Guide to the Human Genome
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Name: LOC286177 Sequence: fasta or formatted (282aa) NCBI GI: 169173083
Description:

PREDICTED: hypothetical protein LOC286177

Not currently referenced in the text

Other entries for this name:
alt mRNA {282aa} PREDICTED: hypothetical protein LOC286177
alt prot {287aa} PREDICTED: hypothetical protein LOC286177
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         28           4
 C cysteine            1.8          5           1
 D aspartate           1.8          5           1
 E glutamate           5.7         16           2
 F phenylalanine       2.8          8           1
 G glycine            14.5         41           4
 H histidine           0.7          2           1
 I isoleucine          1.8          5           1
 K lysine              2.5          7           2
 L leucine            11.7         33           3
 M methionine          1.8          5           1
 N asparagine          1.8          5           1
 P proline             9.2         26           3
 Q glutamine           3.5         10           1
 R arginine            9.6         27           2
 S serine              7.4         21           2
 T threonine           3.2          9           1
 V valine              5.0         14           1
 W tryptophan          3.2          9           1
 Y tyrosine            2.1          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC286177 
LOC286177             1.000   PREDICTED: hypothetical protein LOC286177 
LOC286177             0.895   PREDICTED: hypothetical protein LOC286177 
ZNF828                0.032   zinc finger protein 828 
FOXD1                 0.018   forkhead box D1 
ULK1                  0.016   Unc-51-like kinase 1 
AGAP2                 0.014   centaurin, gamma 1 isoform PIKE-L 
OSBP                  0.012   oxysterol binding protein 
ZNF831                0.012   zinc finger protein 831 
LPP                   0.012   LIM domain containing preferred translocation partner...
LOC100292378          0.012   PREDICTED: hypothetical protein 
PPP1R10               0.011   protein phosphatase 1, regulatory subunit 10 
LOC100290951          0.011   PREDICTED: hypothetical protein XP_002346501 
BPTF                  0.011   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.011   bromodomain PHD finger transcription factor isoform ...
BAT2                  0.011   HLA-B associated transcript-2 
GPR135                0.009   G protein-coupled receptor 135 
INPP5E                0.009   inositol polyphosphate-5-phosphatase E 
ZFPM1                 0.009   zinc finger protein, multitype 1 
KLF16                 0.009   BTE-binding protein 4 
SH2B2                 0.009   SH2B adaptor protein 2 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
OTUD5                 0.009   OTU domain containing 5 isoform c 
OTUD5                 0.009   OTU domain containing 5 isoform a 
OTUD5                 0.009   OTU domain containing 5 isoform b 
OTUD5                 0.009   OTU domain containing 5 isoform b 
EBF2                  0.009   early B-cell factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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