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Search of human proteins with 111118959
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|111118959 sorting nexin 21 isoform c [Homo sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|111118959 sorting nexin 21 isoform c [Homo sapiens] 310 4e-85
gi|111118961 sorting nexin 21 isoform d [Homo sapiens] 301 1e-82
gi|15553099 sorting nexin 21 isoform a [Homo sapiens] 297 3e-81
gi|23510350 sorting nexin 21 isoform b [Homo sapiens] 297 3e-81
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens] 45 2e-05
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens] 42 2e-04
gi|75677335 digestive-organ expansion factor homolog [Homo sapiens] 41 3e-04
gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens] 41 4e-04
gi|148728188 integrin, alpha E precursor [Homo sapiens] 40 6e-04
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 40 0.001
gi|55956788 nucleolin [Homo sapiens] 39 0.001
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 39 0.002
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 39 0.002
gi|25777744 hypothetical protein LOC267004 [Homo sapiens] 39 0.002
gi|115529449 upstream binding transcription factor, RNA polymera... 39 0.002
gi|115529451 upstream binding transcription factor, RNA polymera... 39 0.002
gi|7657671 upstream binding transcription factor, RNA polymerase... 39 0.002
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 39 0.002
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens] 38 0.003
gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens] 38 0.003
gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens] 38 0.003
gi|187607445 hypothetical protein LOC79137 [Homo sapiens] 38 0.003
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 37 0.005
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 37 0.005
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 37 0.006
gi|17975763 myelin transcription factor 1 [Homo sapiens] 37 0.006
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 37 0.006
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 37 0.008
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 36 0.011
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens] 36 0.011
>gi|111118959 sorting nexin 21 isoform c [Homo sapiens]
Length = 152
Score = 310 bits (793), Expect = 4e-85
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT
Sbjct: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
Query: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK
Sbjct: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
Query: 121 KSRNTLAPQRLLFEVTSANVVKDPPSNSTPSP 152
KSRNTLAPQRLLFEVTSANVVKDPPSNSTPSP
Sbjct: 121 KSRNTLAPQRLLFEVTSANVVKDPPSNSTPSP 152
>gi|111118961 sorting nexin 21 isoform d [Homo sapiens]
Length = 158
Score = 301 bits (771), Expect = 1e-82
Identities = 151/158 (95%), Positives = 152/158 (96%), Gaps = 6/158 (3%)
Query: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT
Sbjct: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
Query: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK
Sbjct: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
Query: 121 KSRNTLAPQRLLFEVTSANVVKDPPS------NSTPSP 152
KSRNTLAPQRLLFEVTSANVVKDPPS +STPSP
Sbjct: 121 KSRNTLAPQRLLFEVTSANVVKDPPSKYVTNLSSTPSP 158
>gi|15553099 sorting nexin 21 isoform a [Homo sapiens]
Length = 373
Score = 297 bits (760), Expect = 3e-81
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT
Sbjct: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
Query: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK
Sbjct: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
Query: 121 KSRNTLAPQRLLFEVTSANVVKDPPS 146
KSRNTLAPQRLLFEVTSANVVKDPPS
Sbjct: 121 KSRNTLAPQRLLFEVTSANVVKDPPS 146
>gi|23510350 sorting nexin 21 isoform b [Homo sapiens]
Length = 199
Score = 297 bits (760), Expect = 3e-81
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT
Sbjct: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
Query: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK
Sbjct: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
Query: 121 KSRNTLAPQRLLFEVTSANVVKDPPS 146
KSRNTLAPQRLLFEVTSANVVKDPPS
Sbjct: 121 KSRNTLAPQRLLFEVTSANVVKDPPS 146
>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
Length = 511
Score = 45.4 bits (106), Expect = 2e-05
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 12 SRLLHRLRHALAGDGPGE-AAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDE 70
++L HRLRH LA PG AA ++ P +L + S ++A DD
Sbjct: 147 AQLRHRLRHLLAARPPGHPGAAHSRKQRQPARLQLPAPPTPAKAEGPDADPSLSAAPDDR 206
Query: 71 DDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQ 105
DED+++ + D T GED E P +GQ
Sbjct: 207 GDEDDEESD---------DETDGEDGEGGGPGEGQ 232
>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
Length = 224
Score = 42.0 bits (97), Expect = 2e-04
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 34 PEAEQFPESSELEDDDAEGL---SSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDG 90
P +F SELE+++ E SS S + S + +DDE+DE+E++EE + +
Sbjct: 6 PNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEE-----EE 60
Query: 91 TSGEDAERSPPPDGQWGSQLLARQLQD 117
E+ E +PPP + L R D
Sbjct: 61 EEEEEEEEAPPPPRVVSEEHLRRYAPD 87
>gi|75677335 digestive-organ expansion factor homolog [Homo sapiens]
Length = 756
Score = 41.2 bits (95), Expect = 3e-04
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 32 ASPEAEQFPESSELEDDDAEGLSS--------RLSGTLSFTSAEDDEDDEDEDDEEAGPD 83
A P+ Q ESS+ D +++ S RL TL S E++ED+E+E++E++ D
Sbjct: 42 AKPQICQLSESSDSSDSESDSESEPQQVSGYHRLLATLKNVSEEEEEDEEEEEEEDSIVD 101
Query: 84 QLPLGDGTSGED 95
+ D G D
Sbjct: 102 DAEMNDEDGGSD 113
>gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]
Length = 533
Score = 40.8 bits (94), Expect = 4e-04
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 19/117 (16%)
Query: 34 PEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSG 93
P+ +FPE +E ++D G SS + S DD+D ED+ D E+ ++ +
Sbjct: 86 PQVPRFPEETESHEEDNGGWSSFEED--DYESPNDDQDGEDDGDYESPNEE---EEAPVE 140
Query: 94 EDAERSPPPDGQWGSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSNSTP 150
+DA+ PPP + +N++ P + F +++ + PPS TP
Sbjct: 141 DDADYEPPPSND-------------EEALQNSILPAK-PFPNSNSMYIDRPPSGKTP 183
>gi|148728188 integrin, alpha E precursor [Homo sapiens]
Length = 1179
Score = 40.4 bits (93), Expect = 6e-04
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 47 DDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQW 106
+DD ++R L ED E++EDE++EEAG + + DG+ D PPD Q
Sbjct: 168 EDDVN--TARQRRALEKEEEEDKEEEEDEEEEEAGTEIAIILDGSGSID-----PPDFQR 220
Query: 107 GSQLLARQLQDFWKK 121
++ +++F++K
Sbjct: 221 AKDFISNMMRNFYEK 235
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 39.7 bits (91), Expect = 0.001
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 19 RHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDE 78
+H A +G +AA S + ++ E+ E E+D+ E E+DED+ED++DE
Sbjct: 303 KHDAANNGVVKAAKSKKKKEEEENEEDEEDEEE------------EKDEEDEDEEDDEDE 350
Query: 79 EAGPDQ 84
E G D+
Sbjct: 351 EDGDDE 356
Score = 27.3 bits (59), Expect = 5.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 67 EDDEDDEDEDDEEAGPDQLPLGDGTSGEDAE 97
E+DE+DE+E+ +E D+ D G+D +
Sbjct: 327 EEDEEDEEEEKDEEDEDEEDDEDEEDGDDEQ 357
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 39.3 bits (90), Expect = 0.001
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGE 94
++E+ E E ED+D + + + A +DEDDED++D+E D + S E
Sbjct: 152 DSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDD---EEDDSEE 208
Query: 95 DAERSPPPDGQWGSQLL 111
+A + P G+ ++++
Sbjct: 209 EAMETTPAKGKKAAKVV 225
Score = 35.0 bits (79), Expect = 0.025
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 15/53 (28%)
Query: 27 PGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEE 79
P +A E E E E EDDD + EDDEDD+DEDDEE
Sbjct: 226 PVKAKNVAEDEDEEEDDEDEDDDDD---------------EDDEDDDDEDDEE 263
Score = 30.8 bits (68), Expect = 0.46
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 24/95 (25%)
Query: 30 AAASPEAE----QFPESSELEDDDAEGLSS--------------------RLSGTLSFTS 65
AAA+P +E + E E +DDD E S +
Sbjct: 178 AAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDED 237
Query: 66 AEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSP 100
E+D++DED+DD+E D D E+ E P
Sbjct: 238 EEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEP 272
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 38.9 bits (89), Expect = 0.002
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 19 RHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDE 78
+H A +G +AA S + ++ E+ E E+D+ E ++DED+ED++DE
Sbjct: 303 KHDAANNGVVKAAKSKKKKEEEENEEDEEDEEE-------------EKDEDEDEEDDEDE 349
Query: 79 EAGPDQ 84
E G D+
Sbjct: 350 EDGDDE 355
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 23 AGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGP 82
A GP E AA+ A S E E+++ E L AEDDED++D++D++
Sbjct: 1655 AAPGPREGAAAAAAAAGESSQEDEEEELE---------LPEEEAEDDEDEDDDEDDDDED 1705
Query: 83 DQLPLGDGTSGEDAERSPP 101
D D D+E S P
Sbjct: 1706 DDEDDDDEDLRTDSEESLP 1724
>gi|25777744 hypothetical protein LOC267004 [Homo sapiens]
Length = 593
Score = 38.5 bits (88), Expect = 0.002
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 23/127 (18%)
Query: 15 LHRLRHALAGDGPGEAAA----SPEAEQFPESSELEDDDAEGLSSRLSGTLSFTS----- 65
LH + L D EA+A PE P S E D+ G + L G+L T+
Sbjct: 7 LHEITDLLETDDSIEASAIVIQPPENATAPVSDEESGDEEGGTINNLPGSLLHTAAYLIQ 66
Query: 66 ----AEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKK 121
AE D DD ++ PD++P S ++ PP + +++L + WKK
Sbjct: 67 DGSDAESDSDDPSYAPKDDSPDEVP-----STFTVQQPPPSRRRKMTKILCK-----WKK 116
Query: 122 SRNTLAP 128
+ T+ P
Sbjct: 117 ADLTVQP 123
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDD--------EDDEDEDDEE 79
E E + E E+DD G SS G S +S+ED+ EDDEDEDD+E
Sbjct: 646 EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
Score = 33.9 bits (76), Expect = 0.055
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 54 SSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGT--SGEDAERSPPPDGQWGSQ 109
SSR + S EDDE+DED++DE+ + GD + G+ +E S + + G +
Sbjct: 629 SSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDE 686
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDD--------EDDEDEDDEE 79
E E + E E+DD G SS G S +S+ED+ EDDEDEDD+E
Sbjct: 646 EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
Score = 33.9 bits (76), Expect = 0.055
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 54 SSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGT--SGEDAERSPPPDGQWGSQ 109
SSR + S EDDE+DED++DE+ + GD + G+ +E S + + G +
Sbjct: 629 SSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDE 686
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDD--------EDDEDEDDEE 79
E E + E E+DD G SS G S +S+ED+ EDDEDEDD+E
Sbjct: 683 EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 735
Score = 33.9 bits (76), Expect = 0.055
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 54 SSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGT--SGEDAERSPPPDGQWGSQ 109
SSR + S EDDE+DED++DE+ + GD + G+ +E S + + G +
Sbjct: 666 SSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDE 723
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 38.5 bits (88), Expect = 0.002
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 24 GDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPD 83
G P ++ E+ + + + + D LSS + S E+ E++E+E++EE G
Sbjct: 373 GSFPESCSSDSESSSYSDHAANDSDFGSSLSSSSNSVSSEEEEEEGEEEEEEEEEEGGSG 432
Query: 84 QLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK----KSRNTLAPQRLLFEVTSAN 139
+ S E+ + S D GS ++ Q F + K + A L+ + SA
Sbjct: 433 ASDSSE-VSSEEEDSSTESDSSSGSSQVSVQSIRFRRTSFCKPPSVQAQANFLYHLASAA 491
Query: 140 VVKDP 144
P
Sbjct: 492 AATKP 496
>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 38.1 bits (87), Expect = 0.003
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 27 PGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLP 86
P + E E++ E E EDDD R G + A+ D++ EDED E G + +
Sbjct: 42 PEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFI-LDEADVDDEYEDEDQWEDGAEDIL 100
Query: 87 LGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKKSR 123
+ + + + + G AR+LQ+ W+ R
Sbjct: 101 EKEEIEASNIDNVVLDEDRSG----ARRLQNLWRDQR 133
>gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 38.1 bits (87), Expect = 0.003
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 27 PGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLP 86
P + E E++ E E EDDD R G + A+ D++ EDED E G + +
Sbjct: 42 PEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFI-LDEADVDDEYEDEDQWEDGAEDIL 100
Query: 87 LGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKKSR 123
+ + + + + G AR+LQ+ W+ R
Sbjct: 101 EKEEIEASNIDNVVLDEDRSG----ARRLQNLWRDQR 133
>gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 38.1 bits (87), Expect = 0.003
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 27 PGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLP 86
P + E E++ E E EDDD R G + A+ D++ EDED E G + +
Sbjct: 42 PEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFI-LDEADVDDEYEDEDQWEDGAEDIL 100
Query: 87 LGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKKSR 123
+ + + + + G AR+LQ+ W+ R
Sbjct: 101 EKEEIEASNIDNVVLDEDRSG----ARRLQNLWRDQR 133
>gi|187607445 hypothetical protein LOC79137 [Homo sapiens]
Length = 543
Score = 38.1 bits (87), Expect = 0.003
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 43 SELEDDDAEGLSSRLSGTLSFTSAE--DDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSP 100
SEL D++A L S T+ + D +D D+ + P++ D GE+ E +P
Sbjct: 308 SELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEETLSRDLGEGEEGELAP 367
Query: 101 PPDGQWGSQLLARQLQDFWKKSRNTLAPQRLL-------FEVTSANVVKDPPSNSTPSP 152
P D Q L+RQ D ++ + A + LL F T N PP SP
Sbjct: 368 PEDLLGRPQALSRQALDSEEEEEDVAAKETLLRLSSPLHFVNTHFNGAGSPPDGVKCSP 426
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 37.4 bits (85), Expect = 0.005
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 19 RHALAG-DGPGEAAASPEAEQFP-ESSELEDDDAEGLSSRLSG-TLSFTSAEDDEDDEDE 75
R ALAG G G A A P P ++ E E +D G SS G + S S ++ DDED+
Sbjct: 503 RRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDD 562
Query: 76 DDEEA 80
D++EA
Sbjct: 563 DEDEA 567
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 37.4 bits (85), Expect = 0.005
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 19 RHALAG-DGPGEAAASPEAEQFP-ESSELEDDDAEGLSSRLSG-TLSFTSAEDDEDDEDE 75
R ALAG G G A A P P ++ E E +D G SS G + S S ++ DDED+
Sbjct: 100 RRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDD 159
Query: 76 DDEEA 80
D++EA
Sbjct: 160 DEDEA 164
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 37.0 bits (84), Expect = 0.006
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Query: 19 RHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDE 78
+H A +G +AA S + ++ E+ E E+D+ E ED+++++DED+E
Sbjct: 303 KHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDE-----------EDEDEEDDEDEE 351
Query: 79 EAGPDQ 84
E G D+
Sbjct: 352 EDGDDE 357
Score = 26.9 bits (58), Expect = 6.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 67 EDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQW 106
E++E++EDE+DEE D+ + ++ E W
Sbjct: 322 EEEENEEDEEDEEEEKDEEDEDEEDDEDEEEDGDDEQSHW 361
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 37.0 bits (84), Expect = 0.006
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGE 94
E E+ E E ED++ E E++E++E+E++EEA PD + + TS
Sbjct: 262 EEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVI-FQEDTSHT 320
Query: 95 DAERSP 100
A+++P
Sbjct: 321 SAQKAP 326
Score = 29.3 bits (64), Expect = 1.4
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 47 DDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEE 79
+D A SS+ G LS +++E++E+E++EE
Sbjct: 241 EDAASEESSKQKGILSHEEEDEEEEEEEEEEEE 273
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 37.0 bits (84), Expect = 0.006
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGE 94
+ E++ E E E+++ E G L E++E++EDE++EE + L GT+G
Sbjct: 916 DEEEYFEEEEEEEEEFEEEFEEEEGEL-----EEEEEEEDEEEEEELEEVEDLEFGTAGG 970
Query: 95 DAERSPPP 102
+ E PP
Sbjct: 971 EVEEGAPP 978
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 36.6 bits (83), Expect = 0.008
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 23 AGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDD---EE 79
A + GEA E + PE+ E + EG+ + AE + E E + E+
Sbjct: 2198 APEAEGEAQPELEGVEAPEAEEEAQPEPEGVET--------PEAEGEAQPESEGETQGEK 2249
Query: 80 AGPDQLPLGDGTSGEDAERSPP 101
G Q+ LGDG S E +E S P
Sbjct: 2250 KGSPQVSLGDGQSEEASESSSP 2271
Score = 34.7 bits (78), Expect = 0.032
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 31 AASPEAEQFPESSELEDDDAEGLSSRLSG-TLSFTSAEDDEDDEDEDDEEAGPDQLPLGD 89
A E E PES +E +AEG + + G T E + E + EA + P +
Sbjct: 2087 AQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESE 2146
Query: 90 GTSGEDAERSPPPDGQ 105
G +DAE P+ +
Sbjct: 2147 GVEAQDAEGEAQPESE 2162
Score = 34.3 bits (77), Expect = 0.042
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 25 DGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDE--EAGP 82
+ G A E E PES +E DAEG + S + AE++ E E E EA
Sbjct: 2128 ESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEG 2187
Query: 83 DQLPLGDGTSGEDAERSPPPD 103
+ P +G +AE P+
Sbjct: 2188 EAQPESEGIEAPEAEGEAQPE 2208
Score = 32.7 bits (73), Expect = 0.12
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGE 94
E + PES +E +AE + G + E + ED D +EA + P +G
Sbjct: 2045 EGDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAP 2104
Query: 95 DAE 97
+AE
Sbjct: 2105 EAE 2107
Score = 32.7 bits (73), Expect = 0.12
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 28 GEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDE--DDEEAGPDQL 85
G A E E PES +E +AEG + S + AE + E E + +EA +
Sbjct: 2115 GIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQ 2174
Query: 86 PLGDGTSGEDAERSPPPDGQ 105
P +G +AE P+ +
Sbjct: 2175 PELEGVEAPEAEGEAQPESE 2194
Score = 31.6 bits (70), Expect = 0.27
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 28 GEAAASPEAEQFPESSELEDDDAEGLSSRLSG-------TLSFTSAEDDEDDEDEDDE-- 78
G A E E PES +E +AEG + G + AE + E ED E
Sbjct: 1834 GIEAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETP 1893
Query: 79 EAGPDQLPLGDGTSGEDAERSPPPD 103
EA + P +G +AE+ P+
Sbjct: 1894 EAEWEVQPESEGAEAPEAEKEAQPE 1918
Score = 30.4 bits (67), Expect = 0.61
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Query: 31 AASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDE--EAGPDQLPLG 88
A E E PES ++E +AEG + S + AE + E E E EA + P
Sbjct: 1860 AQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKEAQPET 1919
Query: 89 DGTSGEDAERSPPPDGQWGSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPS 146
+ + E P+ + A++ ++ +++ P+ + E A P S
Sbjct: 1920 ESVEALETEGEDEPESEGAE---AQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPES 1974
Score = 28.1 bits (61), Expect = 3.0
Identities = 19/103 (18%), Positives = 41/103 (39%)
Query: 34 PEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSG 93
P++ + +LE+ + L+ + +DE + D +++ A + L + T
Sbjct: 1239 PDSRTYESPGDLENQQQCCFPTFLNARACACATNEDEAERDSEEQRASSNLEQLAENTVQ 1298
Query: 94 EDAERSPPPDGQWGSQLLARQLQDFWKKSRNTLAPQRLLFEVT 136
E+ + +G G L +Q K+ L + + E T
Sbjct: 1299 EEVQLEETKEGTEGEGLQEEAVQLEETKTEEGLQEEGVQLEET 1341
Score = 28.1 bits (61), Expect = 3.0
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 23 AGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDD-EDDEDEDDEEAG 81
A + GE + E E PES +++ +AEG + S + AE + + E + E
Sbjct: 2064 AQEAEGEVQEA-EGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETE 2122
Query: 82 PDQLPLGDGTSGEDAERSPPPDGQ 105
+ P +G +AE P+ +
Sbjct: 2123 GEAQPESEGIEAPEAEGEAQPESE 2146
Score = 27.7 bits (60), Expect = 3.9
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 7 EGAMASRLLHRLRHALAGDGP-GEAAASPEAEQF--PESS-------ELEDDDAEGLSSR 56
EGA A + A P E S EAE+ PES E+E +AEG +
Sbjct: 1936 EGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQP 1995
Query: 57 LSGTLSFTSAEDD--EDDEDEDDEEAGPDQLPLGDGTSGEDAE 97
S + AE + E +E+ E G + P +G ++ E
Sbjct: 1996 ESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVE 2038
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 36.2 bits (82), Expect = 0.011
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 4 GTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSF 63
G+++G S R G PG P E F + + ED + + L
Sbjct: 80 GSEDGPPGSEEEDAAREGTPGS-PGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGE 138
Query: 64 TSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDA---ERSPPP 102
E++ED EDE++EE P G + G A ++ PP
Sbjct: 139 DEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPP 180
>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
Length = 1083
Score = 36.2 bits (82), Expect = 0.011
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 27 PGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLP 86
P + E E++ E E EDDD R G + A+ D++ EDED E G + +
Sbjct: 42 PEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFI-LDEADVDDEYEDEDQWEDGAEDI- 99
Query: 87 LGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKKSR 123
L ++ ++ G AR+LQ+ W+ R
Sbjct: 100 LEKASNIDNVVLDEDRSG-------ARRLQNLWRDQR 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.127 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,482,937
Number of Sequences: 37866
Number of extensions: 386226
Number of successful extensions: 6026
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 343
Number of HSP's that attempted gapping in prelim test: 2840
Number of HSP's gapped (non-prelim): 1849
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.