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Search of human proteins with 169173314
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169173314 PREDICTED: hypothetical protein LOC286177 [Homo
sapiens]
(287 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169173314 PREDICTED: hypothetical protein LOC286177 [Homo sap... 603 e-173
gi|169172513 PREDICTED: hypothetical protein LOC286177 [Homo sap... 528 e-150
gi|169173083 PREDICTED: hypothetical protein LOC286177 [Homo sap... 528 e-150
gi|41281612 zinc finger protein 828 [Homo sapiens] 37 0.020
gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo sap... 35 0.058
gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo sa... 33 0.29
gi|4758392 forkhead box D1 [Homo sapiens] 33 0.29
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 33 0.38
gi|58530859 homocysteine-inducible, endoplasmic reticulum stress... 33 0.38
gi|58530857 homocysteine-inducible, endoplasmic reticulum stress... 33 0.38
gi|7661870 homocysteine-inducible, endoplasmic reticulum stress-... 33 0.38
gi|123701326 zinc finger protein 831 [Homo sapiens] 32 0.49
gi|169204628 PREDICTED: similar to hCG2045644 [Homo sapiens] 32 0.84
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 32 0.84
gi|47271475 SPOC domain containing 1 [Homo sapiens] 30 2.4
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 30 3.2
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 30 3.2
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 30 3.2
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 30 3.2
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 30 3.2
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 30 3.2
gi|169194607 PREDICTED: hypothetical protein [Homo sapiens] 29 4.2
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens] 29 4.2
gi|169192119 PREDICTED: hypothetical protein [Homo sapiens] 29 4.2
gi|118402596 cell division cycle protein 23 [Homo sapiens] 29 4.2
gi|239754542 PREDICTED: hypothetical protein [Homo sapiens] 29 5.4
gi|239749107 PREDICTED: hypothetical protein XP_002346912 [Homo ... 29 5.4
gi|239743136 PREDICTED: hypothetical protein XP_002342759 [Homo ... 29 5.4
gi|239508794 PREDICTED: hypothetical protein [Homo sapiens] 29 5.4
gi|171906553 zinc finger with KRAB and SCAN domains 3 [Homo sapi... 29 5.4
>gi|169173314 PREDICTED: hypothetical protein LOC286177 [Homo
sapiens]
Length = 287
Score = 603 bits (1556), Expect = e-173
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MPSRRLIQAVGLAAAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQG 60
MPSRRLIQAVGLAAAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQG
Sbjct: 1 MPSRRLIQAVGLAAAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQG 60
Query: 61 QTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPNFGRGCSCHLHAVPTRARLRAV 120
QTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPNFGRGCSCHLHAVPTRARLRAV
Sbjct: 61 QTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPNFGRGCSCHLHAVPTRARLRAV 120
Query: 121 SGHAQFVATRGAITFRGASARWGPMALLRIFLLREFGDVPLREAGGSLSETPDEDLEYPQ 180
SGHAQFVATRGAITFRGASARWGPMALLRIFLLREFGDVPLREAGGSLSETPDEDLEYPQ
Sbjct: 121 SGHAQFVATRGAITFRGASARWGPMALLRIFLLREFGDVPLREAGGSLSETPDEDLEYPQ 180
Query: 181 SCVQGNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEAPPSELGAWGV 240
SCVQGNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEAPPSELGAWGV
Sbjct: 181 SCVQGNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEAPPSELGAWGV 240
Query: 241 GARGGLERMECVGRAVLVPRALGFLPWQTPQRLRCGRLGGGGPKSSL 287
GARGGLERMECVGRAVLVPRALGFLPWQTPQRLRCGRLGGGGPKSSL
Sbjct: 241 GARGGLERMECVGRAVLVPRALGFLPWQTPQRLRCGRLGGGGPKSSL 287
>gi|169172513 PREDICTED: hypothetical protein LOC286177 [Homo
sapiens]
Length = 282
Score = 528 bits (1359), Expect = e-150
Identities = 262/289 (90%), Positives = 266/289 (92%), Gaps = 9/289 (3%)
Query: 1 MPSRRLIQAVGLAAAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQG 60
MPSRRLIQAVGLAAAAGLELAFSPIP LQPPPEYGGVSNWGNPGYFRDYYRGPQG
Sbjct: 1 MPSRRLIQAVGLAAAAGLELAFSPIP------LQPPPEYGGVSNWGNPGYFRDYYRGPQG 54
Query: 61 QTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPNFGRGCSCHLHAVPTRARLRAV 120
QTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPNFGRG S + R+ L
Sbjct: 55 QTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPNFGRGSS-RSSGLGLRSHLGPG 113
Query: 121 SGH--AQFVATRGAITFRGASARWGPMALLRIFLLREFGDVPLREAGGSLSETPDEDLEY 178
+ + FVATRGAITFRGASARWGPMALLRIFLLREFGDVPLREAGGSLSETPDEDLEY
Sbjct: 114 ADRTMSSFVATRGAITFRGASARWGPMALLRIFLLREFGDVPLREAGGSLSETPDEDLEY 173
Query: 179 PQSCVQGNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEAPPSELGAW 238
PQSCVQGNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEAPPSELGAW
Sbjct: 174 PQSCVQGNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEAPPSELGAW 233
Query: 239 GVGARGGLERMECVGRAVLVPRALGFLPWQTPQRLRCGRLGGGGPKSSL 287
GVGARGGLERMECVGRAVLVPRALGFLPWQTPQRLRCGRLGGGGPKSSL
Sbjct: 234 GVGARGGLERMECVGRAVLVPRALGFLPWQTPQRLRCGRLGGGGPKSSL 282
>gi|169173083 PREDICTED: hypothetical protein LOC286177 [Homo
sapiens]
Length = 282
Score = 528 bits (1359), Expect = e-150
Identities = 262/289 (90%), Positives = 266/289 (92%), Gaps = 9/289 (3%)
Query: 1 MPSRRLIQAVGLAAAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQG 60
MPSRRLIQAVGLAAAAGLELAFSPIP LQPPPEYGGVSNWGNPGYFRDYYRGPQG
Sbjct: 1 MPSRRLIQAVGLAAAAGLELAFSPIP------LQPPPEYGGVSNWGNPGYFRDYYRGPQG 54
Query: 61 QTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPNFGRGCSCHLHAVPTRARLRAV 120
QTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPNFGRG S + R+ L
Sbjct: 55 QTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPNFGRGSS-RSSGLGLRSHLGPG 113
Query: 121 SGH--AQFVATRGAITFRGASARWGPMALLRIFLLREFGDVPLREAGGSLSETPDEDLEY 178
+ + FVATRGAITFRGASARWGPMALLRIFLLREFGDVPLREAGGSLSETPDEDLEY
Sbjct: 114 ADRTMSSFVATRGAITFRGASARWGPMALLRIFLLREFGDVPLREAGGSLSETPDEDLEY 173
Query: 179 PQSCVQGNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEAPPSELGAW 238
PQSCVQGNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEAPPSELGAW
Sbjct: 174 PQSCVQGNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEAPPSELGAW 233
Query: 239 GVGARGGLERMECVGRAVLVPRALGFLPWQTPQRLRCGRLGGGGPKSSL 287
GVGARGGLERMECVGRAVLVPRALGFLPWQTPQRLRCGRLGGGGPKSSL
Sbjct: 234 GVGARGGLERMECVGRAVLVPRALGFLPWQTPQRLRCGRLGGGGPKSSL 282
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 37.0 bits (84), Expect = 0.020
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 24 PIPPLPWVQLQPPPEYGGVS--NW--GNPGYFRDYYRGPQGQTLPWRLSHAVATAAAGGW 79
P P P V +P VS +W G PG R + P + PW+ + + + G W
Sbjct: 289 PWKPFPAVSPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKPAKPAPSVSPGPW 348
Query: 80 KPVPS 84
KP+PS
Sbjct: 349 KPIPS 353
>gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo
sapiens]
Length = 304
Score = 35.4 bits (80), Expect = 0.058
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 8 QAVGLAAAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQ-GQTLPWR 66
+AV A +GL A + P PW Q+Q PPE+G PG +G GQ LP R
Sbjct: 153 RAVHSATLSGLGPA---LQPPPWTQVQLPPEHGTRQRGLQPGPCPCQQQGGYLGQKLPGR 209
Query: 67 LSHAV 71
LS V
Sbjct: 210 LSEGV 214
>gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo
sapiens]
Length = 938
Score = 33.1 bits (74), Expect = 0.29
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 91 ECPAPGTPNFGRGCSCHLHAVPTRARLRAVSGHAQFVATRGAITFRGASARWGPMALLRI 150
E PG P+ R CH H++ +A + RG A P++ L +
Sbjct: 687 EAAEPGGPHSSRNGLCH------------PLNHSRTLAGKRPKAPRGEEAHLPPVSDLTV 734
Query: 151 FLLREFGDVPLREAGGSLSETPDEDLEYPQSCVQGNAWKLQRSLL 195
EF + L+ G S+S+TPDE + + ++R LL
Sbjct: 735 ----EFDKLNLQNIGRSVSKTPDESTKTKDQILTSRINAVERDLL 775
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 33.1 bits (74), Expect = 0.29
Identities = 46/170 (27%), Positives = 59/170 (34%), Gaps = 51/170 (30%)
Query: 2 PSRRLIQAVGLAAAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQGQ 61
P L A AAAA AF P P P PPP +G + + Y P G
Sbjct: 287 PPSALFAAAAAAAAAA---AFHPHSPPP-----PPPPHGAAAELARTAF--GYRPHPLGA 336
Query: 62 TLPWRL----------------------------------SHAVATAAAGGWKPVPSPIL 87
LP L + A A AA + PSP
Sbjct: 337 ALPGPLPASAAKAGGPGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSP 396
Query: 88 VAAECPAPGTPNFGRGCSCHLHAVP----TRARLRAVSGHAQFVATRGAI 133
VAA PAPG+ G GC+ P TR+ + A + A V++ A+
Sbjct: 397 VAAP-PAPGSS--GGGCAAQAAVGPAAALTRSLVAAAAAAASSVSSSAAL 443
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 32.7 bits (73), Expect = 0.38
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 77 GGWKPVPSPILVAAECPAPGTPNFGRGCSCHLHAVPTRARLRAVSGHAQFVATR 130
GG P PSP A P PG+ S HA P RA L SGH + +R
Sbjct: 136 GGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHA-PARAALGTASGHRAGLTSR 188
>gi|58530859 homocysteine-inducible, endoplasmic reticulum
stress-inducible, ubiquitin-like domain member 1 isoform
3 [Homo sapiens]
Length = 366
Score = 32.7 bits (73), Expect = 0.38
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 24/85 (28%)
Query: 14 AAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVAT 73
A GL FS P W+QL +W Y R YY + + AT
Sbjct: 126 AFQGLGPGFSGYTPYGWLQL----------SWFQQIYARQYY-----------MQYLAAT 164
Query: 74 AAAGGWKPVPSP---ILVAAECPAP 95
AA+G + P PS +V+A PAP
Sbjct: 165 AASGAFVPPPSAQEIPVVSAPAPAP 189
>gi|58530857 homocysteine-inducible, endoplasmic reticulum
stress-inducible, ubiquitin-like domain member 1 isoform
2 [Homo sapiens]
Length = 390
Score = 32.7 bits (73), Expect = 0.38
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 24/85 (28%)
Query: 14 AAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVAT 73
A GL FS P W+QL +W Y R YY + + AT
Sbjct: 150 AFQGLGPGFSGYTPYGWLQL----------SWFQQIYARQYY-----------MQYLAAT 188
Query: 74 AAAGGWKPVPSP---ILVAAECPAP 95
AA+G + P PS +V+A PAP
Sbjct: 189 AASGAFVPPPSAQEIPVVSAPAPAP 213
>gi|7661870 homocysteine-inducible, endoplasmic reticulum
stress-inducible, ubiquitin-like domain member 1 isoform
1 [Homo sapiens]
Length = 391
Score = 32.7 bits (73), Expect = 0.38
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 24/85 (28%)
Query: 14 AAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVAT 73
A GL FS P W+QL +W Y R YY + + AT
Sbjct: 151 AFQGLGPGFSGYTPYGWLQL----------SWFQQIYARQYY-----------MQYLAAT 189
Query: 74 AAAGGWKPVPSP---ILVAAECPAP 95
AA+G + P PS +V+A PAP
Sbjct: 190 AASGAFVPPPSAQEIPVVSAPAPAP 214
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 32.3 bits (72), Expect = 0.49
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 177 EYPQSCVQ-GNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEAPPSE 234
E P C G A+K Q +L R+ Q+ + E G GLLEE + GE P E
Sbjct: 169 ERPFPCATCGIAFKTQSNLYKHRRTQTHLNNSRLSSESEGAGGGLLEEGDKAGEPPRPE 227
>gi|169204628 PREDICTED: similar to hCG2045644 [Homo sapiens]
Length = 363
Score = 31.6 bits (70), Expect = 0.84
Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 18/124 (14%)
Query: 13 AAAAGLELAFSPIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVA 72
A AG +A +P+P PW G GN FRD+ G+ R + +
Sbjct: 152 AGRAGGHVAGAPVPAAPWCMYLWRSSPLGSLITGNNQRFRDH----PGEN---RNIYIAS 204
Query: 73 TAAAGGWKPVPSPILVA--AECPAPGTPNFGRGCSCHLHAVPTRARLRAVSGHAQFVATR 130
G + +PSP L +C +PGT A RAR R S + A
Sbjct: 205 IPPLGVPQDMPSPGLAGRRGQCASPGTSR---------AAAAGRARARTGSPSSDVAAAA 255
Query: 131 GAIT 134
G IT
Sbjct: 256 GRIT 259
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 31.6 bits (70), Expect = 0.84
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 24 PIPPLPWVQLQPPPEYGGVSNWGNPGYFRD 53
P PP P L PPP G NWG PG + D
Sbjct: 403 PGPPAPKPPL-PPPHRGPAGNWGPPGDYPD 431
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 30.0 bits (66), Expect = 2.4
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 20/112 (17%)
Query: 23 SPIPPLPWVQLQPPPEYG--GVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVATAAAGGWK 80
+P P W Q Q G+S W P P+G+ W G W
Sbjct: 1062 TPPPGGAWQQSQGRGSIAPRGISAWQRP---------PRGRGRLWPEPENWQHPGRGQWP 1112
Query: 81 PVPSPILVAAECP---APGTPNFGRGCSCHLHAVPTRARLRAVSGHAQFVAT 129
P P L ++ P AP FGRG H + P +A LR H + +AT
Sbjct: 1113 PEPG--LRQSQHPYSVAPAGHGFGRGQHFHRDSCPHQALLR----HLESLAT 1158
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 29.6 bits (65), Expect = 3.2
Identities = 39/143 (27%), Positives = 51/143 (35%), Gaps = 22/143 (15%)
Query: 58 PQGQTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPNFGRGCSCHLHAVPTRARL 117
P TLP S A A AA P P+P + E PAPG RG + R L
Sbjct: 290 PPPLTLPPTPSPATAVTAASAQPPGPAP-PITLEPPAPG---LKRGREGGRASTRDRKML 345
Query: 118 RAVSGHAQFVATRGAITFRGASARWGPMALLRIFLLREFGDVPLREAGGSLSETPDEDLE 177
+ +SG + T+ G GP+ G L GS E
Sbjct: 346 KFISG----IFTKST----GGPPGSGPLP----------GPPSLSSGSGSRELLGAELRA 387
Query: 178 YPQSCVQGNAWKLQRSLLLKRKG 200
P++ + W L RS+ R G
Sbjct: 388 SPKAVINSQEWTLSRSIPELRLG 410
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 29.6 bits (65), Expect = 3.2
Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 24 PIPPLPWVQLQP-PPEYGGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVATAAAG----- 77
P P PW QP PP G + +P P T R S A AG
Sbjct: 75 PSPAHPWTTPQPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSRAG 134
Query: 78 GWKPVPSPILVAAECPAPGTPNFGRGCSCHLHAVP-TRARLRAVSGHAQFVATR 130
G + ++ P P P+ RG SC L P +RA + + G + TR
Sbjct: 135 GGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLGGRSARARTR 188
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 29.6 bits (65), Expect = 3.2
Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 24 PIPPLPWVQLQP-PPEYGGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVATAAAG----- 77
P P PW QP PP G + +P P T R S A AG
Sbjct: 75 PSPAHPWTTPQPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSRAG 134
Query: 78 GWKPVPSPILVAAECPAPGTPNFGRGCSCHLHAVP-TRARLRAVSGHAQFVATR 130
G + ++ P P P+ RG SC L P +RA + + G + TR
Sbjct: 135 GGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLGGRSARARTR 188
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 29.6 bits (65), Expect = 3.2
Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 24 PIPPLPWVQLQP-PPEYGGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVATAAAG----- 77
P P PW QP PP G + +P P T R S A AG
Sbjct: 75 PSPAHPWTTPQPGPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPTYCAGAGNSRAG 134
Query: 78 GWKPVPSPILVAAECPAPGTPNFGRGCSCHLHAVP-TRARLRAVSGHAQFVATR 130
G + ++ P P P+ RG SC L P +RA + + G + TR
Sbjct: 135 GGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLGGRSARARTR 188
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 29.6 bits (65), Expect = 3.2
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 24 PIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVATAAAGGWKPVP 83
P+PP Q QPPP S+ + LPW+ + T +AG P
Sbjct: 496 PLPPWQQQQQQPPPPPPPSSSMAS------------STPLPWQQNTTTTTTSAGTGSIPP 543
Query: 84 SPILVAAECPAPGTP 98
AA +PG P
Sbjct: 544 WQQQQAAAAASPGAP 558
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 29.6 bits (65), Expect = 3.2
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 24 PIPPLPWVQLQPPPEYGGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVATAAAGGWKPVP 83
P+PP Q QPPP S+ + LPW+ + T +AG P
Sbjct: 496 PLPPWQQQQQQPPPPPPPSSSMAS------------STPLPWQQNTTTTTTSAGTGSIPP 543
Query: 84 SPILVAAECPAPGTP 98
AA +PG P
Sbjct: 544 WQQQQAAAAASPGAP 558
>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 29.3 bits (64), Expect = 4.2
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 233 SELGAWGVGARGGLERMECVGRAVLVPRALGFLPWQTPQRLRC-GRLGGGG 282
S GA GV RG R R +L PR+ +P + P RL GR GGG
Sbjct: 179 SATGALGVHDRGSRGRRR---RRLLAPRSRCDIPRRAPHRLLAGGRAAGGG 226
>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 29.3 bits (64), Expect = 4.2
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 233 SELGAWGVGARGGLERMECVGRAVLVPRALGFLPWQTPQRLRC-GRLGGGG 282
S GA GV RG R R +L PR+ +P + P RL GR GGG
Sbjct: 179 SATGALGVHDRGSRGRRR---RRLLAPRSRCDIPRRAPHRLLAGGRAAGGG 226
>gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 29.3 bits (64), Expect = 4.2
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 233 SELGAWGVGARGGLERMECVGRAVLVPRALGFLPWQTPQRLRC-GRLGGGG 282
S GA GV RG R R +L PR+ +P + P RL GR GGG
Sbjct: 179 SATGALGVHDRGSRGRRR---RRLLAPRSRCDIPRRAPHRLLAGGRAAGGG 226
>gi|118402596 cell division cycle protein 23 [Homo sapiens]
Length = 597
Score = 29.3 bits (64), Expect = 4.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 4 RRLIQAVGLAAAAGL--------ELAFSPIPPLPWVQLQPPP 37
++L+ GL GL ELAFS +P LP +LQPPP
Sbjct: 34 KQLLLIAGLTRERGLLHSSKWSAELAFS-LPALPLAELQPPP 74
>gi|239754542 PREDICTED: hypothetical protein [Homo sapiens]
Length = 413
Score = 28.9 bits (63), Expect = 5.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 40 GGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPN 99
G + G G F+ + RG + + W+ S A A G P PS L+ + + P+
Sbjct: 322 GSIKEPGRGGVFQAWPRGLERKRAHWQASTERADGQAHGIPPRPS--LLPSSTASQDLPS 379
Query: 100 FGRGCSCHLHAVPTRAR 116
+C +H+ PT +R
Sbjct: 380 H----ACVVHSKPTISR 392
>gi|239749107 PREDICTED: hypothetical protein XP_002346912 [Homo
sapiens]
Length = 413
Score = 28.9 bits (63), Expect = 5.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 40 GGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPN 99
G + G G F+ + RG + + W+ S A A G P PS L+ + + P+
Sbjct: 322 GSIKEPGRGGVFQAWPRGLERKRAHWQASTERADGQAHGIPPRPS--LLPSSTASQDLPS 379
Query: 100 FGRGCSCHLHAVPTRAR 116
+C +H+ PT +R
Sbjct: 380 H----ACVVHSKPTISR 392
>gi|239743136 PREDICTED: hypothetical protein XP_002342759 [Homo
sapiens]
Length = 413
Score = 28.9 bits (63), Expect = 5.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 40 GGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPN 99
G + G G F+ + RG + + W+ S A A G P PS L+ + + P+
Sbjct: 322 GSIKEPGRGGVFQAWPRGLERKRAHWQASTERADGQAHGIPPRPS--LLPSSTASQDLPS 379
Query: 100 FGRGCSCHLHAVPTRAR 116
+C +H+ PT +R
Sbjct: 380 H----ACVVHSKPTISR 392
>gi|239508794 PREDICTED: hypothetical protein [Homo sapiens]
Length = 413
Score = 28.9 bits (63), Expect = 5.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 40 GGVSNWGNPGYFRDYYRGPQGQTLPWRLSHAVATAAAGGWKPVPSPILVAAECPAPGTPN 99
G + G G F+ + RG + + W+ S A A G P PS L+ + + P+
Sbjct: 322 GSIKEPGRGGVFQAWPRGLERKRAHWQASTERADGQAHGIPPRPS--LLPSSTASQDLPS 379
Query: 100 FGRGCSCHLHAVPTRAR 116
+C +H+ PT +R
Sbjct: 380 H----ACVVHSKPTISR 392
>gi|171906553 zinc finger with KRAB and SCAN domains 3 [Homo
sapiens]
Length = 538
Score = 28.9 bits (63), Expect = 5.4
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 171 TPDEDLEYPQSCVQGNAWKLQRSLLLKRKGQSETYKKNMCRELRAVGWGLLEEVGRWGEA 230
T D++++ P+ QG AWK + L+ +YK N C GL+E
Sbjct: 449 TGDKNVQEPE---QGEAWKSRMESQLENVETPMSYKCNECERSFTQNTGLIEHQKIHTGE 505
Query: 231 PPSELGAWGVG 241
P + A G G
Sbjct: 506 KPYQCNACGKG 516
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,796,648
Number of Sequences: 37866
Number of extensions: 741823
Number of successful extensions: 2370
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2344
Number of HSP's gapped (non-prelim): 53
length of query: 287
length of database: 18,247,518
effective HSP length: 101
effective length of query: 186
effective length of database: 14,423,052
effective search space: 2682687672
effective search space used: 2682687672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.