Guide to the Human Genome
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Name: LOC286002 Sequence: fasta or formatted (159aa) NCBI GI: 169170737
Description:

PREDICTED: hypothetical protein LOC286002

Not currently referenced in the text

Other entries for this name:
alt mRNA {159aa} PREDICTED: hypothetical protein LOC286002
alt mRNA {159aa} PREDICTED: hypothetical protein LOC286002
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         20           3
 C cysteine            0.6          1           1
 D aspartate           3.1          5           1
 E glutamate           5.7          9           1
 F phenylalanine       1.3          2           1
 G glycine            11.3         18           2
 H histidine           2.5          4           2
 I isoleucine          0.6          1           1
 K lysine              1.9          3           1
 L leucine            13.2         21           3
 M methionine          0.6          1           1
 N asparagine          1.9          3           1
 P proline            12.6         20           3
 Q glutamine           3.1          5           1
 R arginine           13.8         22           2
 S serine              6.9         11           2
 T threonine           3.8          6           1
 V valine              3.1          5           1
 W tryptophan          1.3          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC286002 
LOC286002             1.000   PREDICTED: hypothetical protein LOC286002 
LOC286002             1.000   PREDICTED: hypothetical protein LOC286002 
LOC100293496          0.050   PREDICTED: hypothetical protein 
LOC100287256          0.050   PREDICTED: hypothetical protein 
LOC100287256          0.050   PREDICTED: hypothetical protein XP_002342497 
LOC100131102          0.050   PREDICTED: hypothetical protein 
SH3BP1                0.050   SH3-domain binding protein 1 
B4GALNT4              0.047   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
ARHGAP17              0.043   nadrin isoform 1 
ARHGAP17              0.043   nadrin isoform 2 
PRB2                  0.043   proline-rich protein BstNI subfamily 2 
GPR124                0.040   G protein-coupled receptor 124 
PRB1                  0.040   proline-rich protein BstNI subfamily 1 isoform 1 pre...
DAAM1                 0.040   dishevelled-associated activator of morphogenesis 1 ...
SETD1A                0.040   SET domain containing 1A 
BAT2                  0.037   HLA-B associated transcript-2 
WASL                  0.037   Wiskott-Aldrich syndrome gene-like protein 
RGL3                  0.037   ral guanine nucleotide dissociation stimulator-like...
C10orf47              0.033   hypothetical protein LOC254427 
MNT                   0.033   MAX binding protein 
PAIP1                 0.033   poly(A) binding protein interacting protein 1 isofor...
C6orf132              0.033   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.033   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC100287293          0.033   PREDICTED: hypothetical protein XP_002343924 
C6orf132              0.033   PREDICTED: hypothetical protein LOC647024 
LOC100289242          0.033   PREDICTED: hypothetical protein XP_002342243 
BRD8                  0.033   bromodomain containing 8 isoform 3 
BRD8                  0.033   bromodomain containing 8 isoform 1 
WTIP                  0.033   Wilms tumor 1 interacting protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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