Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CACNA1C Sequence: fasta or formatted (2173aa) NCBI GI: 193788730
Description:

calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 4

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2158aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2157aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2157aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2146aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2146aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2135aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2127aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2221aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2186aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2179aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2166aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2157aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2155aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2144aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8        170           3
 C cysteine            2.0         44           1
 D aspartate           4.0         88           2
 E glutamate           6.7        146           5
 F phenylalanine       5.7        123           2
 G glycine             6.1        133           4
 H histidine           1.9         42           2
 I isoleucine          6.7        145           4
 K lysine              4.7        102           2
 L leucine            10.3        223           5
 M methionine          2.5         54           2
 N asparagine          4.9        106           3
 P proline             5.1        110           2
 Q glutamine           3.8         82           2
 R arginine            5.6        122           2
 S serine              7.2        156           2
 T threonine           5.1        111           2
 V valine              6.1        132           3
 W tryptophan          1.2         27           1
 Y tyrosine            2.6         57           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, L type, alpha 1... 
CACNA1C               0.994   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.979   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.977   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.977   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.976   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.975   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.975   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.973   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.973   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.972   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.972   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.971   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.970   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.969   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.968   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.968   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.968   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.965   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.964   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.630   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.630   calcium channel, voltage-dependent, L type, alpha 1D ...
CACNA1D               0.629   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1S               0.522   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1F               0.512   calcium channel, voltage-dependent, L type, alpha 1F...
CACNA1A               0.173   calcium channel, alpha 1A subunit isoform 3 
CACNA1B               0.172   calcium channel, voltage-dependent, N type, alpha 1B ...
CACNA1A               0.171   calcium channel, alpha 1A subunit isoform 4 
CACNA1E               0.166   calcium channel, voltage-dependent, R type, alpha 1E...
CACNA1G               0.072   voltage-dependent calcium channel alpha 1G subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press