Guide to the Human Genome
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Name: LOC100131738 Sequence: fasta or formatted (349aa) NCBI GI: 169171485
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         50           2
 C cysteine            2.0          7           2
 D aspartate           1.4          5           1
 E glutamate           6.9         24           2
 F phenylalanine       0.6          2           1
 G glycine             8.6         30           2
 H histidine           2.6          9           1
 I isoleucine          1.1          4           1
 K lysine              2.6          9           1
 L leucine            10.0         35           2
 M methionine          1.1          4           1
 N asparagine          1.4          5           1
 P proline            10.0         35           2
 Q glutamine           5.7         20           2
 R arginine           15.8         55           4
 S serine              5.2         18           1
 T threonine           4.6         16           3
 V valine              3.7         13           1
 W tryptophan          2.3          8           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
SYN3                  0.023   synapsin III isoform IIIg 
SYN3                  0.023   synapsin III isoform IIIa 
ARHGEF17              0.023   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
LOC729417             0.020   PREDICTED: hypothetical protein 
LOC729417             0.020   PREDICTED: hypothetical protein 
LOC729417             0.020   PREDICTED: hypothetical protein 
EPS8L1                0.020   epidermal growth factor receptor pathway substrate ...
EPS8L1                0.020   epidermal growth factor receptor pathway substrate ...
FLJ22184              0.019   PREDICTED: hypothetical protein LOC80164 
LOC100287104          0.017   PREDICTED: hypothetical protein XP_002343630 
LOC100293604          0.017   PREDICTED: hypothetical protein 
LOC100289721          0.017   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.017   PREDICTED: hypothetical protein XP_002343157 
TTBK1                 0.017   tau tubulin kinase 1 
SPIRE2                0.017   spire homolog 2 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
LOC100291634          0.016   PREDICTED: hypothetical protein XP_002346062 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
LOC100287232          0.016   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.016   PREDICTED: hypothetical protein 
CCNL2                 0.015   cyclin L2 isoform A 
LOC731551             0.015   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC650354             0.015   PREDICTED: similar to ectonucleotide pyrophosphatas...
FBLN2                 0.015   fibulin 2 isoform b precursor 
FBLN2                 0.015   fibulin 2 isoform a precursor 
EFS                   0.015   embryonal Fyn-associated substrate isoform 2 
EFS                   0.015   embryonal Fyn-associated substrate isoform 1 
EHBP1L1               0.015   tangerin 
MAP7D1                0.015   MAP7 domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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