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Search of human proteins with 169170721
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169170721 PREDICTED: similar to intestinal mucin [Homo
sapiens]
(310 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169170721 PREDICTED: similar to intestinal mucin [Homo sapiens] 646 0.0
gi|239749213 PREDICTED: mucin 3B, cell surface associated, parti... 637 0.0
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens] 637 0.0
gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo sap... 510 e-145
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 149 2e-36
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 149 2e-36
gi|91982772 mucin 17 [Homo sapiens] 144 8e-35
gi|89026265 PREDICTED: mucin 12 [Homo sapiens] 133 2e-31
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 130 2e-30
gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens] 45 8e-05
gi|148719671 G-protein coupled receptor 116 [Homo sapiens] 42 5e-04
gi|148719673 G-protein coupled receptor 116 [Homo sapiens] 42 5e-04
gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C) ... 40 0.003
gi|61743940 G-protein coupled receptor 110 isoform 1 [Homo sapiens] 39 0.004
gi|167736355 mucin 4 isoform a [Homo sapiens] 39 0.008
gi|112382231 mucin 4 isoform e [Homo sapiens] 39 0.008
gi|112382233 mucin 4 isoform d [Homo sapiens] 39 0.008
gi|126012573 low density lipoprotein-related protein 2 [Homo sap... 35 0.085
gi|153070262 meprin A alpha [Homo sapiens] 33 0.25
gi|6631090 interphotoreceptor matrix proteoglycan 1 [Homo sapiens] 33 0.25
gi|153070264 meprin A beta [Homo sapiens] 33 0.32
gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens] 32 0.55
gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens] 32 0.55
gi|83367077 mucin 16 [Homo sapiens] 32 0.94
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 32 0.94
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 32 0.94
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 32 0.94
gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo ... 30 2.1
gi|11321571 slit homolog 3 [Homo sapiens] 30 2.1
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 30 2.7
>gi|169170721 PREDICTED: similar to intestinal mucin [Homo sapiens]
Length = 310
Score = 646 bits (1666), Expect = 0.0
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MLCADVVETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVE 60
MLCADVVETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVE
Sbjct: 1 MLCADVVETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVE 60
Query: 61 ILSLRNGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKP 120
ILSLRNGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKP
Sbjct: 61 ILSLRNGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKP 120
Query: 121 DSIKVNNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQ 180
DSIKVNNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQ
Sbjct: 121 DSIKVNNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQ 180
Query: 181 CVLETSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSG 240
CVLETSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSG
Sbjct: 181 CVLETSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSG 240
Query: 241 WWGGQRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHI 300
WWGGQRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHI
Sbjct: 241 WWGGQRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHI 300
Query: 301 KRPEMTSSSV 310
KRPEMTSSSV
Sbjct: 301 KRPEMTSSSV 310
>gi|239749213 PREDICTED: mucin 3B, cell surface associated, partial
[Homo sapiens]
Length = 1063
Score = 637 bits (1644), Expect = 0.0
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 5 DVVETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSL 64
DVVETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSL
Sbjct: 758 DVVETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSL 817
Query: 65 RNGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIK 124
RNGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIK
Sbjct: 818 RNGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIK 877
Query: 125 VNNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLE 184
VNNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLE
Sbjct: 878 VNNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLE 937
Query: 185 TSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGG 244
TSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGG
Sbjct: 938 TSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGG 997
Query: 245 QRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPE 304
QRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPE
Sbjct: 998 QRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPE 1057
Query: 305 MTSSSV 310
MTSSSV
Sbjct: 1058 MTSSSV 1063
>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
Length = 1486
Score = 637 bits (1644), Expect = 0.0
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 5 DVVETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSL 64
DVVETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSL
Sbjct: 1181 DVVETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSL 1240
Query: 65 RNGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIK 124
RNGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIK
Sbjct: 1241 RNGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIK 1300
Query: 125 VNNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLE 184
VNNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLE
Sbjct: 1301 VNNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLE 1360
Query: 185 TSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGG 244
TSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGG
Sbjct: 1361 TSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGG 1420
Query: 245 QRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPE 304
QRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPE
Sbjct: 1421 QRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPE 1480
Query: 305 MTSSSV 310
MTSSSV
Sbjct: 1481 MTSSSV 1486
>gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo
sapiens]
Length = 245
Score = 510 bits (1313), Expect = e-145
Identities = 242/245 (98%), Positives = 242/245 (98%)
Query: 66 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIKV 125
NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQD NSCQDSQTLCFKPDSIKV
Sbjct: 1 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDVNSCQDSQTLCFKPDSIKV 60
Query: 126 NNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 185
NNNSKTELTP AICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET
Sbjct: 61 NNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 120
Query: 186 SGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 245
SGP CRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ
Sbjct: 121 SGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 180
Query: 246 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM 305
RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM
Sbjct: 181 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM 240
Query: 306 TSSSV 310
TSSSV
Sbjct: 241 TSSSV 245
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 149 bits (377), Expect = 2e-36
Identities = 97/314 (30%), Positives = 164/314 (52%), Gaps = 21/314 (6%)
Query: 11 VGMEVSVD-QQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSLRNGSI 69
+GM V V + F+ +ND +SQ Y++F+ F N+M + ++GV I L NGSI
Sbjct: 1646 LGMTVKVTYRNFTEKMNDASSQEYQNFSTLFKNRMDVVLKGDNLPQYRGVNIRRLLNGSI 1705
Query: 70 VVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQ----DANSCQDSQTLCFKPDSIKV 125
VV V+LE ++ + E +E + +K + N ++ D +SC+ + LC+ + V
Sbjct: 1706 VVKNDVILEADYTLEYEELFENLAEIVKAKIMNETRTTLLDPDSCRKA-ILCYSEEDTFV 1764
Query: 126 NNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 185
+++ + C + A GY +FY+ V +L CV KCT G + ++C+ G C L+
Sbjct: 1765 DSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGTCQLQR 1824
Query: 186 SGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 245
SGP C C +T+THW+ G CE + ++LV G+ A++ +LLLAL + + +
Sbjct: 1825 SGPRCLCPNTNTHWYWGETCEFNIA-KSLVYGIV--GAVMAVLLLALIILIILFSLSQRK 1881
Query: 246 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDT---------NFHVALENVDTTM 296
R +D ++W + E G F +D +++ NF LE VD+
Sbjct: 1882 RHREQYDVPQEWRK---EGTPGIFQKTAIWEDQNLRESRFGLENAYNNFRPTLETVDSGT 1938
Query: 297 KVHIKRPEMTSSSV 310
++HI+RPEM +S+V
Sbjct: 1939 ELHIQRPEMVASTV 1952
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 149 bits (377), Expect = 2e-36
Identities = 97/314 (30%), Positives = 164/314 (52%), Gaps = 21/314 (6%)
Query: 11 VGMEVSVD-QQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSLRNGSI 69
+GM V V + F+ +ND +SQ Y++F+ F N+M + ++GV I L NGSI
Sbjct: 5172 LGMTVKVTYRNFTEKMNDASSQEYQNFSTLFKNRMDVVLKGDNLPQYRGVNIRRLLNGSI 5231
Query: 70 VVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQ----DANSCQDSQTLCFKPDSIKV 125
VV V+LE ++ + E +E + +K + N ++ D +SC+ + LC+ + V
Sbjct: 5232 VVKNDVILEADYTLEYEELFENLAEIVKAKIMNETRTTLLDPDSCRKA-ILCYSEEDTFV 5290
Query: 126 NNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 185
+++ + C + A GY +FY+ V +L CV KCT G + ++C+ G C L+
Sbjct: 5291 DSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGTCQLQR 5350
Query: 186 SGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 245
SGP C C +T+THW+ G CE + ++LV G+ A++ +LLLAL + + +
Sbjct: 5351 SGPRCLCPNTNTHWYWGETCEFNIA-KSLVYGIV--GAVMAVLLLALIILIILFSLSQRK 5407
Query: 246 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDT---------NFHVALENVDTTM 296
R +D ++W + E G F +D +++ NF LE VD+
Sbjct: 5408 RHREQYDVPQEWRK---EGTPGIFQKTAIWEDQNLRESRFGLENAYNNFRPTLETVDSGT 5464
Query: 297 KVHIKRPEMTSSSV 310
++HI+RPEM +S+V
Sbjct: 5465 ELHIQRPEMVASTV 5478
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 144 bits (364), Expect = 8e-35
Identities = 88/315 (27%), Positives = 163/315 (51%), Gaps = 14/315 (4%)
Query: 5 DVVETEVGMEVSVDQ-QFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILS 63
+ + ++ + V+V +F+ +L +++SQ +++F +TF QM +++ + + GV I
Sbjct: 4182 ETISAQMELTVTVTSVKFTEELKNHSSQEFQEFKQTFTEQMNIVYSGIPEYV--GVNITK 4239
Query: 64 LRNGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQD--SQTLCFKPD 121
LR GS+VV++ VLL ++P+ ++ + +KE + + D S +CF
Sbjct: 4240 LRLGSVVVEHDVLLRTKYTPEYKTVLDNATEVVKEKITKVTTQQIMINDICSDMMCFNTT 4299
Query: 122 SIKVNNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQC 181
+V N + T+ PE CR+ A Y +++ + C++ C G + +C+ G+C
Sbjct: 4300 GTQVQNITVTQYDPEEDCRKMAKE-YGDYFVVEYRDQKPYCISPCEPGFSVSKNCNLGKC 4358
Query: 182 VLETSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 241
+ SGP C C +T+THW+SG C + G + AG L++++L+AL + RS
Sbjct: 4359 QMSLSGPQCLCVTTETHWYSGETCNQGTQKSLVYGLVGAGVVLMLIILVALLMLVFRSKR 4418
Query: 242 WGGQRRGRSWDQDRKWFETWDEEVVGTFSNWGF----EDDGTDKD---TNFHVALENVDT 294
+++ R Q KW E GTF N GF +DD + +NF +L ++D
Sbjct: 4419 EVKRQKYR-LSQLYKWQEEDSGPAPGTFQNIGFDICQDDDSIHLESIYSNFQPSLRHIDP 4477
Query: 295 TMKVHIKRPEMTSSS 309
K+ I+RP++ ++S
Sbjct: 4478 ETKIRIQRPQVMTTS 4492
>gi|89026265 PREDICTED: mucin 12 [Homo sapiens]
Length = 978
Score = 133 bits (335), Expect = 2e-31
Identities = 90/302 (29%), Positives = 153/302 (50%), Gaps = 21/302 (6%)
Query: 11 VGMEVSVD-QQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSLRNGSI 69
+GM V V + F+ +ND +SQ Y++F+ F N+M + ++GV I L NGSI
Sbjct: 675 LGMTVKVTYRNFTEKMNDASSQEYQNFSTLFKNRMDVVLKGDNLPQYRGVNIRRLLNGSI 734
Query: 70 VVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQ----DANSCQDSQTLCFKPDSIKV 125
VV V+LE ++ + E +E + +K + N ++ D +SC+ + LC+ + V
Sbjct: 735 VVKNDVILEADYTLEYEELFENLAEIVKAKIMNETRTTLLDPDSCRKA-ILCYSEEDTFV 793
Query: 126 NNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 185
+++ + C + A GY +FY+ V +L CV KCT G + ++C+ G C L+
Sbjct: 794 DSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGTCQLQR 853
Query: 186 SGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 245
SGP C C +T+THW+ G CE + ++LV G+ A++ +LLLAL + + +
Sbjct: 854 SGPRCLCPNTNTHWYWGETCEFNIA-KSLVYGIV--GAVMAVLLLALIILIILFSLSQRK 910
Query: 246 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDT---------NFHVALENVDTTM 296
R +D ++W + E G F +D +++ NF LE VD+
Sbjct: 911 RHREQYDVPQEWRK---EGTPGIFQKTAIWEDQNLRESRFGLENAYNNFRPTLETVDSGT 967
Query: 297 KV 298
+V
Sbjct: 968 EV 969
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 130 bits (326), Expect = 2e-30
Identities = 82/274 (29%), Positives = 141/274 (51%), Gaps = 9/274 (3%)
Query: 11 VGMEVSVD-QQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSLRNGSI 69
+GM V V + F+ +ND +SQ Y++F+ F N+M + ++GV I L NGSI
Sbjct: 1609 LGMTVKVTYRNFTEKMNDASSQEYQNFSTLFKNRMDVVLKGDNLPQYRGVNIRRLLNGSI 1668
Query: 70 VVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQ----DANSCQDSQTLCFKPDSIKV 125
VV V+LE ++ + E +E + +K + N ++ D +SC+ + LC+ + V
Sbjct: 1669 VVKNDVILEADYTLEYEELFENLAEIVKAKIMNETRTTLLDPDSCRKA-ILCYSEEDTFV 1727
Query: 126 NNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 185
+++ + C + A GY +FY+ V +L CV KCT G + ++C+ G C L+
Sbjct: 1728 DSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGTCQLQR 1787
Query: 186 SGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 245
SGP C C +T+THW+ G CE + ++LV G+ A++ +LLLAL + + +
Sbjct: 1788 SGPRCLCPNTNTHWYWGETCEFNIA-KSLVYGIV--GAVMAVLLLALIILIILFSLSQRK 1844
Query: 246 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGT 279
R +D ++W + + + W D T
Sbjct: 1845 RHREQYDVPQEWRKEGTPGIFQKTAIWEAPDPDT 1878
>gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens]
Length = 1241
Score = 45.1 bits (105), Expect = 8e-05
Identities = 55/229 (24%), Positives = 90/229 (39%), Gaps = 32/229 (13%)
Query: 18 DQQFSPDLNDNTSQAYRDFNKTFWNQMQKIF-ADMQGFTFKGVEILSLRNGSIVVDYLVL 76
+ FS DL + S Y+ + F + +++ GF + +EIL+ RNGSIVV+ +
Sbjct: 909 NMMFSEDLFNKNSLEYKALEQRFLELLVPYLQSNLTGF--QNLEILNFRNGSIVVNSRMK 966
Query: 77 LEMPFSPQ--------LESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIKVNNN 128
P LE T+ + S D S ++ F+ N
Sbjct: 967 FANSVPPNVNNAVYMILEDFCTTAYNTMNLAIDKYSLDVESGDEANPCKFQA----CNEF 1022
Query: 129 SKTELTP---EAICRRAAPTGYEEFYFPLVEATRLR-CVTKCTSGVDNAIDCHQGQC-VL 183
S+ + P EA CR FP + R C + C D ++ G+C ++
Sbjct: 1023 SECLVNPWSGEAKCR----------CFPGYLSVEERPCQSLCDLQPDFCLN--DGKCDIM 1070
Query: 184 ETSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLAL 232
G CRC + W+ G CE V ++G A L+++ A+
Sbjct: 1071 PGHGAICRCRVGENWWYRGKHCEEFVSEPVIIGITIASVVGLLVIFSAI 1119
>gi|148719671 G-protein coupled receptor 116 [Homo sapiens]
Length = 1346
Score = 42.4 bits (98), Expect = 5e-04
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 8 ETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSLRNG 67
+ + M V ++ F DL + +S YR + +K + + GF KGV + ++G
Sbjct: 169 DVTLNMRVRLNVGFQEDLMNTSSALYRSYKTDLETAFRKGYGILPGF--KGVTVTGFKSG 226
Query: 68 SIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQ 111
S+VV Y V P + EQV +L Q D NS Q
Sbjct: 227 SVVVTYEVKTTPPSLELIHKANEQVVQSLN---QTYKMDYNSFQ 267
>gi|148719673 G-protein coupled receptor 116 [Homo sapiens]
Length = 1346
Score = 42.4 bits (98), Expect = 5e-04
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 8 ETEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSLRNG 67
+ + M V ++ F DL + +S YR + +K + + GF KGV + ++G
Sbjct: 169 DVTLNMRVRLNVGFQEDLMNTSSALYRSYKTDLETAFRKGYGILPGF--KGVTVTGFKSG 226
Query: 68 SIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQ 111
S+VV Y V P + EQV +L Q D NS Q
Sbjct: 227 SVVVTYEVKTTPPSLELIHKANEQVVQSLN---QTYKMDYNSFQ 267
>gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C)
precursor [Homo sapiens]
Length = 539
Score = 39.7 bits (91), Expect = 0.003
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 176 CHQG-QCVL-ETSGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLL 230
CH G QC L E G CRC + D W G RCE ++ V + G+A LVLLLL
Sbjct: 381 CHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCE-SIITDFQVMCVAVGSAALVLLLL 436
>gi|61743940 G-protein coupled receptor 110 isoform 1 [Homo sapiens]
Length = 910
Score = 39.3 bits (90), Expect = 0.004
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 9 TEVGMEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSLRNGS 68
T++ ++++F+ DL +++S Y + Q++K + +QGF + V++ RNGS
Sbjct: 150 TKIWGTFKINERFTNDLLNSSSAIYSKYANGIEIQLKKAYERIQGF--ESVQVTQFRNGS 207
Query: 69 IVVDYLVLLEMPFSPQL---ESEYEQVKTTL 96
IV Y V+ S L E E+ KT L
Sbjct: 208 IVAGYEVVGSSSASELLSAIEHVAEKAKTAL 238
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 38.5 bits (88), Expect = 0.008
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 146 GYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLETSGPACRCYSTDTHWFSGPRC 205
GY+ Y P T CV+ C+ G + H GQC SGP C C S + G C
Sbjct: 5179 GYDLVYSPQSGFT---CVSPCSRGYCD----HGGQCQHLPSGPRCSCVSFSIYTAWGEHC 5231
Query: 206 EVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 241
E G+ G AL LLLL +G V W
Sbjct: 5232 EHLSMKLDAFFGIFFG-ALGGLLLLGVGTFVVLRFW 5266
>gi|112382231 mucin 4 isoform e [Homo sapiens]
Length = 1125
Score = 38.5 bits (88), Expect = 0.008
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 146 GYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLETSGPACRCYSTDTHWFSGPRC 205
GY+ Y P T CV+ C+ G + H GQC SGP C C S + G C
Sbjct: 1020 GYDLVYSPQSGFT---CVSPCSRGYCD----HGGQCQHLPSGPRCSCVSFSIYTAWGEHC 1072
Query: 206 EVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 241
E G+ G AL LLLL +G V W
Sbjct: 1073 EHLSMKLDAFFGIFFG-ALGGLLLLGVGTFVVLRFW 1107
>gi|112382233 mucin 4 isoform d [Homo sapiens]
Length = 1176
Score = 38.5 bits (88), Expect = 0.008
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 146 GYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLETSGPACRCYSTDTHWFSGPRC 205
GY+ Y P T CV+ C+ G + H GQC SGP C C S + G C
Sbjct: 1071 GYDLVYSPQSGFT---CVSPCSRGYCD----HGGQCQHLPSGPRCSCVSFSIYTAWGEHC 1123
Query: 206 EVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 241
E G+ G AL LLLL +G V W
Sbjct: 1124 EHLSMKLDAFFGIFFG-ALGGLLLLGVGTFVVLRFW 1158
>gi|126012573 low density lipoprotein-related protein 2 [Homo sapiens]
Length = 4655
Score = 35.0 bits (79), Expect = 0.085
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 15/94 (15%)
Query: 164 TKCTSGVDNAIDC-------HQGQCVL-ETSGPACRCYSTDTHWFSGPRCEVAVHWRALV 215
T+C + ++ I+ H G C ET P C+C S ++G CE+A + +
Sbjct: 4365 TECDAAIELPINLPPPCRCMHGGNCYFDETDLPKCKCPSG----YTGKYCEMAFS-KGIS 4419
Query: 216 GGLTAGAALL-VLLLLALGVRAVRSGWWGGQRRG 248
G TA A LL +LL++ +G A+ +G++ +R G
Sbjct: 4420 PGTTAVAVLLTILLIVVIGALAI-AGFFHYRRTG 4452
>gi|153070262 meprin A alpha [Homo sapiens]
Length = 746
Score = 33.5 bits (75), Expect = 0.25
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 177 HQGQCVLETSGPACRCYSTDTHWFSGPRCE-VAVHWRAL--VGGLTAGAALLVLLLLAL 232
+ G CV +CRC S +++G RC+ V VH L V G TAG L ++A+
Sbjct: 681 NDGICVNVKGMASCRCISGHAFFYTGERCQAVQVHGSVLGMVIGGTAGVIFLTFSIIAI 739
>gi|6631090 interphotoreceptor matrix proteoglycan 1 [Homo sapiens]
Length = 797
Score = 33.5 bits (75), Expect = 0.25
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 8 ETEVGMEVS-VDQQFSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSLR 65
E V + VS V+Q+F +L D+ S Y++ QMQKIF + G FK + +L R
Sbjct: 233 EQRVELSVSLVNQKFKAELADSQSPYYQELAGKSQLQMQKIFKKLPG--FKKIHVLGFR 289
Score = 31.6 bits (70), Expect = 0.94
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 21 FSPDLNDNTSQAYRDFNKTFWNQMQKIFADMQGFTFKGVEILSLRNGSIVVDYLVLLEMP 80
FS DL + +S YR + F Q+ + FK +EIL+ RNGS++V+ +M
Sbjct: 586 FSNDLFNKSSLEYRALEQQF-TQLLVPYLRSNLTGFKQLEILNFRNGSVIVN----SKMK 640
Query: 81 FSPQLESEY-EQVKTTLKEGLQNASQDANSCQDSQTLCFKP----DSIK------VNNNS 129
F+ + + V L++ A+Q + DS +L +P D K
Sbjct: 641 FAKSVPYNLTKAVHGVLEDFRSAAAQQLHLEIDSYSLNIEPADQADPCKFLACGEFAQCV 700
Query: 130 KTELTPEAICR 140
K E T EA CR
Sbjct: 701 KNERTEEAECR 711
>gi|153070264 meprin A beta [Homo sapiens]
Length = 701
Score = 33.1 bits (74), Expect = 0.32
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 177 HQGQCVLETSGPACRCYSTDTHWFSGPRCEVAVHWR-ALVGGLTAGAALLVLLLL 230
+ G C + CRC S + W+ G RCE R +V +++ A+ L+L+
Sbjct: 615 NDGVCTVRDGKAECRCQSGEDWWYMGERCEKRGSTRDTIVIAVSSTVAVFALMLI 669
>gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens]
Length = 1318
Score = 32.3 bits (72), Expect = 0.55
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 20 QFSPDLNDNTSQAYRDFNKTFWNQMQ-KIFADM-QGFTFKGV--EILSLRNGSIVVDYLV 75
++S + +SQ YRDF + F+ ++ + A M Q GV E++S+ NGSIVV++ +
Sbjct: 802 RYSESFRNASSQEYRDFLELFFRMVRGSLPATMCQHMDAGGVRMEVVSVTNGSIVVEFHL 861
Query: 76 LL 77
L+
Sbjct: 862 LI 863
>gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]
Length = 1446
Score = 32.3 bits (72), Expect = 0.55
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 20 QFSPDLNDNTSQAYRDFNKTFWNQMQ-KIFADM-QGFTFKGV--EILSLRNGSIVVDYLV 75
++S + +SQ YRDF + F+ ++ + A M Q GV E++S+ NGSIVV++ +
Sbjct: 930 RYSESFRNASSQEYRDFLELFFRMVRGSLPATMCQHMDAGGVRMEVVSVTNGSIVVEFHL 989
Query: 76 LL 77
L+
Sbjct: 990 LI 991
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 31.6 bits (70), Expect = 0.94
Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 13 MEVSVDQQFSPDLNDNTSQAYRDFNKTFWNQMQ------KIFADMQGFTFKGVEILSLRN 66
M ++ D+ + ++A F T + ++ ++++ GF+ I +
Sbjct: 9492 MNITSDESLAASKATTETEAIHVFENTAASHVETTSATEELYSSSPGFSEPTKVISPVVT 9551
Query: 67 GSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNA--SQDANSCQDSQTLCFKPDSIK 124
S + D +V MP S + + ++L GL+ SQD S ++ T+ +K S
Sbjct: 9552 SSSIRDNMVSTTMPGSSGITRIEIESMSSLTPGLRETRTSQDITSSTETSTVLYKMPSGA 9611
Query: 125 VNNNSKTELTPEA 137
S+TE+ P +
Sbjct: 9612 TPEVSRTEVMPSS 9624
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 31.6 bits (70), Expect = 0.94
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 84 QLESEYEQVKTTLK---EGLQNASQDANSCQDSQTLCFKPDSIKVNNNSKTELTPEAICR 140
+L E++ TT+K G++ D + FKP + ++ + + A
Sbjct: 1060 ELNDSSEELYTTIKIMASGIKTKDPDVRLGLNQHYPSFKPPPFQYHHRNPMGIGVTA--- 1116
Query: 141 RAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQ 178
T + P T +RC TKC GVDN + H+
Sbjct: 1117 ----TNFTTHNIPQTFTTAIRC-TKCGKGVDNMPELHK 1149
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 31.6 bits (70), Expect = 0.94
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 84 QLESEYEQVKTTLK---EGLQNASQDANSCQDSQTLCFKPDSIKVNNNSKTELTPEAICR 140
+L E++ TT+K G++ D + FKP + ++ + + A
Sbjct: 1261 ELNDSSEELYTTIKIMASGIKTKDPDVRLGLNQHYPSFKPPPFQYHHRNPMGIGVTA--- 1317
Query: 141 RAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQ 178
T + P T +RC TKC GVDN + H+
Sbjct: 1318 ----TNFTTHNIPQTFTTAIRC-TKCGKGVDNMPELHK 1350
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 31.6 bits (70), Expect = 0.94
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 84 QLESEYEQVKTTLK---EGLQNASQDANSCQDSQTLCFKPDSIKVNNNSKTELTPEAICR 140
+L E++ TT+K G++ D + FKP + ++ + + A
Sbjct: 1261 ELNDSSEELYTTIKIMASGIKTKDPDVRLGLNQHYPSFKPPPFQYHHRNPMGIGVTA--- 1317
Query: 141 RAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQ 178
T + P T +RC TKC GVDN + H+
Sbjct: 1318 ----TNFTTHNIPQTFTTAIRC-TKCGKGVDNMPELHK 1350
>gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo
sapiens]
Length = 1998
Score = 30.4 bits (67), Expect = 2.1
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 92 VKTTLKEGLQNASQDANSCQDSQTLCFKPDSI--KVNNNSKTELTPEAICRRAAPTGYEE 149
+K T+K+ + + + N + L K D I ++N NS TE T + A P Y+
Sbjct: 1920 LKRTVKQA--SFTYNKNKIKGGANLLIKEDMIIDRINENSITEKTDLTMSTAACPPSYDR 1977
Query: 150 FYFPLVE 156
P+VE
Sbjct: 1978 VTKPIVE 1984
>gi|11321571 slit homolog 3 [Homo sapiens]
Length = 1523
Score = 30.4 bits (67), Expect = 2.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 175 DCHQG-QCVLETSGPACRCYSTDTHWFSGPRCE 206
+C G QC++ P CRC F+GPRCE
Sbjct: 1127 ECQNGAQCIVVQQEPTCRC----PPGFAGPRCE 1155
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 30.0 bits (66), Expect = 2.7
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 32/143 (22%)
Query: 160 LRCVTKCTSGVDNAIDCHQGQCVLETSG-PACRCYSTDTHWFSGPRCEVAVHWRALVGGL 218
L CV C++G G C + + P C+C T GPRCE V + G +
Sbjct: 4375 LTCVGHCSNG---------GSCTMNSKMMPECQCPPHMT----GPRCEEHVFSQQQPGHI 4421
Query: 219 TAGAALLVLLLLALGVRAVRSGWWGGQRRGRSWDQDR----------------KWFETWD 262
+ L+LLLL + V V W+ + +G Q + K +E +
Sbjct: 4422 ASILIPLLLLLLLVLVAGV-VFWYKRRVQGAKGFQHQRMTNGAMNVEIGNPTYKMYEGGE 4480
Query: 263 EEVVGTFSNWGFEDDGTDKDTNF 285
+ VG + F D DK TNF
Sbjct: 4481 PDDVGGLLDADFALD-PDKPTNF 4502
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,907,959
Number of Sequences: 37866
Number of extensions: 527063
Number of successful extensions: 1417
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 57
length of query: 310
length of database: 18,247,518
effective HSP length: 102
effective length of query: 208
effective length of database: 14,385,186
effective search space: 2992118688
effective search space used: 2992118688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.