Guide to the Human Genome
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Name: LOC100287196 Sequence: fasta or formatted (413aa) NCBI GI: 239743136
Description:

PREDICTED: hypothetical protein XP_002342759

Not currently referenced in the text

Other entries for this name:
alt mRNA {413aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         30           2
 C cysteine            3.1         13           2
 D aspartate           2.7         11           1
 E glutamate           6.1         25           2
 F phenylalanine       2.7         11           1
 G glycine             6.8         28           2
 H histidine           4.4         18           2
 I isoleucine          3.1         13           1
 K lysine              3.9         16           1
 L leucine             9.2         38           2
 M methionine          1.9          8           1
 N asparagine          0.5          2           1
 P proline             6.5         27           3
 Q glutamine           8.2         34           2
 R arginine            7.7         32           2
 S serine             11.9         49           3
 T threonine           5.3         22           2
 V valine              6.1         25           2
 W tryptophan          1.2          5           1
 Y tyrosine            1.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342759 
LOC100292714          1.000   PREDICTED: hypothetical protein 
LOC100290875          1.000   PREDICTED: hypothetical protein XP_002346912 
LOC100287196          1.000   PREDICTED: hypothetical protein 
ARL4D                 0.015   ADP-ribosylation factor-like 4D 
TNS1                  0.010   tensin 
MBD6                  0.010   methyl-CpG binding domain protein 6 
CIC                   0.009   capicua homolog 
CPSF7                 0.007   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF7                 0.007   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
LOC729815             0.006   PREDICTED: hypothetical protein 
SPI1                  0.006   hematopoietic transcription factor PU.1 isoform 1 [...
SPI1                  0.006   hematopoietic transcription factor PU.1 isoform 2 [...
SLC45A1               0.006   DNB5 
HELZ                  0.006   helicase with zinc finger domain 
LOC729815             0.006   PREDICTED: hypothetical protein 
SPTBN2                0.006   spectrin, beta, non-erythrocytic 2 
CPSF7                 0.006   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
MTF1                  0.006   metal-regulatory transcription factor 1 
MYST3                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
FBXO38                0.006   F-box protein 38 isoform b 
CTTN                  0.005   cortactin isoform a 
CTTN                  0.005   cortactin isoform b 
NUMA1                 0.005   nuclear mitotic apparatus protein 1 
ZNRF3                 0.005   zinc and ring finger 3 
FLJ10404              0.005   hypothetical protein LOC54540 
OTUD6A                0.005   OTU domain containing 6A 
SIRT1                 0.005   sirtuin 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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