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Name: CACNA1C Sequence: fasta or formatted (2138aa) NCBI GI: 193788540
Description:

calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 16

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2158aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2157aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2157aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2146aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2146aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2135aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2127aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2221aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2186aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2179aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2173aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2166aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2157aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2155aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2144aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7        164           3
 C cysteine            1.9         41           1
 D aspartate           4.0         86           2
 E glutamate           6.7        143           5
 F phenylalanine       5.9        126           2
 G glycine             6.1        131           4
 H histidine           1.8         39           2
 I isoleucine          6.9        147           4
 K lysine              4.7        101           2
 L leucine            10.2        218           5
 M methionine          2.5         53           2
 N asparagine          4.9        104           3
 P proline             5.1        109           2
 Q glutamine           3.8         81           2
 R arginine            5.5        117           2
 S serine              7.2        154           2
 T threonine           5.1        110           2
 V valine              6.1        130           3
 W tryptophan          1.3         27           1
 Y tyrosine            2.7         57           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, L type, alpha 1... 
CACNA1C               0.997   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.997   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.996   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.996   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.996   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.994   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.993   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.993   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.992   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.990   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.990   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.989   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.988   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.988   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.987   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.985   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.984   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.984   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.981   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.640   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.640   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.640   calcium channel, voltage-dependent, L type, alpha 1D ...
CACNA1S               0.535   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1F               0.530   calcium channel, voltage-dependent, L type, alpha 1F...
CACNA1A               0.177   calcium channel, alpha 1A subunit isoform 3 
CACNA1A               0.175   calcium channel, alpha 1A subunit isoform 4 
CACNA1B               0.175   calcium channel, voltage-dependent, N type, alpha 1B ...
CACNA1E               0.171   calcium channel, voltage-dependent, R type, alpha 1E...
SCN9A                 0.073   sodium channel, voltage-gated, type IX, alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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