + SP A + GA P L+P A P A
Sbjct: 1566 T---------PKEAP---ATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEA 1613
Query: 567 PRPLRV----PGRG-AQSAEPGTPPSPP 589
P P V P +G A A GTP SPP
Sbjct: 1614 PTPPAVTPPSPEKGPATPAPKGTPTSPP 1641
Score = 40.8 bits (94), Expect = 0.004
Identities = 52/195 (26%), Positives = 64/195 (32%), Gaps = 23/195 (11%)
Query: 277 TPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGGPDT--LTPNSPSSFLPSSFLLCLL 334
TP KG P S GG + P G P T TP SP P++
Sbjct: 1211 TPSPKGAPTTPAATPPSPK------GGLATPSPKGAPTTPAATPPSPKGG-PATPPPKGA 1263
Query: 335 PAPLTAAQPEDAGGRA-PGEEGPPRLAVGL-------------RASSCPIILDPPGKLGT 380
P P A P GG A P +G P AV + + P PP G+
Sbjct: 1264 PTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGS 1323
Query: 381 SLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWL 440
P + T PS P P S T PS + P + +PS G
Sbjct: 1324 PGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPA 1383
Query: 441 STPPPYKPNKGLKGP 455
TPP K + P
Sbjct: 1384 MTPPSPKRGPAIPSP 1398
Score = 37.4 bits (85), Expect = 0.043
Identities = 43/146 (29%), Positives = 51/146 (34%), Gaps = 19/146 (13%)
Query: 508 PLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAEL----------PGLVPSA 557
P GA T A GG A S + +P AA S G P P +
Sbjct: 936 PKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS 995
Query: 558 PRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPA 617
P+ G P P +GA + TPPSP G+ PAA PP + PA
Sbjct: 996 PK--GGPATPSP-----KGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPA 1048
Query: 618 APQTCAGCPGAHLEGGRLPDVAGGDA 643
A G P LP GG A
Sbjct: 1049 ATPLPKGAPTT--PAATLPSPKGGPA 1072
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 55.5 bits (132), Expect = 2e-07
Identities = 107/423 (25%), Positives = 144/423 (34%), Gaps = 100/423 (23%)
Query: 199 GRGTPQVHGPQCPLPWPEPPAHPAVLWRGECGVNQGPRAPTPPGSLAGC----WAHLDEV 254
G P P P PP G CG P APTP +A + H +
Sbjct: 864 GFSAPAGLSPLLPSSSSSPPP-------GACG---SPSAPTPSAGVAATTIAGFGHFHKA 913
Query: 255 LQQVVGSHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGG-- 312
L + S + PL TP G +P+ + PG GG
Sbjct: 914 LGGSLSSSDS--PLL-------TPLQPGARSPQAAQPSP-----------APPGARGGLG 953
Query: 313 -PDTLTPNSPSSFLPSSF--LLCLLPAPLT---AAQPEDAGGRAPGEEGPPRLAVGLRAS 366
P+ P PSS PSS L P L+ A P P + PP L G
Sbjct: 954 LPEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQPEPPSLVAGASGG 1013
Query: 367 SCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPR-LPQSPEHQQVSACTATWPSCRAA 425
+ P+ P G G S PG SP PR P +P S + P
Sbjct: 1014 ASPVGFTPRG--GLSPPGH-----------SPGPPRTFPSAPPRASGSHGSLLLP----- 1055
Query: 426 ELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQA 485
PAS S PPP P + +G + G L +L ++ Q G
Sbjct: 1056 --PAS----------SPPPPQVPQR--RGTPPLTPGRLTQDLKLISASQPALPQ--DGAQ 1099
Query: 486 LLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSA 545
LR S + +G+ PL R G G+G GG+ R G
Sbjct: 1100 TLRRASPHS-----SGESMAAFPLFPRAGGGSGGSGSSGGLGPPGRPYG----------- 1143
Query: 546 AGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPP--SPPGAEHGGGPGLILLR 603
+PG + PR+ S + P PL + GA++ G PP + P E G P + +
Sbjct: 1144 ---AIPGQHVTLPRKTSSGSLPPPLSL--FGARATSSGGPPLTAGPQREPGARPEPVRSK 1198
Query: 604 FPA 606
P+
Sbjct: 1199 LPS 1201
Score = 30.0 bits (66), Expect = 6.9
Identities = 34/138 (24%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 511 ARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGA------ELPGLVPSAPRRPGSA 564
A T + + HP A + R P + L + AG L L+PSA A
Sbjct: 787 ATTSVAIALTHHPRLPAAIFRP---PPGSGLGNLGAGQTPRHLKRLQSLIPSALGSASPA 843
Query: 565 TAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTCAG 624
++P + P + + S P G +L ++PPP P+AP AG
Sbjct: 844 SSPSQVDTPSSSSFHIQQLAGFSAPA-----GLSPLLPSSSSSPPPGACGSPSAPTPSAG 898
Query: 625 CPGAHLEG-GRLPDVAGG 641
+ G G GG
Sbjct: 899 VAATTIAGFGHFHKALGG 916
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 54.7 bits (130), Expect = 3e-07
Identities = 91/344 (26%), Positives = 117/344 (34%), Gaps = 69/344 (20%)
Query: 300 GGGGGSQPGVSGGPDTLTPNSPSSF-LPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPR 358
G G +PG +G P P P + LP + + P P +P G + GE GP
Sbjct: 259 GPEGIGKPGAAGAPGQ--PGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLK--GERGPAG 314
Query: 359 LAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTAT 418
L G A PGK G L GP N + + P LP P+ + A A
Sbjct: 315 LPGGPGAKGEQGPAGLPGKPG--LTGPPGNMGPQGPKGIPGSHGLP-GPKGETGPAGPAG 371
Query: 419 WPSCRAAE-LPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRT 477
+P + P SD G+ P K N GL GP
Sbjct: 372 YPGAKGERGSPGSDGKPGYPGKPGLDGP-KGNPGLPGP---------------------- 408
Query: 478 GQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSP 537
+G G GG G P P GA+ G P G G+ RG
Sbjct: 409 -KGDPGV------------GGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRG--- 452
Query: 538 WAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAE-HGGG 596
+PG P + PGS P P + +G P PP PPG H G
Sbjct: 453 ------PIGPPGIPGF-PGSKGDPGSPGPPGPAGIATKGLNG--PTGPPGPPGPRGHSGE 503
Query: 597 PGLILLRFPAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAG 640
PGL P P P P A P ++ G+ P ++G
Sbjct: 504 PGL-----PGPP------GPPGPPGQAVMPEGFIKAGQRPSLSG 536
Score = 47.4 bits (111), Expect = 4e-05
Identities = 88/305 (28%), Positives = 103/305 (33%), Gaps = 49/305 (16%)
Query: 339 TAAQPEDAGGRA-PGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTS 397
T P AG R PG GPP G P + PG LPGP S++ +
Sbjct: 61 TPGPPGPAGPRGHPGPSGPP----GKPGYGSPGLQGEPG-----LPGPPGPSAVGK---- 107
Query: 398 PSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPP----------PYK 447
P P LP P + A LP P G PP P K
Sbjct: 108 PGVPGLPGKPGERGPYGPKG---DVGPAGLPGPRGPPG-------PPGIPGPAGISVPGK 157
Query: 448 PNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGV 507
P G +GPT G + + G +GQ G R G G P
Sbjct: 158 P--GQQGPTGAP-GPRGFPGEKGAPGV----PGMNGQKG-EMGYGAPGRPGERGLPGPQG 209
Query: 508 PLGARTGLGAGVRQHPG--GIAGLSRERGHSPWAALTDSAAGAELPG-LVPSAPRRPGSA 564
P G G G R G G G+ +RG PG P +PG+A
Sbjct: 210 PTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAA 269
Query: 565 TAPRPLRVPGRGAQSAEPGT--PPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTC 622
AP +PG PG PP PPG G PGL R PA P A+ Q
Sbjct: 270 GAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAK--GEQGP 327
Query: 623 AGCPG 627
AG PG
Sbjct: 328 AGLPG 332
Score = 40.8 bits (94), Expect = 0.004
Identities = 113/449 (25%), Positives = 139/449 (30%), Gaps = 142/449 (31%)
Query: 200 RGTPQVHGPQCPLPWPEPPAHPAVLWRGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVV 259
+GTP GP P P P P G G+ P P PPG A V
Sbjct: 59 QGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSA-------------V 105
Query: 260 GSHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGGPDTLTPN 319
G P V G+ +P R PY G G +G P P
Sbjct: 106 GK----------------PGVPGLP----GKPGERG-PY---GPKGDVGPAGLPGPRGPP 141
Query: 320 SPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAP-GEEGPPRLAVGLRASSCPIILDPPGKL 378
P +P P + P G + P G GP A P + G++
Sbjct: 142 GPPG----------IPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEM 191
Query: 379 GTSLPG-PGANSSLREGRTSPSRPRLPQSPE--HQQVSACTATWPSCRAAE-LPASDSPS 434
G PG PG G P P P P ++ P + P P
Sbjct: 192 GYGAPGRPG-----ERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPI 246
Query: 435 GWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRT 494
G PP + G +GP G G G A
Sbjct: 247 G-------PPGPQGPPGERGP---------------------EGIGKPGAA--------- 269
Query: 495 LRGGGTGQKWPGVPLGARTGLGA-GVRQHPG-------GIAGLSRERGHSPWAALTDSAA 546
G GQ PG+P G + GA G+ PG G+ GL ERG
Sbjct: 270 ---GAPGQ--PGIP-GTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERG------------ 311
Query: 547 GAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGT--PPSPPGAEHGGGPGLILLRF 604
A LPG PG+ P +PG+ + PG P P G G GL
Sbjct: 312 PAGLPG-------GPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIP--GSHGL----- 357
Query: 605 PAAPPPRLQARPAAPQTCAGCPGAHLEGG 633
P P+ + PA P AG PGA E G
Sbjct: 358 ---PGPKGETGPAGP---AGYPGAKGERG 380
Score = 29.6 bits (65), Expect = 9.0
Identities = 25/73 (34%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 562 GSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLI-LLRFPAAPPPRLQARPAAPQ 620
G P P PG PG P PPG G PGL P P P +P P
Sbjct: 57 GEQGTPGP---PGPAGPRGHPG-PSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVP- 111
Query: 621 TCAGCPGAHLEGG 633
G PG E G
Sbjct: 112 ---GLPGKPGERG 121
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 50.8 bits (120), Expect = 4e-06
Identities = 90/347 (25%), Positives = 110/347 (31%), Gaps = 77/347 (22%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFL--PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRL 359
G QPG+ G P T P P P + L P P+ GG PG+ GPP
Sbjct: 1113 GAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPV-------GGGGHPGQPGPPGE 1165
Query: 360 AVGLRASSCPIILDP---PGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACT 416
P PG+ G PGP L + P +P +P
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPG-------- 1217
Query: 417 ATWPSCRAAELPASDSPSGW----GTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACS 472
LP G+ G PP P L+GP
Sbjct: 1218 ----------LPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNP------------- 1254
Query: 473 NLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGA-GVRQHPG--GIAGL 529
QG G R G G P P G G G + +PG G+ GL
Sbjct: 1255 ----GPQGPPG------------RPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGL 1298
Query: 530 SRERGHSPWAALTDSAAGAELPGLV--PSAPRRPGSATAPRPLRVPGRGAQSAEPGT--P 585
+G L + L G+ P P PG P VPG EPG P
Sbjct: 1299 PGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGP 1358
Query: 586 PSPPGAEHGGGPGLILLRFPAAPP-----PRLQARPAAPQTCAGCPG 627
P PPG G I+++ A PP P L+ P PQ G PG
Sbjct: 1359 PGPPGLPGPSGQS-IIIKGDAGPPGIPGQPGLKGLP-GPQGPQGLPG 1403
Score = 43.5 bits (101), Expect = 6e-04
Identities = 94/365 (25%), Positives = 112/365 (30%), Gaps = 90/365 (24%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSF-------LPS----SFLLCLLPAPLTAAQPEDAGGRA 350
G +PG+ G P + PN S LP S P QP +G
Sbjct: 941 GSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSG--Q 998
Query: 351 PGEEGPPRLAVGLRASSCPIILDPPGKLGT----SLPGPGANSSLREGRTSPSRPRLPQS 406
PG GPP P ++ PPG GT PGP P +P P
Sbjct: 999 PGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGL 1058
Query: 407 PEHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWR 466
P + P + LP P G P Y N G+KG S+G
Sbjct: 1059 PGQKGDKGD----PGISSIGLPGLPGPKGEPGL----PGYPGNPGIKG----SVG----- 1101
Query: 467 SRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGI 526
G G L G + PG+P G P G
Sbjct: 1102 -----------DPGLPG-----------LPGTPGAKGQPGLP-------GFPGTPGPPGP 1132
Query: 527 AGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTP- 585
G+S G+ G PG P PG P +PG Q EPG P
Sbjct: 1133 KGISGPPGNPGLPGEPGPVGGGGHPG----QPGPPGEKGKPGQDGIPGPAGQKGEPGQPG 1188
Query: 586 ---PSPPG-----AEHGGG-----PGLILLRFPAAPP-----PRLQARPAAPQTCAGCPG 627
P PPG + G G PG L P P P +Q P P G PG
Sbjct: 1189 FGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPP----GSPG 1244
Query: 628 AHLEG 632
LEG
Sbjct: 1245 PALEG 1249
Score = 40.8 bits (94), Expect = 0.004
Identities = 119/472 (25%), Positives = 153/472 (32%), Gaps = 70/472 (14%)
Query: 201 GTPQVHGPQCPLPWPEPPAHPAVLWRGECGVN-----QGPRAPTPPGSLAGCWAHLDEVL 255
G P + GP P P P + + ++G G QGP P PPG ++ +D
Sbjct: 198 GPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGP--PGPPGQISEQKRPIDVEF 255
Query: 256 QQ----VVGSHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSG 311
Q+ + G P + KG + EP R P G G QPG+ G
Sbjct: 256 QKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQ-GEPGKRGKPGKDGENG-QPGIPG 313
Query: 312 GP-------------------DTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRA-- 350
P DT P P +P + P G +
Sbjct: 314 LPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGER 373
Query: 351 --PGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSP- 407
PG +GPP GL ++ PPG G PG ++G P +P P
Sbjct: 374 GFPGIQGPP----GLPGPPGAAVMGPPGPPGF----PGERG--QKGDEGPPGISIPGPPG 423
Query: 408 -EHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWR 466
+ Q + P +P SD G PP +KGL+G ++
Sbjct: 424 LDGQPGAPGLPGPPGPAGPHIPPSDEICEPGP--PGPPGSPGDKGLQGEQG-----VKGD 476
Query: 467 SRLACSNLLRTG-QGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGA-GVRQHPG 524
C N + TG G GQ L G GQK GA G G+ PG
Sbjct: 477 KGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPG 536
Query: 525 GIAGLSRERGHSPWAALTDSAAGAELPGL-VPSAPRRPGSATAPRPLRVPGRGAQSAEPG 583
G +G P LT + L P AP PG P +PG EPG
Sbjct: 537 A-PGFPGSKGE-PGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPG 594
Query: 584 --------TPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTCAGCPG 627
PP PG G PG I P P Q AG PG
Sbjct: 595 GITFKGERGPPGNPGLP--GLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPG 644
Score = 40.8 bits (94), Expect = 0.004
Identities = 96/368 (26%), Positives = 121/368 (32%), Gaps = 69/368 (18%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLA- 360
G PG+ G P + P + P P P G PG+ G P L
Sbjct: 1006 GPKGNPGLPGQPGLIGPPGLKGTIGDMGF----PGPQGVEGPPGPSG-VPGQPGSPGLPG 1060
Query: 361 -------VGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVS 413
G+ + P + P G+ G LPG N ++ P P LP +P +
Sbjct: 1061 QKGDKGDPGISSIGLPGLPGPKGEPG--LPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQP 1118
Query: 414 AC-----TATWPSCRAAE-------LPASDSPSGWGTWLSTP-PPYKPNK----GLKGPT 456
T P + LP P G G P PP + K G+ GP
Sbjct: 1119 GLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPA 1178
Query: 457 RRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLG 516
+ + G G G L S + GG PG+P GL
Sbjct: 1179 GQK------------GEPGQPGFGNPGPPGLPGLSGQKGDGG-----LPGIP--GNPGL- 1218
Query: 517 AGVRQHPG--GIAGLSRERGH--SPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRV 572
G + PG G G+ G SP AL + G P P P G P +
Sbjct: 1219 PGPKGEPGFHGFPGVQGPPGPPGSPGPAL-EGPKGNPGPQGPPGRPGFQGLPGPEGPPGL 1277
Query: 573 PGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTCAGCPGAHLEG 632
PG G E G P P G PGL L+ PP LQ P P G G +
Sbjct: 1278 PGNGGIKGEKGNPGQP------GLPGLPGLKGDQG-PPGLQGNPGRP----GLNGMKGDP 1326
Query: 633 GRLPDVAG 640
G LP V G
Sbjct: 1327 G-LPGVPG 1333
Score = 37.7 bits (86), Expect = 0.033
Identities = 119/458 (25%), Positives = 148/458 (32%), Gaps = 91/458 (19%)
Query: 226 RGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVVGSHPAKHPLFLAREDACTPEVKGINM 285
RG G+ P P PPG+ V+G P P F P +G
Sbjct: 373 RGFPGIQGPPGLPGPPGAA-------------VMG--PPGPPGF--------PGERGQKG 409
Query: 286 DVCEEPASRTMPYCGGGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPED 345
D E P ++P G G QPG G P P P +P S +C P P D
Sbjct: 410 D--EGPPGISIPGPPGLDG-QPGAPGLPGPPGPAGPH--IPPSDEICEPGPPGPPGSPGD 464
Query: 346 AGGRAPGEEGPPRLAVGLRASSC-----PIILDPPGKLGT-SLPGPGANSSL-------- 391
G GE+G G + +C I PPG+ G LPGP +
Sbjct: 465 KG--LQGEQG----VKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKG 518
Query: 392 REGRTSPS-------RPRLPQSPEHQQVSACTATWPSCRA--AELPASDSPSGWGTWLST 442
+ G T P P P P + T+P + EL + +P G L
Sbjct: 519 QAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPG--LPG 576
Query: 443 PPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTG-------QGCSGQALLRCGSNRTL 495
P GL GP G+ R N G G G + +
Sbjct: 577 TPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGI 636
Query: 496 RGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGL-- 553
+G PG+P G + G + Q G GL G L PGL
Sbjct: 637 QGVAGNPGQPGIP-GPKGDPGQTITQP--GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG 693
Query: 554 VPSAPRRPGSATA-----PRPLRVPGRGAQSAEPGTP--------PSPPGAEHGGG-PGL 599
+P + PG P P PG PGTP P PPG G PG
Sbjct: 694 IPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGF 753
Query: 600 ILLRFPAAP-PPRLQARPAA--PQTCAGCPGAHLEGGR 634
L P P PP L A P+ G PG GR
Sbjct: 754 AL---PGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGR 788
Score = 37.7 bits (86), Expect = 0.033
Identities = 88/365 (24%), Positives = 114/365 (31%), Gaps = 68/365 (18%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFL-----PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGP 356
G PG+ G L P F P L LP P P PG GP
Sbjct: 757 GPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQ----PGPMGP 812
Query: 357 PRL-AVGLRASSCPIILDPPGKLGTSLPGPGANSSLR-----EGRTSPSRPRLPQSPEHQ 410
P L +G++ PPG G +PGP L +G P +P P +
Sbjct: 813 PGLPGIGVQG--------PPGPPG--IPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER 862
Query: 411 Q---VSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRS 467
+ + LP SG+ P K G+ GP G L
Sbjct: 863 GSPGIPGAPGPIGPPGSPGLPGKAGASGF-------PGTKGEMGMMGPPGPP-GPLGIPG 914
Query: 468 RLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPG--G 525
R L + G GQ L + G G P P+ G + PG G
Sbjct: 915 RSGVPGL-KGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPG 973
Query: 526 IAGLSRERGHSPWAALTDSAAGAELPGLV--------PSAPRRPG------------SAT 565
I G+S +G+ + PGL P P +PG
Sbjct: 974 IPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMG 1033
Query: 566 APRPLRV---PGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTC 622
P P V PG +PG+P P G PG+ + P P P+ P P
Sbjct: 1034 FPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPK--GEPGLP--- 1088
Query: 623 AGCPG 627
G PG
Sbjct: 1089 -GYPG 1092
Score = 35.4 bits (80), Expect = 0.16
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 550 LPGL--VPSAPRRPGSATAPRPLRVPGRGAQSAE---PGT--------PPSPPGAE-HGG 595
LPG P P PG AP P +PG E PG+ PP PPG G
Sbjct: 97 LPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKG 156
Query: 596 GPGLILLRFPAAPPPRLQARPAAPQTCAGCPG 627
PG I++ + P P+ P G PG
Sbjct: 157 EPGSIIM--SSLPGPKGNPGYPGPPGIQGLPG 186
Score = 34.7 bits (78), Expect = 0.28
Identities = 115/457 (25%), Positives = 147/457 (32%), Gaps = 96/457 (21%)
Query: 207 GPQCPLPWPEPPAHPAVLW-------RGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVV 259
GP+ +P PP P +G+ G N P PPG L G +
Sbjct: 772 GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG-LPGIGVQGPPGPPGIP 830
Query: 260 G--SHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGGPDTLT 317
G P H + + D P +DV P R P G G G G P
Sbjct: 831 GPIGQPGLHGIPGEKGDPGPP-----GLDVPGPPGERGSPGIPGAPGPI-GPPGSPGLPG 884
Query: 318 PNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGK 377
S F + + ++ P P G PG G P L P + P G+
Sbjct: 885 KAGASGFPGTKGEMGMMGPP---GPPGPLG--IPGRSGVPGLKGDDGLQGQPGLPGPTGE 939
Query: 378 LGTS----LPGPGA--NSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASD 431
G+ LPGP + +L + P LP P LP
Sbjct: 940 KGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQG---------LPGDP 990
Query: 432 SPSGWG--TWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRC 489
G L PP K N GL G GL+ G G
Sbjct: 991 GQPGLSGQPGLPGPPGPKGNPGLPGQP----GLI----------------GPPG------ 1024
Query: 490 GSNRTLRGGGTGQKWPGVPLGARTGLG-AGVRQHPG--GIAGLSRERGHSPWAALTDSAA 546
L+G +PG P G G +GV PG G+ G ++G +++
Sbjct: 1025 -----LKGTIGDMGFPG-PQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIG---- 1074
Query: 547 GAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTP--PSPPGAEHGGGPGLILLRF 604
LPGL P PG P PG +PG P P PGA+ G PG L F
Sbjct: 1075 ---LPGL-PGPKGEPGLPGYPGN---PGIKGSVGDPGLPGLPGTPGAK--GQPG--LPGF 1123
Query: 605 PAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAGG 641
P P P P+ +G PG G V GG
Sbjct: 1124 PGTP------GPPGPKGISGPPGNPGLPGEPGPVGGG 1154
Score = 33.1 bits (74), Expect = 0.81
Identities = 37/125 (29%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 523 PGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEP 582
P GI G+ E G ++L PG P PG P P+ PG P
Sbjct: 148 PPGIPGMKGEPGSIIMSSLPGPKGNPGYPG-PPGIQGLPGPTGIPGPIGPPGPPGLMGPP 206
Query: 583 GTPPSPPGAEHG---------GGPGLILLRFPAAPPPRL--QARPAAPQTCAGCPGAHLE 631
G PP PG + G G L+ P PP ++ Q RP + G G L
Sbjct: 207 G-PPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQG--LP 263
Query: 632 GGRLP 636
G R P
Sbjct: 264 GDRGP 268
Score = 31.2 bits (69), Expect = 3.1
Identities = 27/82 (32%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 555 PSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPP-PRLQ 613
P PG P P PG Q + G P P G PG L FP P P +
Sbjct: 53 PGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPG--LPGFPGTPGLPGMP 110
Query: 614 ARPAA--PQTCAGCPGAHLEGG 633
A PQ GC G E G
Sbjct: 111 GHDGAPGPQGIPGCNGTKGERG 132
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 49.7 bits (117), Expect = 8e-06
Identities = 93/350 (26%), Positives = 113/350 (32%), Gaps = 80/350 (22%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFL--PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRL 359
G QPG+ G P T P P P + L P P+ GG PG+ GPP
Sbjct: 1113 GAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPV-------GGGGHPGQPGPPGE 1165
Query: 360 AVGLRASSCPIILDP---PGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACT 416
P PG+ G PGP L + P +P +P
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPG-------- 1217
Query: 417 ATWPSCRAAELPASDSPSGW----GTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACS 472
LP G+ G PP P L+GP
Sbjct: 1218 ----------LPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNP------------- 1254
Query: 473 NLLRTGQGCSGQALLRCGSNRTLRGGGTG-QKWPGV--PLGARTGLGA-GVRQHPG--GI 526
QG G R G TG Q PG P G G G + +PG G+
Sbjct: 1255 ----GPQGPPG------------RPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGL 1298
Query: 527 AGLSRERGHSPWAALTDSAAGAELPGLV--PSAPRRPGSATAPRPLRVPGRGAQSAEPGT 584
GL +G L + L G+ P P PG P VPG EPG
Sbjct: 1299 PGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGL 1358
Query: 585 --PPSPPGAEHGGGPGLILLRFPAAPP-----PRLQARPAAPQTCAGCPG 627
PP PPG G I+++ A PP P L+ P PQ G PG
Sbjct: 1359 IGPPGPPGLPGPSGQS-IIIKGDAGPPGIPGQPGLKGLP-GPQGPQGLPG 1406
Score = 43.5 bits (101), Expect = 6e-04
Identities = 94/365 (25%), Positives = 112/365 (30%), Gaps = 90/365 (24%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSF-------LPS----SFLLCLLPAPLTAAQPEDAGGRA 350
G +PG+ G P + PN S LP S P QP +G
Sbjct: 941 GSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSG--Q 998
Query: 351 PGEEGPPRLAVGLRASSCPIILDPPGKLGT----SLPGPGANSSLREGRTSPSRPRLPQS 406
PG GPP P ++ PPG GT PGP P +P P
Sbjct: 999 PGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGL 1058
Query: 407 PEHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWR 466
P + P + LP P G P Y N G+KG S+G
Sbjct: 1059 PGQKGDKGD----PGISSIGLPGLPGPKGEPGL----PGYPGNPGIKG----SVG----- 1101
Query: 467 SRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGI 526
G G L G + PG+P G P G
Sbjct: 1102 -----------DPGLPG-----------LPGTPGAKGQPGLP-------GFPGTPGPPGP 1132
Query: 527 AGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTP- 585
G+S G+ G PG P PG P +PG Q EPG P
Sbjct: 1133 KGISGPPGNPGLPGEPGPVGGGGHPG----QPGPPGEKGKPGQDGIPGPAGQKGEPGQPG 1188
Query: 586 ---PSPPG-----AEHGGG-----PGLILLRFPAAPP-----PRLQARPAAPQTCAGCPG 627
P PPG + G G PG L P P P +Q P P G PG
Sbjct: 1189 FGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPP----GSPG 1244
Query: 628 AHLEG 632
LEG
Sbjct: 1245 PALEG 1249
Score = 40.8 bits (94), Expect = 0.004
Identities = 119/472 (25%), Positives = 153/472 (32%), Gaps = 70/472 (14%)
Query: 201 GTPQVHGPQCPLPWPEPPAHPAVLWRGECGVN-----QGPRAPTPPGSLAGCWAHLDEVL 255
G P + GP P P P + + ++G G QGP P PPG ++ +D
Sbjct: 198 GPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGP--PGPPGQISEQKRPIDVEF 255
Query: 256 QQ----VVGSHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSG 311
Q+ + G P + KG + EP R P G G QPG+ G
Sbjct: 256 QKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQ-GEPGKRGKPGKDGENG-QPGIPG 313
Query: 312 GP-------------------DTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRA-- 350
P DT P P +P + P G +
Sbjct: 314 LPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGER 373
Query: 351 --PGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSP- 407
PG +GPP GL ++ PPG G PG ++G P +P P
Sbjct: 374 GFPGIQGPP----GLPGPPGAAVMGPPGPPGF----PGERG--QKGDEGPPGISIPGPPG 423
Query: 408 -EHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWR 466
+ Q + P +P SD G PP +KGL+G ++
Sbjct: 424 LDGQPGAPGLPGPPGPAGPHIPPSDEICEPGP--PGPPGSPGDKGLQGEQG-----VKGD 476
Query: 467 SRLACSNLLRTG-QGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGA-GVRQHPG 524
C N + TG G GQ L G GQK GA G G+ PG
Sbjct: 477 KGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPG 536
Query: 525 GIAGLSRERGHSPWAALTDSAAGAELPGL-VPSAPRRPGSATAPRPLRVPGRGAQSAEPG 583
G +G P LT + L P AP PG P +PG EPG
Sbjct: 537 A-PGFPGSKGE-PGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPG 594
Query: 584 --------TPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTCAGCPG 627
PP PG G PG I P P Q AG PG
Sbjct: 595 GITFKGERGPPGNPGLP--GLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPG 644
Score = 37.7 bits (86), Expect = 0.033
Identities = 119/458 (25%), Positives = 148/458 (32%), Gaps = 91/458 (19%)
Query: 226 RGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVVGSHPAKHPLFLAREDACTPEVKGINM 285
RG G+ P P PPG+ V+G P P F P +G
Sbjct: 373 RGFPGIQGPPGLPGPPGAA-------------VMG--PPGPPGF--------PGERGQKG 409
Query: 286 DVCEEPASRTMPYCGGGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPED 345
D E P ++P G G QPG G P P P +P S +C P P D
Sbjct: 410 D--EGPPGISIPGPPGLDG-QPGAPGLPGPPGPAGPH--IPPSDEICEPGPPGPPGSPGD 464
Query: 346 AGGRAPGEEGPPRLAVGLRASSC-----PIILDPPGKLGT-SLPGPGANSSL-------- 391
G GE+G G + +C I PPG+ G LPGP +
Sbjct: 465 KG--LQGEQG----VKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKG 518
Query: 392 REGRTSPS-------RPRLPQSPEHQQVSACTATWPSCRA--AELPASDSPSGWGTWLST 442
+ G T P P P P + T+P + EL + +P G L
Sbjct: 519 QAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPG--LPG 576
Query: 443 PPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTG-------QGCSGQALLRCGSNRTL 495
P GL GP G+ R N G G G + +
Sbjct: 577 TPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGI 636
Query: 496 RGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGL-- 553
+G PG+P G + G + Q G GL G L PGL
Sbjct: 637 QGVAGNPGQPGIP-GPKGDPGQTITQP--GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG 693
Query: 554 VPSAPRRPGSATA-----PRPLRVPGRGAQSAEPGTP--------PSPPGAEHGGG-PGL 599
+P + PG P P PG PGTP P PPG G PG
Sbjct: 694 IPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGF 753
Query: 600 ILLRFPAAP-PPRLQARPAA--PQTCAGCPGAHLEGGR 634
L P P PP L A P+ G PG GR
Sbjct: 754 AL---PGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGR 788
Score = 37.7 bits (86), Expect = 0.033
Identities = 88/365 (24%), Positives = 114/365 (31%), Gaps = 68/365 (18%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFL-----PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGP 356
G PG+ G L P F P L LP P P PG GP
Sbjct: 757 GPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQ----PGPMGP 812
Query: 357 PRL-AVGLRASSCPIILDPPGKLGTSLPGPGANSSLR-----EGRTSPSRPRLPQSPEHQ 410
P L +G++ PPG G +PGP L +G P +P P +
Sbjct: 813 PGLPGIGVQG--------PPGPPG--IPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER 862
Query: 411 Q---VSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRS 467
+ + LP SG+ P K G+ GP G L
Sbjct: 863 GSPGIPGAPGPIGPPGSPGLPGKAGASGF-------PGTKGEMGMMGPPGPP-GPLGIPG 914
Query: 468 RLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPG--G 525
R L + G GQ L + G G P P+ G + PG G
Sbjct: 915 RSGVPGL-KGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPG 973
Query: 526 IAGLSRERGHSPWAALTDSAAGAELPGLV--------PSAPRRPG------------SAT 565
I G+S +G+ + PGL P P +PG
Sbjct: 974 IPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMG 1033
Query: 566 APRPLRV---PGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTC 622
P P V PG +PG+P P G PG+ + P P P+ P P
Sbjct: 1034 FPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPK--GEPGLP--- 1088
Query: 623 AGCPG 627
G PG
Sbjct: 1089 -GYPG 1092
Score = 35.4 bits (80), Expect = 0.16
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 550 LPGL--VPSAPRRPGSATAPRPLRVPGRGAQSAE---PGT--------PPSPPGAE-HGG 595
LPG P P PG AP P +PG E PG+ PP PPG G
Sbjct: 97 LPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKG 156
Query: 596 GPGLILLRFPAAPPPRLQARPAAPQTCAGCPG 627
PG I++ + P P+ P G PG
Sbjct: 157 EPGSIIM--SSLPGPKGNPGYPGPPGIQGLPG 186
Score = 34.7 bits (78), Expect = 0.28
Identities = 115/457 (25%), Positives = 147/457 (32%), Gaps = 96/457 (21%)
Query: 207 GPQCPLPWPEPPAHPAVLW-------RGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVV 259
GP+ +P PP P +G+ G N P PPG L G +
Sbjct: 772 GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG-LPGIGVQGPPGPPGIP 830
Query: 260 G--SHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGGPDTLT 317
G P H + + D P +DV P R P G G G G P
Sbjct: 831 GPIGQPGLHGIPGEKGDPGPP-----GLDVPGPPGERGSPGIPGAPGPI-GPPGSPGLPG 884
Query: 318 PNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGK 377
S F + + ++ P P G PG G P L P + P G+
Sbjct: 885 KAGASGFPGTKGEMGMMGPP---GPPGPLG--IPGRSGVPGLKGDDGLQGQPGLPGPTGE 939
Query: 378 LGTS----LPGPGA--NSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASD 431
G+ LPGP + +L + P LP P LP
Sbjct: 940 KGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQG---------LPGDP 990
Query: 432 SPSGWG--TWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRC 489
G L PP K N GL G GL+ G G
Sbjct: 991 GQPGLSGQPGLPGPPGPKGNPGLPGQP----GLI----------------GPPG------ 1024
Query: 490 GSNRTLRGGGTGQKWPGVPLGARTGLG-AGVRQHPG--GIAGLSRERGHSPWAALTDSAA 546
L+G +PG P G G +GV PG G+ G ++G +++
Sbjct: 1025 -----LKGTIGDMGFPG-PQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIG---- 1074
Query: 547 GAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTP--PSPPGAEHGGGPGLILLRF 604
LPGL P PG P PG +PG P P PGA+ G PG L F
Sbjct: 1075 ---LPGL-PGPKGEPGLPGYPGN---PGIKGSVGDPGLPGLPGTPGAK--GQPG--LPGF 1123
Query: 605 PAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAGG 641
P P P P+ +G PG G V GG
Sbjct: 1124 PGTP------GPPGPKGISGPPGNPGLPGEPGPVGGG 1154
Score = 33.1 bits (74), Expect = 0.81
Identities = 37/125 (29%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 523 PGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEP 582
P GI G+ E G ++L PG P PG P P+ PG P
Sbjct: 148 PPGIPGMKGEPGSIIMSSLPGPKGNPGYPG-PPGIQGLPGPTGIPGPIGPPGPPGLMGPP 206
Query: 583 GTPPSPPGAEHG---------GGPGLILLRFPAAPPPRL--QARPAAPQTCAGCPGAHLE 631
G PP PG + G G L+ P PP ++ Q RP + G G L
Sbjct: 207 G-PPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQG--LP 263
Query: 632 GGRLP 636
G R P
Sbjct: 264 GDRGP 268
Score = 31.2 bits (69), Expect = 3.1
Identities = 27/82 (32%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 555 PSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPP-PRLQ 613
P PG P P PG Q + G P P G PG L FP P P +
Sbjct: 53 PGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPG--LPGFPGTPGLPGMP 110
Query: 614 ARPAA--PQTCAGCPGAHLEGG 633
A PQ GC G E G
Sbjct: 111 GHDGAPGPQGIPGCNGTKGERG 132
>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
Length = 1950
Score = 49.3 bits (116), Expect = 1e-05
Identities = 76/323 (23%), Positives = 100/323 (30%), Gaps = 47/323 (14%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAP-LTAAQPEDAGGRAPGEEGPPRLA 360
G G +GG D T + S P ++ A P GG PGE GP
Sbjct: 1584 GASGMAGTTGGVDAATTGAASENTSER-----AGTPRVSGATPAVGGGSTPGEAGPGATV 1638
Query: 361 VGLRASSCPIILDPPGKLGTSLPG--PGANSSLREGRTSPSRPRLPQSPEHQQVSACTAT 418
G S I PG TS G G+T + S V+ +
Sbjct: 1639 SGSTGVSAGSITASPGASATSSESSKSGTTGPSVGGKTGATSSEATSSEGMSGVTGQSLG 1698
Query: 419 WPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTG 478
+ +E+ A S +G S+PP P S G EW +
Sbjct: 1699 STAGSDSEITAKTSFTG-----SSPPGKLTRPSPGSPGHFSGGTTEWGNVATTGAAGENT 1753
Query: 479 QGCSG------QALLRCGSNRTLRGGGTGQKWPG---------VPLGARTGLGAGVRQHP 523
G G +A GS T GTG PG V GA G
Sbjct: 1754 SGALGSTEGSVEATTSAGSGNTAGTSGTGDTGPGNTAVSGTPVVSPGATPGAPGSSTPGE 1813
Query: 524 GGIA----GLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQS 579
I G S + GH L P + P ++T P+ A +
Sbjct: 1814 ADIGNTSFGKSGKSGHDSLTVLN--------PAFLRRTPTVSAASTTSSPVSKHTDAASA 1865
Query: 580 -------AEPGTPPSPPGAEHGG 595
++PGTP +P GA GG
Sbjct: 1866 TAVTISGSKPGTPGTPGGATSGG 1888
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 49.3 bits (116), Expect = 1e-05
Identities = 76/323 (23%), Positives = 100/323 (30%), Gaps = 47/323 (14%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAP-LTAAQPEDAGGRAPGEEGPPRLA 360
G G +GG D T + S P ++ A P GG PGE GP
Sbjct: 1768 GASGMAGTTGGVDAATTGAASENTSER-----AGTPRVSGATPAVGGGSTPGEAGPGATV 1822
Query: 361 VGLRASSCPIILDPPGKLGTSLPG--PGANSSLREGRTSPSRPRLPQSPEHQQVSACTAT 418
G S I PG TS G G+T + S V+ +
Sbjct: 1823 SGSTGVSAGSITASPGASATSSESSKSGTTGPSVGGKTGATSSEATSSEGMSGVTGQSLG 1882
Query: 419 WPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTG 478
+ +E+ A S +G S+PP P S G EW +
Sbjct: 1883 STAGSDSEITAKTSFTG-----SSPPGKLTRPSPGSPGHFSGGTTEWGNVATTGAAGENT 1937
Query: 479 QGCSG------QALLRCGSNRTLRGGGTGQKWPG---------VPLGARTGLGAGVRQHP 523
G G +A GS T GTG PG V GA G
Sbjct: 1938 SGALGSTEGSVEATTSAGSGNTAGTSGTGDTGPGNTAVSGTPVVSPGATPGAPGSSTPGE 1997
Query: 524 GGIA----GLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQS 579
I G S + GH L P + P ++T P+ A +
Sbjct: 1998 ADIGNTSFGKSGKSGHDSLTVLN--------PAFLRRTPTVSAASTTSSPVSKHTDAASA 2049
Query: 580 -------AEPGTPPSPPGAEHGG 595
++PGTP +P GA GG
Sbjct: 2050 TAVTISGSKPGTPGTPGGATSGG 2072
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 49.3 bits (116), Expect = 1e-05
Identities = 90/346 (26%), Positives = 112/346 (32%), Gaps = 78/346 (22%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFL--PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRL 359
G QPG+ G P T P P P + L P P+ GG PG+ GPP
Sbjct: 1113 GAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPV-------GGGGHPGQPGPPGE 1165
Query: 360 AVGLRASSCPIILDP---PGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACT 416
P PG+ G PGP L + P +P +P
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPG-------- 1217
Query: 417 ATWPSCRAAELPASDSPSGW----GTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACS 472
LP G+ G PP P L+GP
Sbjct: 1218 ----------LPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNP------------- 1254
Query: 473 NLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPG--GIAGLS 530
QG G+ L G G PG+P G G + +PG G+ GL
Sbjct: 1255 ----GPQGPPGRPGLP---------GPEGP--PGLP---GNGGIKGEKGNPGQPGLPGLP 1296
Query: 531 RERGHSPWAALTDSAAGAELPGLV--PSAPRRPGSATAPRPLRVPGRGAQSAEPGT--PP 586
+G L + L G+ P P PG P VPG EPG PP
Sbjct: 1297 GLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPP 1356
Query: 587 SPPGAEHGGGPGLILLRFPAAPP-----PRLQARPAAPQTCAGCPG 627
PPG G I+++ A PP P L+ P PQ G PG
Sbjct: 1357 GPPGLPGPSGQS-IIIKGDAGPPGIPGQPGLKGLP-GPQGPQGLPG 1400
Score = 43.5 bits (101), Expect = 6e-04
Identities = 94/365 (25%), Positives = 112/365 (30%), Gaps = 90/365 (24%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSF-------LPS----SFLLCLLPAPLTAAQPEDAGGRA 350
G +PG+ G P + PN S LP S P QP +G
Sbjct: 941 GSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSG--Q 998
Query: 351 PGEEGPPRLAVGLRASSCPIILDPPGKLGT----SLPGPGANSSLREGRTSPSRPRLPQS 406
PG GPP P ++ PPG GT PGP P +P P
Sbjct: 999 PGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGL 1058
Query: 407 PEHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWR 466
P + P + LP P G P Y N G+KG S+G
Sbjct: 1059 PGQKGDKGD----PGISSIGLPGLPGPKGEPGL----PGYPGNPGIKG----SVG----- 1101
Query: 467 SRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGI 526
G G L G + PG+P G P G
Sbjct: 1102 -----------DPGLPG-----------LPGTPGAKGQPGLP-------GFPGTPGPPGP 1132
Query: 527 AGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTP- 585
G+S G+ G PG P PG P +PG Q EPG P
Sbjct: 1133 KGISGPPGNPGLPGEPGPVGGGGHPG----QPGPPGEKGKPGQDGIPGPAGQKGEPGQPG 1188
Query: 586 ---PSPPG-----AEHGGG-----PGLILLRFPAAPP-----PRLQARPAAPQTCAGCPG 627
P PPG + G G PG L P P P +Q P P G PG
Sbjct: 1189 FGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPP----GSPG 1244
Query: 628 AHLEG 632
LEG
Sbjct: 1245 PALEG 1249
Score = 42.0 bits (97), Expect = 0.002
Identities = 96/368 (26%), Positives = 120/368 (32%), Gaps = 72/368 (19%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLA- 360
G PG+ G P + P + P P P G PG+ G P L
Sbjct: 1006 GPKGNPGLPGQPGLIGPPGLKGTIGDMGF----PGPQGVEGPPGPSG-VPGQPGSPGLPG 1060
Query: 361 -------VGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVS 413
G+ + P + P G+ G LPG N ++ P P LP +P +
Sbjct: 1061 QKGDKGDPGISSIGLPGLPGPKGEPG--LPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQP 1118
Query: 414 AC-----TATWPSCRAAE-------LPASDSPSGWGTWLSTP-PPYKPNK----GLKGPT 456
T P + LP P G G P PP + K G+ GP
Sbjct: 1119 GLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPA 1178
Query: 457 RRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLG 516
+ + G G G L S + GG PG+P GL
Sbjct: 1179 GQK------------GEPGQPGFGNPGPPGLPGLSGQKGDGG-----LPGIP--GNPGL- 1218
Query: 517 AGVRQHPG--GIAGLSRERGH--SPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRV 572
G + PG G G+ G SP AL G P RPG P +
Sbjct: 1219 PGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQG----PPGRPGLPGPEGPPGL 1274
Query: 573 PGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTCAGCPGAHLEG 632
PG G E G P P G PGL L+ PP LQ P P G G +
Sbjct: 1275 PGNGGIKGEKGNPGQP------GLPGLPGLKGDQG-PPGLQGNPGRP----GLNGMKGDP 1323
Query: 633 GRLPDVAG 640
G LP V G
Sbjct: 1324 G-LPGVPG 1330
Score = 40.8 bits (94), Expect = 0.004
Identities = 119/472 (25%), Positives = 153/472 (32%), Gaps = 70/472 (14%)
Query: 201 GTPQVHGPQCPLPWPEPPAHPAVLWRGECGVN-----QGPRAPTPPGSLAGCWAHLDEVL 255
G P + GP P P P + + ++G G QGP P PPG ++ +D
Sbjct: 198 GPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGP--PGPPGQISEQKRPIDVEF 255
Query: 256 QQ----VVGSHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSG 311
Q+ + G P + KG + EP R P G G QPG+ G
Sbjct: 256 QKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQ-GEPGKRGKPGKDGENG-QPGIPG 313
Query: 312 GP-------------------DTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRA-- 350
P DT P P +P + P G +
Sbjct: 314 LPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGER 373
Query: 351 --PGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSP- 407
PG +GPP GL ++ PPG G PG ++G P +P P
Sbjct: 374 GFPGIQGPP----GLPGPPGAAVMGPPGPPGF----PGERG--QKGDEGPPGISIPGPPG 423
Query: 408 -EHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWR 466
+ Q + P +P SD G PP +KGL+G ++
Sbjct: 424 LDGQPGAPGLPGPPGPAGPHIPPSDEICEPGP--PGPPGSPGDKGLQGEQG-----VKGD 476
Query: 467 SRLACSNLLRTG-QGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGA-GVRQHPG 524
C N + TG G GQ L G GQK GA G G+ PG
Sbjct: 477 KGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPG 536
Query: 525 GIAGLSRERGHSPWAALTDSAAGAELPGL-VPSAPRRPGSATAPRPLRVPGRGAQSAEPG 583
G +G P LT + L P AP PG P +PG EPG
Sbjct: 537 A-PGFPGSKGE-PGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPG 594
Query: 584 --------TPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTCAGCPG 627
PP PG G PG I P P Q AG PG
Sbjct: 595 GITFKGERGPPGNPGLP--GLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPG 644
Score = 37.7 bits (86), Expect = 0.033
Identities = 119/458 (25%), Positives = 148/458 (32%), Gaps = 91/458 (19%)
Query: 226 RGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVVGSHPAKHPLFLAREDACTPEVKGINM 285
RG G+ P P PPG+ V+G P P F P +G
Sbjct: 373 RGFPGIQGPPGLPGPPGAA-------------VMG--PPGPPGF--------PGERGQKG 409
Query: 286 DVCEEPASRTMPYCGGGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPED 345
D E P ++P G G QPG G P P P +P S +C P P D
Sbjct: 410 D--EGPPGISIPGPPGLDG-QPGAPGLPGPPGPAGPH--IPPSDEICEPGPPGPPGSPGD 464
Query: 346 AGGRAPGEEGPPRLAVGLRASSC-----PIILDPPGKLGT-SLPGPGANSSL-------- 391
G GE+G G + +C I PPG+ G LPGP +
Sbjct: 465 KG--LQGEQG----VKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKG 518
Query: 392 REGRTSPS-------RPRLPQSPEHQQVSACTATWPSCRA--AELPASDSPSGWGTWLST 442
+ G T P P P P + T+P + EL + +P G L
Sbjct: 519 QAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPG--LPG 576
Query: 443 PPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTG-------QGCSGQALLRCGSNRTL 495
P GL GP G+ R N G G G + +
Sbjct: 577 TPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGI 636
Query: 496 RGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGL-- 553
+G PG+P G + G + Q G GL G L PGL
Sbjct: 637 QGVAGNPGQPGIP-GPKGDPGQTITQP--GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG 693
Query: 554 VPSAPRRPGSATA-----PRPLRVPGRGAQSAEPGTP--------PSPPGAEHGGG-PGL 599
+P + PG P P PG PGTP P PPG G PG
Sbjct: 694 IPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGF 753
Query: 600 ILLRFPAAP-PPRLQARPAA--PQTCAGCPGAHLEGGR 634
L P P PP L A P+ G PG GR
Sbjct: 754 AL---PGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGR 788
Score = 37.7 bits (86), Expect = 0.033
Identities = 88/365 (24%), Positives = 114/365 (31%), Gaps = 68/365 (18%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFL-----PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGP 356
G PG+ G L P F P L LP P P PG GP
Sbjct: 757 GPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQ----PGPMGP 812
Query: 357 PRL-AVGLRASSCPIILDPPGKLGTSLPGPGANSSLR-----EGRTSPSRPRLPQSPEHQ 410
P L +G++ PPG G +PGP L +G P +P P +
Sbjct: 813 PGLPGIGVQG--------PPGPPG--IPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER 862
Query: 411 Q---VSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRS 467
+ + LP SG+ P K G+ GP G L
Sbjct: 863 GSPGIPGAPGPIGPPGSPGLPGKAGASGF-------PGTKGEMGMMGPPGPP-GPLGIPG 914
Query: 468 RLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPG--G 525
R L + G GQ L + G G P P+ G + PG G
Sbjct: 915 RSGVPGL-KGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPG 973
Query: 526 IAGLSRERGHSPWAALTDSAAGAELPGLV--------PSAPRRPG------------SAT 565
I G+S +G+ + PGL P P +PG
Sbjct: 974 IPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMG 1033
Query: 566 APRPLRV---PGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTC 622
P P V PG +PG+P P G PG+ + P P P+ P P
Sbjct: 1034 FPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPK--GEPGLP--- 1088
Query: 623 AGCPG 627
G PG
Sbjct: 1089 -GYPG 1092
Score = 35.4 bits (80), Expect = 0.16
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 550 LPGL--VPSAPRRPGSATAPRPLRVPGRGAQSAE---PGT--------PPSPPGAE-HGG 595
LPG P P PG AP P +PG E PG+ PP PPG G
Sbjct: 97 LPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKG 156
Query: 596 GPGLILLRFPAAPPPRLQARPAAPQTCAGCPG 627
PG I++ + P P+ P G PG
Sbjct: 157 EPGSIIM--SSLPGPKGNPGYPGPPGIQGLPG 186
Score = 34.7 bits (78), Expect = 0.28
Identities = 115/457 (25%), Positives = 147/457 (32%), Gaps = 96/457 (21%)
Query: 207 GPQCPLPWPEPPAHPAVLW-------RGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVV 259
GP+ +P PP P +G+ G N P PPG L G +
Sbjct: 772 GPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPG-LPGIGVQGPPGPPGIP 830
Query: 260 G--SHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGGPDTLT 317
G P H + + D P +DV P R P G G G G P
Sbjct: 831 GPIGQPGLHGIPGEKGDPGPP-----GLDVPGPPGERGSPGIPGAPGPI-GPPGSPGLPG 884
Query: 318 PNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGK 377
S F + + ++ P P G PG G P L P + P G+
Sbjct: 885 KAGASGFPGTKGEMGMMGPP---GPPGPLG--IPGRSGVPGLKGDDGLQGQPGLPGPTGE 939
Query: 378 LGTS----LPGPGA--NSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASD 431
G+ LPGP + +L + P LP P LP
Sbjct: 940 KGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQG---------LPGDP 990
Query: 432 SPSGWG--TWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRC 489
G L PP K N GL G GL+ G G
Sbjct: 991 GQPGLSGQPGLPGPPGPKGNPGLPGQP----GLI----------------GPPG------ 1024
Query: 490 GSNRTLRGGGTGQKWPGVPLGARTGLG-AGVRQHPG--GIAGLSRERGHSPWAALTDSAA 546
L+G +PG P G G +GV PG G+ G ++G +++
Sbjct: 1025 -----LKGTIGDMGFPG-PQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIG---- 1074
Query: 547 GAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTP--PSPPGAEHGGGPGLILLRF 604
LPGL P PG P PG +PG P P PGA+ G PG L F
Sbjct: 1075 ---LPGL-PGPKGEPGLPGYPGN---PGIKGSVGDPGLPGLPGTPGAK--GQPG--LPGF 1123
Query: 605 PAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAGG 641
P P P P+ +G PG G V GG
Sbjct: 1124 PGTP------GPPGPKGISGPPGNPGLPGEPGPVGGG 1154
Score = 33.1 bits (74), Expect = 0.81
Identities = 37/125 (29%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 523 PGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEP 582
P GI G+ E G ++L PG P PG P P+ PG P
Sbjct: 148 PPGIPGMKGEPGSIIMSSLPGPKGNPGYPG-PPGIQGLPGPTGIPGPIGPPGPPGLMGPP 206
Query: 583 GTPPSPPGAEHG---------GGPGLILLRFPAAPPPRL--QARPAAPQTCAGCPGAHLE 631
G PP PG + G G L+ P PP ++ Q RP + G G L
Sbjct: 207 G-PPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQG--LP 263
Query: 632 GGRLP 636
G R P
Sbjct: 264 GDRGP 268
Score = 31.2 bits (69), Expect = 3.1
Identities = 27/82 (32%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 555 PSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPP-PRLQ 613
P PG P P PG Q + G P P G PG L FP P P +
Sbjct: 53 PGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPG--LPGFPGTPGLPGMP 110
Query: 614 ARPAA--PQTCAGCPGAHLEGG 633
A PQ GC G E G
Sbjct: 111 GHDGAPGPQGIPGCNGTKGERG 132
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 49.3 bits (116), Expect = 1e-05
Identities = 48/157 (30%), Positives = 57/157 (36%), Gaps = 13/157 (8%)
Query: 490 GSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAE 549
G + T GGGTG P P G T L PGG G H P D+A +
Sbjct: 490 GPSTTSSGGGTG---PHPPSG--TTLRPPTSSTPGGPPGAENSTSHQPATPGGDTAQTPK 544
Query: 550 LPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGT-PPSPPGAEHGGGPGLILLRFPAAP 608
PG P G++T+ +P G AQ+ EPGT P PP G PA P
Sbjct: 545 -PGTSQPMPPGVGTSTSHQPATPSGGTAQTPEPGTSQPMPPSM------GTSTSHQPATP 597
Query: 609 PPRLQARPAAPQTCAGCPGAHLEGGRLPDVAGGDAQQ 645
P A + PG P GG Q
Sbjct: 598 GGGTAQTPEAGTSQPMPPGMGTSTSHQPTTPGGGTAQ 634
Score = 39.3 bits (90), Expect = 0.011
Identities = 80/314 (25%), Positives = 97/314 (30%), Gaps = 60/314 (19%)
Query: 302 GGGSQPGVSGG-----PDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGP 356
GGG+ P G P + TP P S+ P TA P+ PG P
Sbjct: 497 GGGTGPHPPSGTTLRPPTSSTPGGPPGAENSTSHQPATPGGDTAQTPK------PGTSQP 550
Query: 357 PRLAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACT 416
VG S P + P G + G + P P + S HQ +
Sbjct: 551 MPPGVGTSTSHQP-----------ATPSGGTAQTPEPGTSQPMPPSMGTSTSHQPATPGG 599
Query: 417 ATWPSCRAAELPASDSPSGWGTWLSTPPP-------YKPNKGLKGPTRRSLGLLEWRSRL 469
T + A + P G GT S P P G P S
Sbjct: 600 GTAQTPEAGT--SQPMPPGMGTSTSHQPTTPGGGTAQTPEPGTSQPMPLS---------- 647
Query: 470 ACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPG----- 524
+ +G G S L GG G + L A GL V +H G
Sbjct: 648 --KSTPSSGGGPSEDKRFSVVDMAAL-GGVLG----ALLLLALLGLAVLVHKHYGPRLKC 700
Query: 525 --GIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEP 582
G A + +G A L D A VPS P A AP P G A P
Sbjct: 701 CSGKAPEPQPQGFDNQAFLPDHKANW---APVPSPTHDPKPAEAPMPAEPAPPGP--ASP 755
Query: 583 GTPPSPPGAEHGGG 596
G P PP A GG
Sbjct: 756 GGAPEPPAAARAGG 769
Score = 31.2 bits (69), Expect = 3.1
Identities = 21/65 (32%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 581 EPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAG 640
EP PS + G GP PP RP T G PGA P G
Sbjct: 486 EPSQGPSTTSSGGGTGPH---------PPSGTTLRPPTSSTPGGPPGAENSTSHQPATPG 536
Query: 641 GDAQQ 645
GD Q
Sbjct: 537 GDTAQ 541
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 48.9 bits (115), Expect = 1e-05
Identities = 121/461 (26%), Positives = 150/461 (32%), Gaps = 81/461 (17%)
Query: 195 KSDLGRGTPQVHGPQCPL--PWPE-PPAHPAVLWRGECGVNQGPRAPTPPGSLAGCWAHL 251
K D G P GP+ PL P P PP P +G+ G ++G R P PG G A
Sbjct: 1367 KGDPGPSGPP--GPRGPLGDPGPRGPPGLPGTAMKGDKG-DRGERGPPGPGE--GGIAPG 1421
Query: 252 DEVLQQVVGSHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSG 311
+ L + GS + P+ P KG D E + +P G G Q G G
Sbjct: 1422 EPGLPGLPGSPGPQGPVG-------PPGKKGEKGD--SEDGAPGLPGQPGSPGEQ-GPRG 1471
Query: 312 GPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPII 371
P + P F P PL A + GE GPP A + P +
Sbjct: 1472 PPGAIGPKGDRGF----------PGPLGEAGEK-------GERGPPGPA---GSRGLPGV 1511
Query: 372 LDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASD 431
PG G GP + + + P RP P V P ++ +
Sbjct: 1512 AGRPGAKGPE--GPPGPTGRQGEKGEPGRPGDPA------VVGPAVAGPKGEKGDVGPAG 1563
Query: 432 SPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGS 491
G PP G GP R G +G+A S
Sbjct: 1564 PRGATGVQGERGPPGLVLPGDPGPKGDPGD--------------RGPIGLTGRAGPPGDS 1609
Query: 492 NRTLRGGGTGQKWPGVPLGARTGLGA----GVRQHPG--GIAGLSRERGHSPWAALTDSA 545
G G+ P P+G R G G PG G+ G + ERG A
Sbjct: 1610 GPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERG-------LRGA 1662
Query: 546 AGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFP 605
G P PG G EPG PP PPG GPG R
Sbjct: 1663 PGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPG-PPGPPGRLVDTGPG---AREK 1718
Query: 606 AAPPPRLQARPAAPQTCAGCPGA----HLEGGRLPDVAGGD 642
P R Q P P+ G PGA +EG R P GD
Sbjct: 1719 GEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGD 1759
Score = 45.4 bits (106), Expect = 2e-04
Identities = 45/134 (33%), Positives = 53/134 (39%), Gaps = 9/134 (6%)
Query: 505 PGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSA 564
PG+P RTG A Q P G A ERG S A PG P AP GS
Sbjct: 1274 PGLP--GRTG--APGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPG-TPGAPGLKGSP 1328
Query: 565 TAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLR---FPAAPP-PRLQARPAAPQ 620
P P PG G P +P G GPGL + P+ PP PR P+
Sbjct: 1329 GLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPR 1388
Query: 621 TCAGCPGAHLEGGR 634
G PG ++G +
Sbjct: 1389 GPPGLPGTAMKGDK 1402
Score = 40.4 bits (93), Expect = 0.005
Identities = 89/321 (27%), Positives = 110/321 (34%), Gaps = 42/321 (13%)
Query: 351 PGEEGPPRLAVGLRASSCPI-ILDPPGKLGTSLPG-PGANSSLRE-GRTSPSRPRLPQSP 407
PG +GPP LA+G R P + PGK G +PG PG + E GR R +
Sbjct: 2011 PGPQGPPGLALGERGPPGPSGLAGEPGKPG--IPGLPGRAGGVGEAGRPGERGERGEKGE 2068
Query: 408 EHQQVSACTATWPSCRAAELPAS-----DSPSGWGTWLSTPPPYKPNKGLKGPT------ 456
+Q P P D P + PP K KG G
Sbjct: 2069 RGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPK 2128
Query: 457 --RRSLGLLEWRS----RLACSNLLRTGQ----GCSGQALLRCGSNRTLRGGGTGQKWPG 506
R G+ R R N G+ G G+ L+ GG G PG
Sbjct: 2129 GDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGD--PG 2186
Query: 507 VPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATA 566
P GA G Q P G+ G E G P LT LPG P P
Sbjct: 2187 PP-GAPGLAGPAGPQGPSGLKGEPGETG-PPGRGLTGPTGAVGLPG-----PPGPSGLVG 2239
Query: 567 PRPLR-VPGRGAQSAEPGTP----PSPPGAEHG--GGPGLILLRFPAAPPPRLQARPAAP 619
P+ +PG+ ++ +PG P S + G G PG L P P A
Sbjct: 2240 PQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPG 2299
Query: 620 QTCAGCPGAHLEGGRLPDVAG 640
Q G PGA E G +AG
Sbjct: 2300 QAVVGLPGAKGEKGAPGGLAG 2320
Score = 37.7 bits (86), Expect = 0.033
Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 555 PSAPRRPGSATAPRPLRVPGRGAQSAEPGTP-----PSPPG-AEHGGGPGLILLR-FPAA 607
P P PG AP P PG E G P P PG A + G PG L+ P
Sbjct: 1271 PGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGL 1330
Query: 608 PPPRLQARPAAPQTCAGCPGA--HLEGGRLPDVAG 640
P PR P+ G PGA + GG P + G
Sbjct: 1331 PGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPG 1365
Score = 37.7 bits (86), Expect = 0.033
Identities = 88/338 (26%), Positives = 106/338 (31%), Gaps = 75/338 (22%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAV 361
GG PG G P P P P G PGE GPP
Sbjct: 2180 GGHGDPGPPGAPGLAGPAGPQG-------------------PSGLKGE-PGETGPPGRG- 2218
Query: 362 GLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPS 421
+ P G +G LPGP S L + SP P Q E + A S
Sbjct: 2219 ---------LTGPTGAVG--LPGPPGPSGLVGPQGSPGLPG--QVGETGKPGAPGRDGAS 2265
Query: 422 CRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGC 481
+ + + P G P P P KG GPT G
Sbjct: 2266 GKDGDRGSPGVPGSPGL----PGPVGP-KGEPGPT-----------------------GA 2297
Query: 482 SGQALLRCGSNRTLRG--GGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWA 539
GQA++ + +G GG G P GA+ G + G AG + E G P
Sbjct: 2298 PGQAVVGLPGAKGEKGAPGGLAGDLVGEP-GAKGDRGLPGPRGEKGEAGRAGEPG-DPGE 2355
Query: 540 ALTDSAAGAEL----PGL-VPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHG 594
A G + PG+ VP +P PG L +PG G P
Sbjct: 2356 DGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEM 2415
Query: 595 GGPGLILLRFPAAPPPRL----QARPAAPQTCAGCPGA 628
G PG R A PP R P P G PGA
Sbjct: 2416 GQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGA 2453
Score = 31.6 bits (70), Expect = 2.4
Identities = 63/244 (25%), Positives = 79/244 (32%), Gaps = 75/244 (30%)
Query: 344 EDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRL 403
ED +PG GP G R P PPG+L + GPGA G PR
Sbjct: 1680 EDGRNGSPGSSGPK----GDRGEPGPP--GPPGRLVDT--GPGAREKGEPGDRGQEGPRG 1731
Query: 404 PQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLL 463
P+ LP + G + P P + + G++GP
Sbjct: 1732 PKGDPG-----------------LPGAPGERGIEGFRGPPGP-QGDPGVRGPAGEKGD-- 1771
Query: 464 EWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHP 523
R G G++ L G G P P GA AG P
Sbjct: 1772 ------------RGPPGLDGRSGL---------DGKPGAAGPSGPNGA-----AGKAGDP 1805
Query: 524 G--GIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAE 581
G G+ GL E+G LPG PS P PG P PG ++ E
Sbjct: 1806 GRDGLPGLRGEQG---------------LPG--PSGP--PGLPGKPGEDGKPGLNGKNGE 1846
Query: 582 PGTP 585
PG P
Sbjct: 1847 PGDP 1850
Score = 30.8 bits (68), Expect = 4.0
Identities = 30/114 (26%), Positives = 40/114 (35%), Gaps = 13/114 (11%)
Query: 498 GGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSA 557
G G P P G R LG + P G+ G + + G G+ P
Sbjct: 1365 GRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEG--GIAPGE 1422
Query: 558 PRRPGSATAP---RPLRVPGRGAQSAE--------PGTPPSPPGAEHGGGPGLI 600
P PG +P P+ PG+ + + PG P SP G PG I
Sbjct: 1423 PGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAI 1476
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 48.9 bits (115), Expect = 1e-05
Identities = 83/304 (27%), Positives = 113/304 (37%), Gaps = 62/304 (20%)
Query: 342 QPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRP 401
+ +D R E PP LRA S PI+ P P A +S T +R
Sbjct: 1869 ESQDELSRPSSEAPPPGPPHALRADSSPILGPQP---------PDAPAS----GTEATRG 1915
Query: 402 RLPQSPEHQQVSACTATWPSCRA----AELPASDSPSGWGTWLSTPP-----PYKPNK-- 450
E S+C+ + S P G+ LS P P+ P+K
Sbjct: 1916 SSVSEAERLTASSCSMSSQSMPGLPWLGPAPLGSVEKDTGSALSYKPVSPRRPWSPSKEA 1975
Query: 451 GLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLG 510
G + P R L T S Q RC R + PG+ +
Sbjct: 1976 GSRPPLARKHSL--------------TKNDSSPQ---RCSPAREPQASAPSP--PGLHVD 2016
Query: 511 ARTGLGA------GVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRR---P 561
G+GA ++ P + L RE +P A + G PGL +P R P
Sbjct: 2017 PGRGMGALPCGSPRLQLSPLTLCPLGREL--APRAHVLSKLEGTTDPGLPRYSPTRRWSP 2074
Query: 562 GSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGL-ILLRFPAAP-PPRLQARPAAP 619
G A +P PG+ A + P SP EHG G GL + FP AP P +L +R +P
Sbjct: 2075 GQAESPPRSAPPGKWALAG----PGSPSAGEHGPGLGLDPRVLFPPAPLPHKLLSR--SP 2128
Query: 620 QTCA 623
+TCA
Sbjct: 2129 ETCA 2132
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 48.9 bits (115), Expect = 1e-05
Identities = 83/304 (27%), Positives = 113/304 (37%), Gaps = 62/304 (20%)
Query: 342 QPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRP 401
+ +D R E PP LRA S PI+ P P A +S T +R
Sbjct: 1869 ESQDELSRPSSEAPPPGPPHALRADSSPILGPQP---------PDAPAS----GTEATRG 1915
Query: 402 RLPQSPEHQQVSACTATWPSCRA----AELPASDSPSGWGTWLSTPP-----PYKPNK-- 450
E S+C+ + S P G+ LS P P+ P+K
Sbjct: 1916 SSVSEAERLTASSCSMSSQSMPGLPWLGPAPLGSVEKDTGSALSYKPVSPRRPWSPSKEA 1975
Query: 451 GLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLG 510
G + P R L T S Q RC R + PG+ +
Sbjct: 1976 GSRPPLARKHSL--------------TKNDSSPQ---RCSPAREPQASAPSP--PGLHVD 2016
Query: 511 ARTGLGA------GVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRR---P 561
G+GA ++ P + L RE +P A + G PGL +P R P
Sbjct: 2017 PGRGMGALPCGSPRLQLSPLTLCPLGREL--APRAHVLSKLEGTTDPGLPRYSPTRRWSP 2074
Query: 562 GSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGL-ILLRFPAAP-PPRLQARPAAP 619
G A +P PG+ A + P SP EHG G GL + FP AP P +L +R +P
Sbjct: 2075 GQAESPPRSAPPGKWALAG----PGSPSAGEHGPGLGLDPRVLFPPAPLPHKLLSR--SP 2128
Query: 620 QTCA 623
+TCA
Sbjct: 2129 ETCA 2132
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 48.5 bits (114), Expect = 2e-05
Identities = 100/368 (27%), Positives = 119/368 (32%), Gaps = 74/368 (20%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSS--FLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRL 359
G +PG G P P P L +F A + E AGG G P
Sbjct: 150 GRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA-----AQMAGGFDEKAGGAQLGVMQGPMG 204
Query: 360 AVGLRASSCPIILDPPGKLGTSLPGP-GANSSLRE----GRTSPSRPRLPQSPEHQQVSA 414
+G R PPG G PGP G + E G + P PR P P +
Sbjct: 205 PMGPRG--------PPGPAGA--PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDD 254
Query: 415 CTATWPSCRAAELPASDSPSGWGTWLSTP--PPYKPNKGLKGPTRRSLGLLEWRSRLACS 472
A P P P G + TP P K ++G G
Sbjct: 255 GEAGKPGKAGERGPPG--PQGARGFPGTPGLPGVKGHRGYPG------------------ 294
Query: 473 NLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRE 532
L +G +G ++ S G G P+G R G R P G AG
Sbjct: 295 --LDGAKGEAGAPGVKGESGSPGENGSPG------PMGPRGLPGERGRTGPAGAAGARGN 346
Query: 533 RGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQS--AEPGTPPSPPG 590
G A A PG P AP G A P R P GAQ EPGTP SP
Sbjct: 347 DGQPGPAGPPGPVGPAGGPGF-PGAPGAKGEA-GPTGARGP-EGAQGPRGEPGTPGSPGP 403
Query: 591 AEHGGGPGLI-------------LLRFPAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPD 637
A G PG + P P PR P PQ G G + G P
Sbjct: 404 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPR---GPPGPQGATGPLGPKGQTGE-PG 459
Query: 638 VAGGDAQQ 645
+AG +Q
Sbjct: 460 IAGFKGEQ 467
Score = 43.9 bits (102), Expect = 5e-04
Identities = 77/305 (25%), Positives = 101/305 (33%), Gaps = 36/305 (11%)
Query: 342 QPEDAGGR-------APGEEGPPRLAVGLRASSCPIILDPPGKLGTS-LPGPGANSSLRE 393
+P DAG + APGE+G P A P ++ PG G + PG L
Sbjct: 565 RPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGL-- 622
Query: 394 GRTSPSRPRLPQSP-EHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGL 452
P P L P + + A P+ A E +P G PP P +G
Sbjct: 623 ----PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGG 678
Query: 453 KGPTRRSLGLLEWRSRLACSNLL--RTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLG 510
K + G L+ R +G G+ G G P G
Sbjct: 679 KPGDQGVPG------EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKG 732
Query: 511 ARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPL 570
A G Q P G+ G+ ERG + A G AP + G P+
Sbjct: 733 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKG-PEGAPGKDGGRGLTGPI 791
Query: 571 RVPGRGAQSAEPGT--PPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTCAGCPGA 628
PG + E G PP P G+ G AP R + P P AG PGA
Sbjct: 792 GPPGPAGANGEKGEVGPPGPAGSAGARG----------APGERGETGPPGPAGFAGPPGA 841
Query: 629 HLEGG 633
+ G
Sbjct: 842 DGQPG 846
Score = 42.7 bits (99), Expect = 0.001
Identities = 91/361 (25%), Positives = 116/361 (32%), Gaps = 96/361 (26%)
Query: 291 PASRTMPYCGGGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAG-GR 349
P+ + P G PG +G P P P P +P D G
Sbjct: 922 PSGKDGPKGARGDSGPPGRAGEPGLQGPAGP---------------PGEKGEPGDDGPSG 966
Query: 350 APGEEGPPRLAVGLRASSCPIILDPPGKLGT----SLPGPGANSSLREGRTSPSRPRLPQ 405
A G GP LA G R I+ PG+ G LPGP ++G S R P
Sbjct: 967 AEGPPGPQGLA-GQRG-----IVGLPGQRGERGFPGLPGPSGEPG-KQGAPGASGDRGPP 1019
Query: 406 SPEHQQVSACTATWPSCRAAELPASDSPSGW----------------GTWLSTPPPYKPN 449
P A P + P +D P G G + PP P
Sbjct: 1020 GPVGPPGLTGPAGEPGREGS--PGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP- 1076
Query: 450 KGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPL 509
G GPT + QG G+A + + G G + P P
Sbjct: 1077 -GPAGPTGK--------------------QGDRGEAGAQGPMGPSGPAGARGIQGPQGPR 1115
Query: 510 GARTGLGA----GVRQHPG--GIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRP-- 561
G + G G++ H G G+ GL G S GA P PS PR P
Sbjct: 1116 GDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPS-------GDQGASGPA-GPSGPRGPPG 1167
Query: 562 --------GSATAPRPLRVPGRGAQSAEPGTP-----PSPPGAEHGGGPGLILLRFPAAP 608
G+ P P+ PG +S E G P PPG GPG+ + F
Sbjct: 1168 PVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLG 1227
Query: 609 P 609
P
Sbjct: 1228 P 1228
Score = 40.8 bits (94), Expect = 0.004
Identities = 81/322 (25%), Positives = 96/322 (29%), Gaps = 63/322 (19%)
Query: 334 LPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPII---LDPPGKLGTSLPG-----P 385
L P+ P A G GE GPP A A P PPG G + P P
Sbjct: 787 LTGPIGPPGPAGANGEK-GEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP 845
Query: 386 GANSSLRE----GRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWLS 441
GA E G P+ P Q R A+ P +
Sbjct: 846 GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Query: 442 TPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTG 501
PP N G GP S G G R S R G G
Sbjct: 906 GPPGSNGNPGPPGPPGPS--------------------GKDGPKGARGDSGPPGRAGEPG 945
Query: 502 QKWPGVPLGARTGLG----AGVRQHPG--------GIAGLSRERGHSPWAALTDSAAGAE 549
+ P P G + G +G PG GI GL +RG + L +
Sbjct: 946 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG 1005
Query: 550 LPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPS-----PPGAEHGGG-------P 597
G AP G P P+ PG + EPG S PPG + G
Sbjct: 1006 KQG----APGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGET 1061
Query: 598 GLILLRFPAAPPPRLQARPAAP 619
G + P AP P PA P
Sbjct: 1062 GAV--GAPGAPGPPGSPGPAGP 1081
Score = 39.3 bits (90), Expect = 0.011
Identities = 122/461 (26%), Positives = 146/461 (31%), Gaps = 132/461 (28%)
Query: 201 GTPQVHGPQCPLPWPEPPAHPAVLWRGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVVG 260
G P V GP P P PP P GE G PPG L V G
Sbjct: 231 GEPGVSGPMGPRGPPGPPGKPGD--DGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKG 288
Query: 261 SHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGGPDTLTPNS 320
H L A+ +A P VKG + PG +G P + P
Sbjct: 289 -HRGYPGLDGAKGEAGAPGVKGES--------------------GSPGENGSPGPMGPRG 327
Query: 321 PSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGT 380
LP P A G A G +G P A PPG +G
Sbjct: 328 -------------LPGERGRTGPAGAAG-ARGNDGQPGPA------------GPPGPVGP 361
Query: 381 SL-PG-PGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSGWGT 438
+ PG PGA + +G P+ R P+ + + T P S P+G
Sbjct: 362 AGGPGFPGAPGA--KGEAGPTGARGPEGAQGPRGEPGT-----------PGSPGPAG--- 405
Query: 439 WLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGG 498
S P G KG S G G +G G
Sbjct: 406 -ASGNPGTDGIPGAKG----SAG----------------APGIAGAP------------G 432
Query: 499 GTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERG-----------HSPWAALTDSAAG 547
G + P P GA LG + GIAG E+G +P A + G
Sbjct: 433 FPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRG 492
Query: 548 A--ELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTP----PS----PPGAE-HGGG 596
A E G+ P P PG AP PG+ + G P PS P GA G
Sbjct: 493 ARGEPGGVGPIGP--PGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 550
Query: 597 PGLILLRFPAAPPPR-LQARP--AAPQTCAGCPGAHLEGGR 634
PG P P R L RP A PQ G GA E GR
Sbjct: 551 PG-----EPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGR 586
Score = 31.2 bits (69), Expect = 3.1
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 555 PSAPRRPGSATAPRPLR-------VPGRGAQSAEPGTP--PSPPGAEHGGGP 597
P P+ P PR R PG + EPGTP P PPG GP
Sbjct: 121 PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGP 172
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 48.5 bits (114), Expect = 2e-05
Identities = 100/368 (27%), Positives = 119/368 (32%), Gaps = 74/368 (20%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSS--FLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRL 359
G +PG G P P P L +F A + E AGG G P
Sbjct: 81 GRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA-----AQMAGGFDEKAGGAQLGVMQGPMG 135
Query: 360 AVGLRASSCPIILDPPGKLGTSLPGP-GANSSLRE----GRTSPSRPRLPQSPEHQQVSA 414
+G R PPG G PGP G + E G + P PR P P +
Sbjct: 136 PMGPRG--------PPGPAGA--PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDD 185
Query: 415 CTATWPSCRAAELPASDSPSGWGTWLSTP--PPYKPNKGLKGPTRRSLGLLEWRSRLACS 472
A P P P G + TP P K ++G G
Sbjct: 186 GEAGKPGKAGERGPPG--PQGARGFPGTPGLPGVKGHRGYPG------------------ 225
Query: 473 NLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRE 532
L +G +G ++ S G G P+G R G R P G AG
Sbjct: 226 --LDGAKGEAGAPGVKGESGSPGENGSPG------PMGPRGLPGERGRTGPAGAAGARGN 277
Query: 533 RGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQS--AEPGTPPSPPG 590
G A A PG P AP G A P R P GAQ EPGTP SP
Sbjct: 278 DGQPGPAGPPGPVGPAGGPGF-PGAPGAKGEA-GPTGARGP-EGAQGPRGEPGTPGSPGP 334
Query: 591 AEHGGGPGLI-------------LLRFPAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPD 637
A G PG + P P PR P PQ G G + G P
Sbjct: 335 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPR---GPPGPQGATGPLGPKGQTGE-PG 390
Query: 638 VAGGDAQQ 645
+AG +Q
Sbjct: 391 IAGFKGEQ 398
Score = 43.9 bits (102), Expect = 5e-04
Identities = 77/305 (25%), Positives = 101/305 (33%), Gaps = 36/305 (11%)
Query: 342 QPEDAGGR-------APGEEGPPRLAVGLRASSCPIILDPPGKLGTS-LPGPGANSSLRE 393
+P DAG + APGE+G P A P ++ PG G + PG L
Sbjct: 496 RPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGL-- 553
Query: 394 GRTSPSRPRLPQSP-EHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGL 452
P P L P + + A P+ A E +P G PP P +G
Sbjct: 554 ----PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGG 609
Query: 453 KGPTRRSLGLLEWRSRLACSNLL--RTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLG 510
K + G L+ R +G G+ G G P G
Sbjct: 610 KPGDQGVPG------EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKG 663
Query: 511 ARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPL 570
A G Q P G+ G+ ERG + A G AP + G P+
Sbjct: 664 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKG-PEGAPGKDGGRGLTGPI 722
Query: 571 RVPGRGAQSAEPGT--PPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTCAGCPGA 628
PG + E G PP P G+ G AP R + P P AG PGA
Sbjct: 723 GPPGPAGANGEKGEVGPPGPAGSAGARG----------APGERGETGPPGPAGFAGPPGA 772
Query: 629 HLEGG 633
+ G
Sbjct: 773 DGQPG 777
Score = 42.7 bits (99), Expect = 0.001
Identities = 91/361 (25%), Positives = 116/361 (32%), Gaps = 96/361 (26%)
Query: 291 PASRTMPYCGGGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAG-GR 349
P+ + P G PG +G P P P P +P D G
Sbjct: 853 PSGKDGPKGARGDSGPPGRAGEPGLQGPAGP---------------PGEKGEPGDDGPSG 897
Query: 350 APGEEGPPRLAVGLRASSCPIILDPPGKLGT----SLPGPGANSSLREGRTSPSRPRLPQ 405
A G GP LA G R I+ PG+ G LPGP ++G S R P
Sbjct: 898 AEGPPGPQGLA-GQRG-----IVGLPGQRGERGFPGLPGPSGEPG-KQGAPGASGDRGPP 950
Query: 406 SPEHQQVSACTATWPSCRAAELPASDSPSGW----------------GTWLSTPPPYKPN 449
P A P + P +D P G G + PP P
Sbjct: 951 GPVGPPGLTGPAGEPGREGS--PGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP- 1007
Query: 450 KGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPL 509
G GPT + QG G+A + + G G + P P
Sbjct: 1008 -GPAGPTGK--------------------QGDRGEAGAQGPMGPSGPAGARGIQGPQGPR 1046
Query: 510 GARTGLGA----GVRQHPG--GIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRP-- 561
G + G G++ H G G+ GL G S GA P PS PR P
Sbjct: 1047 GDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPS-------GDQGASGPA-GPSGPRGPPG 1098
Query: 562 --------GSATAPRPLRVPGRGAQSAEPGTP-----PSPPGAEHGGGPGLILLRFPAAP 608
G+ P P+ PG +S E G P PPG GPG+ + F
Sbjct: 1099 PVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLG 1158
Query: 609 P 609
P
Sbjct: 1159 P 1159
Score = 40.8 bits (94), Expect = 0.004
Identities = 81/322 (25%), Positives = 96/322 (29%), Gaps = 63/322 (19%)
Query: 334 LPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPII---LDPPGKLGTSLPG-----P 385
L P+ P A G GE GPP A A P PPG G + P P
Sbjct: 718 LTGPIGPPGPAGANGEK-GEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP 776
Query: 386 GANSSLRE----GRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWLS 441
GA E G P+ P Q R A+ P +
Sbjct: 777 GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 836
Query: 442 TPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTG 501
PP N G GP S G G R S R G G
Sbjct: 837 GPPGSNGNPGPPGPPGPS--------------------GKDGPKGARGDSGPPGRAGEPG 876
Query: 502 QKWPGVPLGARTGLG----AGVRQHPG--------GIAGLSRERGHSPWAALTDSAAGAE 549
+ P P G + G +G PG GI GL +RG + L +
Sbjct: 877 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG 936
Query: 550 LPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPS-----PPGAEHGGG-------P 597
G AP G P P+ PG + EPG S PPG + G
Sbjct: 937 KQG----APGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGET 992
Query: 598 GLILLRFPAAPPPRLQARPAAP 619
G + P AP P PA P
Sbjct: 993 GAV--GAPGAPGPPGSPGPAGP 1012
Score = 39.3 bits (90), Expect = 0.011
Identities = 122/461 (26%), Positives = 146/461 (31%), Gaps = 132/461 (28%)
Query: 201 GTPQVHGPQCPLPWPEPPAHPAVLWRGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVVG 260
G P V GP P P PP P GE G PPG L V G
Sbjct: 162 GEPGVSGPMGPRGPPGPPGKPGD--DGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKG 219
Query: 261 SHPAKHPLFLAREDACTPEVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGGPDTLTPNS 320
H L A+ +A P VKG + PG +G P + P
Sbjct: 220 -HRGYPGLDGAKGEAGAPGVKGES--------------------GSPGENGSPGPMGPRG 258
Query: 321 PSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGT 380
LP P A G A G +G P A PPG +G
Sbjct: 259 -------------LPGERGRTGPAGAAG-ARGNDGQPGPA------------GPPGPVGP 292
Query: 381 SL-PG-PGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSGWGT 438
+ PG PGA + +G P+ R P+ + + T P S P+G
Sbjct: 293 AGGPGFPGAPGA--KGEAGPTGARGPEGAQGPRGEPGT-----------PGSPGPAG--- 336
Query: 439 WLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGG 498
S P G KG S G G +G G
Sbjct: 337 -ASGNPGTDGIPGAKG----SAG----------------APGIAGAP------------G 363
Query: 499 GTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERG-----------HSPWAALTDSAAG 547
G + P P GA LG + GIAG E+G +P A + G
Sbjct: 364 FPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRG 423
Query: 548 A--ELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTP----PS----PPGAE-HGGG 596
A E G+ P P PG AP PG+ + G P PS P GA G
Sbjct: 424 ARGEPGGVGPIGP--PGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 481
Query: 597 PGLILLRFPAAPPPR-LQARP--AAPQTCAGCPGAHLEGGR 634
PG P P R L RP A PQ G GA E GR
Sbjct: 482 PG-----EPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGR 517
Score = 32.7 bits (73), Expect = 1.1
Identities = 48/160 (30%), Positives = 55/160 (34%), Gaps = 24/160 (15%)
Query: 485 ALLRCGSNRTLRGGGTGQKW-PGV------PLGARTGLGAGVRQHPGGIAGLSRERGHSP 537
A+LRC + G GQK PG P G G Q P G G E+G
Sbjct: 19 AVLRCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKG--- 75
Query: 538 WAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGP 597
A G P P PG P P PG G A + E GG
Sbjct: 76 -------APGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA---AQMAGGFDEKAGGA 125
Query: 598 GLILLRFPAAP-PPRLQARPA---APQTCAGCPGAHLEGG 633
L +++ P P PR PA PQ G PG E G
Sbjct: 126 QLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG 165
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 47.8 bits (112), Expect = 3e-05
Identities = 45/124 (36%), Positives = 47/124 (37%), Gaps = 9/124 (7%)
Query: 510 GARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRP 569
G G AGV + G A S P L G L G A RRPGSA PR
Sbjct: 123 GTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSL-GAGSRALRRPGSAALPRS 181
Query: 570 LRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPA-APQTCAGCPGA 628
R A A PG PGA G PG + F A PP A A P AG P A
Sbjct: 182 PSSSRRWA--AMPG-----PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA 234
Query: 629 HLEG 632
G
Sbjct: 235 AFRG 238
Score = 33.9 bits (76), Expect = 0.48
Identities = 34/118 (28%), Positives = 43/118 (36%), Gaps = 6/118 (5%)
Query: 341 AQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPGP----GANSSLREGRT 396
A+ A GR G GPP A G ++ PG S G GA ++ G
Sbjct: 88 ARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTR 147
Query: 397 SPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKG 454
S RLP + A + +A LP S PS W + P P P G G
Sbjct: 148 SVPARRLPPPCGGTSLGAGSRALRRPGSAALPRS--PSSSRRWAAMPGPGAPRPGAPG 203
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 47.8 bits (112), Expect = 3e-05
Identities = 75/323 (23%), Positives = 99/323 (30%), Gaps = 47/323 (14%)
Query: 302 GGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQ-PEDAGGRAPGEEGPPRLA 360
G G +GG D T + S P + + P GG PGE GP
Sbjct: 1768 GASGMAGTTGGVDAATTGAASENTSER-----AGTPRVSGETPAVGGGSTPGEAGPGATV 1822
Query: 361 VGLRASSCPIILDPPGKLGTSLPG--PGANSSLREGRTSPSRPRLPQSPEHQQVSACTAT 418
G S I PG TS G G+T + S V+ +
Sbjct: 1823 SGSTGVSAGSITASPGASATSSESSKSGTTGPSVGGKTGATSSEATSSEGMSGVTGQSLG 1882
Query: 419 WPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTG 478
+ +E+ A S +G S+PP P S G EW +
Sbjct: 1883 STAGSDSEITAKTSFTG-----SSPPGKLTRPSPGSPGHFSGGTTEWGNVATTGAAGENT 1937
Query: 479 QGCSG------QALLRCGSNRTLRGGGTGQKWPG---------VPLGARTGLGAGVRQHP 523
G G +A GS T GTG PG V GA G
Sbjct: 1938 SGALGSTEGSVEATTSAGSGNTAGTSGTGDTGPGNTAVSGTPVVSPGATPGAPGSSTPGE 1997
Query: 524 GGIA----GLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQS 579
I G S + GH L P + P ++T P+ A +
Sbjct: 1998 ADIGNTSFGKSGKSGHDSLTVLN--------PAFLRRTPTVSAASTTSSPVSKHTDAASA 2049
Query: 580 -------AEPGTPPSPPGAEHGG 595
++PGTP +P GA GG
Sbjct: 2050 TAVTISGSKPGTPGTPGGATSGG 2072
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 46.6 bits (109), Expect = 7e-05
Identities = 66/280 (23%), Positives = 88/280 (31%), Gaps = 48/280 (17%)
Query: 202 TPQVHGPQCPLPWP--EPPAHPAVLWRGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVV 259
TPQ + PL P A + RGE P PP + Q
Sbjct: 264 TPQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPP------------IQQPTP 311
Query: 260 GSHPAKHPLFLAREDACTP---EVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGGPDTL 316
G PA+ P + + G+ + ++P + P G P GP
Sbjct: 312 GKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKP 371
Query: 317 TPNSPSSFLPSSFLLCLLPAPLTAAQPEDAG---GRAPGEEGPPRLAVGLRA-------- 365
S PSS P P AQP G + PG PP VG
Sbjct: 372 PAQQTGSEKPSSEQ----PGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGL 427
Query: 366 ---------SSCPIILDPPGKLGTSLPGPGANSSLREGRTS-PSRPRLPQSPEHQQVSAC 415
+ P+ PGK+ GPG S+ + G T PS+ P P QQ
Sbjct: 428 QSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPG-- 485
Query: 416 TATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGP 455
P+ + P S P + PPP +P P
Sbjct: 486 ----PAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSP 521
Score = 34.3 bits (77), Expect = 0.37
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 514 GLGAGVRQHPGGIAGLSRERGH-SPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRV 572
G+G Q PG +++ G P A + A+ PG + ++PG P
Sbjct: 396 GVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAG 455
Query: 573 PGR-GAQSAEPGTPPSP-PGAEHGGGPGLILLRFPAAPPPRLQARPAAP 619
PG+ AQ P PPS PG PA PPP+ Q PA P
Sbjct: 456 PGKTSAQQTGPTKPPSQLPG--------------PAKPPPQ-QPGPAKP 489
Score = 33.1 bits (74), Expect = 0.81
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 548 AELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAA 607
++LPG P++PG A P P + S +PG+ PP PG PA
Sbjct: 471 SQLPGPAKPPPQQPGPAKPP-PQQPGSAKPPSQQPGSTKPPPQQ-----PG------PAK 518
Query: 608 PPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAGGDAQQ 645
P P+ +P + + + PG+ + P A AQQ
Sbjct: 519 PSPQ---QPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQ 553
Score = 29.6 bits (65), Expect = 9.0
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 548 AELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGG--------GPGL 599
A+ GL ++PG T P++ PG A+P P PP + G GP
Sbjct: 333 AQPSGLTKPLAQQPG--TVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKA 390
Query: 600 ILLRFPAAPPPRLQARPAAPQT 621
+ P Q PA P T
Sbjct: 391 LAQPPGVGKTPAQQPGPAKPPT 412
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 46.6 bits (109), Expect = 7e-05
Identities = 66/280 (23%), Positives = 88/280 (31%), Gaps = 48/280 (17%)
Query: 202 TPQVHGPQCPLPWP--EPPAHPAVLWRGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVV 259
TPQ + PL P A + RGE P PP + Q
Sbjct: 264 TPQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPP------------IQQPTP 311
Query: 260 GSHPAKHPLFLAREDACTP---EVKGINMDVCEEPASRTMPYCGGGGGSQPGVSGGPDTL 316
G PA+ P + + G+ + ++P + P G P GP
Sbjct: 312 GKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKP 371
Query: 317 TPNSPSSFLPSSFLLCLLPAPLTAAQPEDAG---GRAPGEEGPPRLAVGLRA-------- 365
S PSS P P AQP G + PG PP VG
Sbjct: 372 PAQQTGSEKPSSEQ----PGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGL 427
Query: 366 ---------SSCPIILDPPGKLGTSLPGPGANSSLREGRTS-PSRPRLPQSPEHQQVSAC 415
+ P+ PGK+ GPG S+ + G T PS+ P P QQ
Sbjct: 428 QSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPG-- 485
Query: 416 TATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGP 455
P+ + P S P + PPP +P P
Sbjct: 486 ----PAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSP 521
Score = 34.3 bits (77), Expect = 0.37
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 514 GLGAGVRQHPGGIAGLSRERGH-SPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRV 572
G+G Q PG +++ G P A + A+ PG + ++PG P
Sbjct: 396 GVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAG 455
Query: 573 PGR-GAQSAEPGTPPSP-PGAEHGGGPGLILLRFPAAPPPRLQARPAAP 619
PG+ AQ P PPS PG PA PPP+ Q PA P
Sbjct: 456 PGKTSAQQTGPTKPPSQLPG--------------PAKPPPQ-QPGPAKP 489
Score = 33.1 bits (74), Expect = 0.81
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 548 AELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAA 607
++LPG P++PG A P P + S +PG+ PP PG PA
Sbjct: 471 SQLPGPAKPPPQQPGPAKPP-PQQPGSAKPPSQQPGSTKPPPQQ-----PG------PAK 518
Query: 608 PPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAGGDAQQ 645
P P+ +P + + + PG+ + P A AQQ
Sbjct: 519 PSPQ---QPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQ 553
Score = 29.6 bits (65), Expect = 9.0
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 548 AELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGG--------GPGL 599
A+ GL ++PG T P++ PG A+P P PP + G GP
Sbjct: 333 AQPSGLTKPLAQQPG--TVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKA 390
Query: 600 ILLRFPAAPPPRLQARPAAPQT 621
+ P Q PA P T
Sbjct: 391 LAQPPGVGKTPAQQPGPAKPPT 412
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 46.6 bits (109), Expect = 7e-05
Identities = 106/438 (24%), Positives = 147/438 (33%), Gaps = 84/438 (19%)
Query: 215 PEPPAHPAVLWRGECGVNQGPRAPTPPGSLAGCWAHLDEVLQQVVGSHPAKHPLFLARED 274
P+ PA PA +GE +G + P GS + L S P K PL
Sbjct: 565 PKAPASPAERRKGE----RGEKQRKPGGSSWKTFFALGRG-----PSVPRKKPLPWLGGT 615
Query: 275 ACTPEVKGINMDVCEEPASRTMPYCGG--GGGSQPGVSGGPDTLTPN---SPSSFLPSSF 329
P+ G D ++++ G G G P + TP SP L
Sbjct: 616 RAPPQPSGSRPDTVTLRSAKSEESLSSQASGAELLGAGGAPASATPTPALSPGRSLRPHL 675
Query: 330 LLCLL---PAPLTAAQPEDAGGRAPGEEGP-----------PRLAVGLRASSCPIILDPP 375
+ LL APLT A ++ + G +GP P L++ LR P PP
Sbjct: 676 IPLLLRGAEAPLTDACQQEMCSKLRGAQGPLGPDMESPLPPPPLSL-LRPGGAP---PPP 731
Query: 376 GKLGTSLPGPGANSSLREGRTSPSR------PRLPQSPEHQQVSACTATWPSCRAAELPA 429
K L ++ S+ P QSP H+ +S P + P
Sbjct: 732 PKNPARLMALALAERAQQVAEQQSQQECGGTPPASQSPFHRSLSLEVGGEPLGTSGSGPP 791
Query: 430 SDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRC 489
+S + G W+ PPPY P + G RS + R G G A +
Sbjct: 792 PNSLAHPGAWVPGPPPYLPRQQSDGSLLRSQRPMGTSRR-----------GLRGPAQV-- 838
Query: 490 GSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAE 549
+ LR GG G+ P + + + V PG + RE G
Sbjct: 839 --SAQLRAGGGGRDAPEAAAQSPCSVPSQV-PTPGFFSPAPRE--------CLPPFLGVP 887
Query: 550 LPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSP----------PGAEHG---GG 596
PGL P P ++P P+ G PP+P GA G G
Sbjct: 888 KPGLYPLGP-PSFQPSSPAPVWRSSLG--------PPAPLDRGENLYYEIGASEGSPYSG 938
Query: 597 PGLILLRFPAAPPPRLQA 614
P F + PP RL A
Sbjct: 939 PTRSWSPFRSMPPDRLNA 956
>gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]
Length = 581
Score = 46.2 bits (108), Expect = 9e-05
Identities = 56/193 (29%), Positives = 72/193 (37%), Gaps = 41/193 (21%)
Query: 443 PPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQ 502
PPP P + L GP+R+ ++ S L RT + C+G GS G GTG+
Sbjct: 192 PPPPGPLRPLAGPSRKG------SFKIRLSRLFRT-KSCNG------GSGG---GDGTGK 235
Query: 503 KWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPG 562
+ P G A + GG AG + G P T SA V +P G
Sbjct: 236 R----PSGELAASAASLTDM-GGSAGRELDAGRKPKLTRTQSAFSP-----VSFSPLFTG 285
Query: 563 SATAPRPLRVPGRGAQSAEPGTPPSPPGAE-------HGGGP--------GLILLRFPAA 607
+ + + RG S P TPP PP G P G L FP
Sbjct: 286 ETVSLVDVDISQRGLTSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLP 345
Query: 608 PPPRLQARPAAPQ 620
PPP A A P+
Sbjct: 346 PPPPPHAPDAFPR 358
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 45.8 bits (107), Expect = 1e-04
Identities = 75/288 (26%), Positives = 99/288 (34%), Gaps = 54/288 (18%)
Query: 200 RGTPQVHG-PQCPLPWPEPPAHPAVLWR--GECGVNQGP---------RAPTPPGSLAGC 247
RG+P V G P+ P P P PP P G + Q P R P PP
Sbjct: 201 RGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRA- 259
Query: 248 WAHLDEVLQQV---VGSHPAKHPLFLAREDACTPEVKGINMDV--CEEPASRTMPYCGGG 302
LD+ VG+ P+ H RE P + V P++ +
Sbjct: 260 ---LDDKPPPPPPPVGNRPSIH-----REAVPPPPPQNNKPPVPSTPRPSASSQAPPPPP 311
Query: 303 GGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVG 362
S+PG P + + N + LP L P + P E PP
Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPP----- 366
Query: 363 LRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSC 422
P + DPPG+ G P P + R G TS + P PQ P V S
Sbjct: 367 ------PPVRDPPGRSGPLPPPPPVS---RNGSTSRALPATPQLPSRSGVD-------SP 410
Query: 423 RAAELP--ASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSR 468
R+ P D PS PPP P+ ++ + S EW SR
Sbjct: 411 RSGPRPPLPPDRPSA-----GAPPPPPPSTSIRNGFQDSPCEDEWESR 453
Score = 43.9 bits (102), Expect = 5e-04
Identities = 89/357 (24%), Positives = 115/357 (32%), Gaps = 67/357 (18%)
Query: 300 GGGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRL 359
GGGGG G GG L F + TA + D+GG P P L
Sbjct: 75 GGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRP-----PLL 129
Query: 360 AVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATW 419
G R++S P G +P PG R G P R R+P P S +
Sbjct: 130 PPGGRSTSAKPFSPPSGPGRFPVPSPGH----RSGPPEPQRNRMP-PPRPDVGSKPDSIP 184
Query: 420 PSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPT------RRSLGLLEWRSRLACSN 473
P + P SP G S P P P + GPT R L R +
Sbjct: 185 PPVPSTPRPIQSSPHNRG---SPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIR---QS 238
Query: 474 LLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRER 533
L + S + L +R L P P+G R + H + +
Sbjct: 239 PLSSSSPFSNRPPLPPTPSRAL---DDKPPPPPPPVGNRPSI------HREAVPPPPPQN 289
Query: 534 GHSPWAALTDSAAGAEL---------PGLVPSAPRRPGSATAPR-------------PLR 571
P + +A ++ PG P P G+ PR PL
Sbjct: 290 NKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLP 349
Query: 572 VPGR-GAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRL-------QARPAAPQ 620
PGR G P P PP + G G P PPP + +A PA PQ
Sbjct: 350 SPGRSGPLPPPPSERPPPPVRDPPGRSG------PLPPPPPVSRNGSTSRALPATPQ 400
Score = 38.1 bits (87), Expect = 0.025
Identities = 37/117 (31%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 508 PLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAG----AELPGLVPSAPRRPGS 563
P GA G G G GG G G + G A +P L +A R S
Sbjct: 62 PKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDS 121
Query: 564 ATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQ 620
+ PL PG + SA+P +PPS PG RFP P P ++ P PQ
Sbjct: 122 GGSRPPLLPPGGRSTSAKPFSPPSGPG------------RFP-VPSPGHRSGPPEPQ 165
Score = 30.8 bits (68), Expect = 4.0
Identities = 39/150 (26%), Positives = 53/150 (35%), Gaps = 10/150 (6%)
Query: 482 SGQALLRCGSNRTLRGGGT--------GQKWPGVPLGARTGLGAGVRQHPGGIAGLSR-E 532
+G LR +NR GG+ G+ P +G G PG +G +
Sbjct: 106 AGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQ 165
Query: 533 RGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLR-VPGRGAQSAEPGTPPSPPGA 591
R P + +P VPS PR S+ R VPG Q + TPP PG
Sbjct: 166 RNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGN 225
Query: 592 EHGGGPGLILLRFPAAPPPRLQARPAAPQT 621
G + + P + RP P T
Sbjct: 226 RGTALGGGSIRQSPLSSSSPFSNRPPLPPT 255
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 45.8 bits (107), Expect = 1e-04
Identities = 75/288 (26%), Positives = 99/288 (34%), Gaps = 54/288 (18%)
Query: 200 RGTPQVHG-PQCPLPWPEPPAHPAVLWR--GECGVNQGP---------RAPTPPGSLAGC 247
RG+P V G P+ P P P PP P G + Q P R P PP
Sbjct: 201 RGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRA- 259
Query: 248 WAHLDEVLQQV---VGSHPAKHPLFLAREDACTPEVKGINMDV--CEEPASRTMPYCGGG 302
LD+ VG+ P+ H RE P + V P++ +
Sbjct: 260 ---LDDKPPPPPPPVGNRPSIH-----REAVPPPPPQNNKPPVPSTPRPSASSQAPPPPP 311
Query: 303 GGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVG 362
S+PG P + + N + LP L P + P E PP
Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPP----- 366
Query: 363 LRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSC 422
P + DPPG+ G P P + R G TS + P PQ P V S
Sbjct: 367 ------PPVRDPPGRSGPLPPPPPVS---RNGSTSRALPATPQLPSRSGVD-------SP 410
Query: 423 RAAELP--ASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSR 468
R+ P D PS PPP P+ ++ + S EW SR
Sbjct: 411 RSGPRPPLPPDRPSA-----GAPPPPPPSTSIRNGFQDSPCEDEWESR 453
Score = 43.9 bits (102), Expect = 5e-04
Identities = 89/357 (24%), Positives = 115/357 (32%), Gaps = 67/357 (18%)
Query: 300 GGGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRL 359
GGGGG G GG L F + TA + D+GG P P L
Sbjct: 75 GGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRP-----PLL 129
Query: 360 AVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATW 419
G R++S P G +P PG R G P R R+P P S +
Sbjct: 130 PPGGRSTSAKPFSPPSGPGRFPVPSPGH----RSGPPEPQRNRMP-PPRPDVGSKPDSIP 184
Query: 420 PSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPT------RRSLGLLEWRSRLACSN 473
P + P SP G S P P P + GPT R L R +
Sbjct: 185 PPVPSTPRPIQSSPHNRG---SPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIR---QS 238
Query: 474 LLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRER 533
L + S + L +R L P P+G R + H + +
Sbjct: 239 PLSSSSPFSNRPPLPPTPSRAL---DDKPPPPPPPVGNRPSI------HREAVPPPPPQN 289
Query: 534 GHSPWAALTDSAAGAEL---------PGLVPSAPRRPGSATAPR-------------PLR 571
P + +A ++ PG P P G+ PR PL
Sbjct: 290 NKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLP 349
Query: 572 VPGR-GAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRL-------QARPAAPQ 620
PGR G P P PP + G G P PPP + +A PA PQ
Sbjct: 350 SPGRSGPLPPPPSERPPPPVRDPPGRSG------PLPPPPPVSRNGSTSRALPATPQ 400
Score = 38.1 bits (87), Expect = 0.025
Identities = 37/117 (31%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 508 PLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAG----AELPGLVPSAPRRPGS 563
P GA G G G GG G G + G A +P L +A R S
Sbjct: 62 PKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDS 121
Query: 564 ATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQ 620
+ PL PG + SA+P +PPS PG RFP P P ++ P PQ
Sbjct: 122 GGSRPPLLPPGGRSTSAKPFSPPSGPG------------RFP-VPSPGHRSGPPEPQ 165
Score = 30.8 bits (68), Expect = 4.0
Identities = 39/150 (26%), Positives = 53/150 (35%), Gaps = 10/150 (6%)
Query: 482 SGQALLRCGSNRTLRGGGT--------GQKWPGVPLGARTGLGAGVRQHPGGIAGLSR-E 532
+G LR +NR GG+ G+ P +G G PG +G +
Sbjct: 106 AGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQ 165
Query: 533 RGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLR-VPGRGAQSAEPGTPPSPPGA 591
R P + +P VPS PR S+ R VPG Q + TPP PG
Sbjct: 166 RNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGN 225
Query: 592 EHGGGPGLILLRFPAAPPPRLQARPAAPQT 621
G + + P + RP P T
Sbjct: 226 RGTALGGGSIRQSPLSSSSPFSNRPPLPPT 255
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 45.8 bits (107), Expect = 1e-04
Identities = 94/340 (27%), Positives = 117/340 (34%), Gaps = 65/340 (19%)
Query: 297 PYCGGGGGSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGG-----RAP 351
P GGGG Q + GP P P LP +P+D G R P
Sbjct: 641 PLHQGGGGPQGFM--GPQG--PQGPPQGLP---------------RPQDMHGPQGMQRHP 681
Query: 352 GEEGP--PRLAVGLRASSCPI----ILDPPGKLGTSLPG--PGANSSL-------REGRT 396
G GP P+ G + SS P PPG G P PG L +G
Sbjct: 682 GPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQ 741
Query: 397 SPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSP-SGWGT-WLSTPPPYKPNKG--- 451
P PR Q P H P + + P S P G + PP + N+G
Sbjct: 742 GPPGPRGMQGPPHPHG---IQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRENQGPAP 798
Query: 452 -----------LKGPTRRSLGLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGT 500
++GP L + +R QG Q + G + LRG
Sbjct: 799 QGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSM-LGPPQELRGPPG 857
Query: 501 GQKWPGVPLGARTGLGAGVRQHPGGIAGLSRE-RG-HSPWAALTDSAAGAELPGLVPSAP 558
Q G P G+ G Q P G G RG H + L G P AP
Sbjct: 858 SQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPLLGDGPRAP 917
Query: 559 -RRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGP 597
+ G +T P PL +PG G Q A+ PP PG G GP
Sbjct: 918 FNQEGQSTGPPPL-IPGLGQQGAQGRIPPLNPG--QGPGP 954
>gi|239754641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 45.4 bits (106), Expect = 2e-04
Identities = 62/209 (29%), Positives = 77/209 (36%), Gaps = 29/209 (13%)
Query: 326 PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPG- 384
P +FLL L PA + G R P R R CP L PP L P
Sbjct: 30 PVNFLLTLSPACRPRPRCSAEGWRRCWRRSPRRS----RRRRCPQSLQPPPSLRPRCPRR 85
Query: 385 PGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSG-----WGTW 439
PG +GR SP P LP S S W S AA PA +P+G W T
Sbjct: 86 PG---QCNDGRGSP--PALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRT- 139
Query: 440 LSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQG---CSGQALLRCGSNRTLR 496
++ PPP +P + S+G + L G G C +A R R
Sbjct: 140 VARPPPGRPATPGDRKSGESVG----------TELPVKGPGRWRCPVEAGSGFRRLRRRR 189
Query: 497 GGGTGQKWPGVPLGARTGLGAGVRQHPGG 525
G G + LG +G G G + GG
Sbjct: 190 PGFPGPRHWEAGLGKGSGRGGGDAETSGG 218
>gi|239749183 PREDICTED: hypothetical protein XP_002346949 [Homo
sapiens]
Length = 229
Score = 45.4 bits (106), Expect = 2e-04
Identities = 62/209 (29%), Positives = 77/209 (36%), Gaps = 29/209 (13%)
Query: 326 PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPG- 384
P +FLL L PA + G R P R R CP L PP L P
Sbjct: 30 PVNFLLTLSPACRPRPRCSAEGWRRCWRRSPRRS----RRRRCPQSLQPPPSLRPRCPRR 85
Query: 385 PGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSG-----WGTW 439
PG +GR SP P LP S S W S AA PA +P+G W T
Sbjct: 86 PG---QCNDGRGSP--PALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRT- 139
Query: 440 LSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQG---CSGQALLRCGSNRTLR 496
++ PPP +P + S+G + L G G C +A R R
Sbjct: 140 VARPPPGRPATPGDRKSGESVG----------TELPVKGPGRWRCPVEAGSGFRRLRRRR 189
Query: 497 GGGTGQKWPGVPLGARTGLGAGVRQHPGG 525
G G + LG +G G G + GG
Sbjct: 190 PGFPGPRHWEAGLGKGSGRGGGDAETSGG 218
>gi|239743263 PREDICTED: hypothetical protein XP_002342813 [Homo
sapiens]
Length = 229
Score = 45.4 bits (106), Expect = 2e-04
Identities = 62/209 (29%), Positives = 77/209 (36%), Gaps = 29/209 (13%)
Query: 326 PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPG- 384
P +FLL L PA + G R P R R CP L PP L P
Sbjct: 30 PVNFLLTLSPACRPRPRCSAEGWRRCWRRSPRRS----RRRRCPQSLQPPPSLRPRCPRR 85
Query: 385 PGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSG-----WGTW 439
PG +GR SP P LP S S W S AA PA +P+G W T
Sbjct: 86 PG---QCNDGRGSP--PALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRT- 139
Query: 440 LSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQG---CSGQALLRCGSNRTLR 496
++ PPP +P + S+G + L G G C +A R R
Sbjct: 140 VARPPPGRPATPGDRKSGESVG----------TELPVKGPGRWRCPVEAGSGFRRLRRRR 189
Query: 497 GGGTGQKWPGVPLGARTGLGAGVRQHPGG 525
G G + LG +G G G + GG
Sbjct: 190 PGFPGPRHWEAGLGKGSGRGGGDAETSGG 218
>gi|239508944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 45.4 bits (106), Expect = 2e-04
Identities = 62/209 (29%), Positives = 77/209 (36%), Gaps = 29/209 (13%)
Query: 326 PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPIILDPPGKLGTSLPG- 384
P +FLL L PA + G R P R R CP L PP L P
Sbjct: 30 PVNFLLTLSPACRPRPRCSAEGWRRCWRRSPRRS----RRRRCPQSLQPPPSLRPRCPRR 85
Query: 385 PGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPSCRAAELPASDSPSG-----WGTW 439
PG +GR SP P LP S S W S AA PA +P+G W T
Sbjct: 86 PG---QCNDGRGSP--PALPSSTWRTTWSCIRCRWASGPAAWWPARAAPAGAETREWRT- 139
Query: 440 LSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQG---CSGQALLRCGSNRTLR 496
++ PPP +P + S+G + L G G C +A R R
Sbjct: 140 VARPPPGRPATPGDRKSGESVG----------TELPVKGPGRWRCPVEAGSGFRRLRRRR 189
Query: 497 GGGTGQKWPGVPLGARTGLGAGVRQHPGG 525
G G + LG +G G G + GG
Sbjct: 190 PGFPGPRHWEAGLGKGSGRGGGDAETSGG 218
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.1 bits (105), Expect = 2e-04
Identities = 82/328 (25%), Positives = 106/328 (32%), Gaps = 59/328 (17%)
Query: 304 GSQPGVSGGPDTLTPNSPSSFLPSSFLLCLLPAPLTAAQPEDAGGRAPGEEGP--PRLAV 361
GS G +G P +P+ P + P P A+P G + PG P P +
Sbjct: 65 GSPAGAAGAG----PAAPAEGAPGA---APEPPPAGRARPGGGGPQRPGPPSPRRPLVPA 117
Query: 362 GLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVSACTATWPS 421
G + + P G G+ P P A + +P+ P P P +A A
Sbjct: 118 GPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGP-----AALAA---- 168
Query: 422 CRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRTGQGC 481
RA P G G P P KP GP Q
Sbjct: 169 -RAGPGPGPGPGPGPG-----PGPGKP----AGPG--------------------AAQTL 198
Query: 482 SGQALLRCGSNRTLRGGGTGQKWPG--VPLGARTGLGAGVRQHPG-GIAGLSRERGHSPW 538
+G A L + P +PL G ++ P G A SP
Sbjct: 199 NGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPP 258
Query: 539 AALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPG 598
AA +A A P P P AT RP P G +A P PP P A++GG G
Sbjct: 259 AAPAPAAPAAAPP------PPPPAPATLARPPGHPA-GPPTAAPAVPP-PAAAQNGGSAG 310
Query: 599 LILLRFPAAPPPRLQARPAAPQTCAGCP 626
PAA P + P A P
Sbjct: 311 AAPAPAPAAGGPAGVSGQPGPGAAAAAP 338
Score = 43.9 bits (102), Expect = 5e-04
Identities = 89/351 (25%), Positives = 113/351 (32%), Gaps = 52/351 (14%)
Query: 291 PASRTMPYCGGGGGSQPGVSGGPDTLTPNSPSSFL------PSSFLLCLLPAPLTAAQPE 344
PA R P GGGG +PG L P P+ P P P AA
Sbjct: 91 PAGRARP--GGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAV-- 146
Query: 345 DAGGRAPGEEGPPR----LAVGLRASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSR 400
A G P GP + A+ RA P PG PGPG G
Sbjct: 147 -AAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPG------PGPGPGKPAGPGAAQTLN 199
Query: 401 PRLPQSPEHQQVSACTATWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSL 460
H + + + AA LP P+ GT + TP P G P +
Sbjct: 200 GSAALLNSHHAAAPAVSLVNNGPAALLPL-PKPAAPGTVIQTP----PFVGAAAPPAPAA 254
Query: 461 GLLEWRSRLACSNLLRTGQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVR 520
A + L R + G T P A+ G AG
Sbjct: 255 PSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPA--GPPTAAPAVPPPAAAQNGGSAGAA 312
Query: 521 QHP----GGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAP--RPLRVPG 574
P GG AG+S + G +AA A PG+ +P+R A P + L G
Sbjct: 313 PAPAPAAGGPAGVSGQPG-------PGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 365
Query: 575 RGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAA-PQTCAG 624
+ +A P+ GA L PAA PP P P+ AG
Sbjct: 366 PASTAASMVIGPTMQGA----------LPSPAAVPPPAPGTPTGLPKGAAG 406
Score = 41.6 bits (96), Expect = 0.002
Identities = 76/297 (25%), Positives = 91/297 (30%), Gaps = 75/297 (25%)
Query: 365 ASSCPIILDPPGKLGTSLPGPGANSSLREGRTSPSRPRLPQSPEHQQVS-------ACTA 417
A P P G + PG G R G SP RP +P P + +
Sbjct: 79 AEGAPGAAPEPPPAGRARPGGGGPQ--RPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGS 136
Query: 418 TWPSCRAAELPASDSPSGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACSNLLRT 477
P AA + A P+ G P KP GP + R
Sbjct: 137 CAPVPAAAAVAAGPEPAPAG-------PAKP----AGPAALAA---------------RA 170
Query: 478 GQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGL-SRERGHS 536
G G G G G PG G G G Q G A L + +
Sbjct: 171 GPG---------------PGPGPG---PGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAA 212
Query: 537 PWAALTDSAAGAELPGLVPSAP------------RRPGSATAPRPLRVPGRGAQSAEPGT 584
P +L ++ A LP P+AP P + AP P P A +A P
Sbjct: 213 PAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPP 272
Query: 585 PPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQTCAGCPGAHLEGGRLPDVAGG 641
PP P A PG PA PP A PA P A G P A G
Sbjct: 273 PPPAP-ATLARPPG-----HPAGPP---TAAPAVPPPAAAQNGGSAGAAPAPAPAAG 320
Score = 37.0 bits (84), Expect = 0.056
Identities = 37/126 (29%), Positives = 45/126 (35%), Gaps = 5/126 (3%)
Query: 505 PGVPLGARTGLGAGVRQ-HPGGIAGL--SRERGHSPWAALTDSAAGAELPGLVPSAPRRP 561
P V A LG V P G AG + +P AA AG PG P+RP
Sbjct: 48 PEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPG--GGGPQRP 105
Query: 562 GSATAPRPLRVPGRGAQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPAAPQT 621
G + RPL G +A+ PP P + P P A+PA P
Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAA 165
Query: 622 CAGCPG 627
A G
Sbjct: 166 LAARAG 171
Score = 35.0 bits (79), Expect = 0.21
Identities = 39/137 (28%), Positives = 45/137 (32%), Gaps = 21/137 (15%)
Query: 506 GVPLGARTGLGAGVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSAT 565
G P GA GAG G G + E P G + PG P +PRRP
Sbjct: 65 GSPAGAA---GAGPAAPAEGAPGAAPEP--PPAGRARPGGGGPQRPG--PPSPRRPLVPA 117
Query: 566 APRP----LRVPGRG----------AQSAEPGTPPSPPGAEHGGGPGLILLRFPAAPPPR 611
P P LR P G A + G P+P G GP + R P P
Sbjct: 118 GPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPG 177
Query: 612 LQARPAAPQTCAGCPGA 628
P PGA
Sbjct: 178 PGPGPGPGPGKPAGPGA 194
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 44.7 bits (104), Expect = 3e-04
Identities = 83/329 (25%), Positives = 112/329 (34%), Gaps = 50/329 (15%)
Query: 306 QPGVSGGPDTLTPNSPSSFL----PSSFLLCLLPAPLTAAQPEDAGGRAPGEEGPPRLAV 361
QP +S GP T +PS L P + L + AA R P P +V
Sbjct: 93 QPTISEGPGTSVLPTPSEGLSTSGPPTISKGLCTSVTLAASEGRNTSRPPTSSEEPSTSV 152
Query: 362 GLRASSCPIILDPPGKLGTSLPGPGANSSLRE-GRTSPSRPRLPQSPEHQQVSACTATWP 420
AS P PP PG G ++S+ PS +P E S
Sbjct: 153 PPTASEVPSTSLPP------TPGEGTSTSVPPTAYEGPSTSVVPTPDEGPSTSVLPTP-- 204
Query: 421 SCRAAELPASDSPSGWGTWLSTPPPYKPNKG--LKGPTRRSLGLLE----WRSRLACSNL 474
E P + P LST P++G P + GL R +++
Sbjct: 205 ----GEGPGTSVPLAATEGLSTSVQATPDEGPSTSVPPTATEGLSTPVPPTRDEGPSTSV 260
Query: 475 LRT-GQGCSGQALLRCGSNRTL-----RGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAG 528
T G+G S L +++ RG G+ VP A GL V+ G G
Sbjct: 261 PATPGEGPSTSVLPAASDGQSISLVPTRGKGSSTS---VPPTATEGLSTSVQPTAG--EG 315
Query: 529 LSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGT---- 584
S +P L+ S L S P PG + L +PG G ++ P T
Sbjct: 316 SSTSVPPTPGGGLSTSVPPTATEELSTSVPPTPGEGPSTSVLPIPGEGLSTSVPPTASDG 375
Query: 585 -----PPSPPGAEHGGGPGLILLRFPAAP 608
PP+P G G L P AP
Sbjct: 376 SDTSVPPTP-------GEGASTLVQPTAP 397
Score = 44.3 bits (103), Expect = 4e-04
Identities = 81/330 (24%), Positives = 116/330 (35%), Gaps = 56/330 (16%)
Query: 313 PDTLTPNSPSSFLPSSFL--LCLLPAPLTAAQPEDAGGRAPGEEGPPRLAVGLRASSCPI 370
P + P PS S L LC P T+ P A G P PP ++ AS P
Sbjct: 41 PGSDVPQGPSD---SQILQGLCASEGPSTSVLPTSAEG--PSTFVPPTISEASSASGQPT 95
Query: 371 ILDPPGKLGTSLPGPGANSS----------------LREGRTSPSRPRLPQSPEHQQVSA 414
I + PG P G ++S EGR + SRP P S E S
Sbjct: 96 ISEGPGTSVLPTPSEGLSTSGPPTISKGLCTSVTLAASEGRNT-SRP--PTSSEEPSTSV 152
Query: 415 CTATWPSCRAAELPASDSP--SGWGTWLSTPPPYKPNKGLKGPTRRSLGLLEWRSRLACS 472
A+E+P++ P G GT S PP +GP S ++ +
Sbjct: 153 PPT------ASEVPSTSLPPTPGEGTSTSVPP-----TAYEGP---STSVVPTPDEGPST 198
Query: 473 NLLRT-GQGCSGQALLRCGSNRTLRGGGTGQKWP--GVPLGARTGLGAGV--RQHPGGIA 527
++L T G+G L + T + P VP A GL V + G
Sbjct: 199 SVLPTPGEGPGTSVPLAATEGLSTSVQATPDEGPSTSVPPTATEGLSTPVPPTRDEGPST 258
Query: 528 GLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPG-------RGAQSA 580
+ G P ++ +A+ + LVP+ R GS+T+ P G + +
Sbjct: 259 SVPATPGEGPSTSVLPAASDGQSISLVPT--RGKGSSTSVPPTATEGLSTSVQPTAGEGS 316
Query: 581 EPGTPPSPPGAEHGGGPGLILLRFPAAPPP 610
PP+P G P + PP
Sbjct: 317 STSVPPTPGGGLSTSVPPTATEELSTSVPP 346
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,840,132
Number of Sequences: 37866
Number of extensions: 2664159
Number of successful extensions: 15210
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 1050
Number of HSP's that attempted gapping in prelim test: 11297
Number of HSP's gapped (non-prelim): 4263
length of query: 645
length of database: 18,247,518
effective HSP length: 109
effective length of query: 536
effective length of database: 14,120,124
effective search space: 7568386464
effective search space used: 7568386464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.