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Search of human proteins with 169169912
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169169912 PREDICTED: hypothetical protein [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169169912 PREDICTED: hypothetical protein [Homo sapiens] 391 e-109
gi|239749005 PREDICTED: hypothetical protein [Homo sapiens] 358 2e-99
gi|239743025 PREDICTED: hypothetical protein [Homo sapiens] 358 2e-99
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 2e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 2e-06
gi|33188461 GATA binding protein 4 [Homo sapiens] 47 1e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 46 2e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 46 2e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 46 2e-05
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 44 1e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 43 1e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 43 1e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 43 2e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 43 2e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 43 2e-04
gi|239756849 PREDICTED: hypothetical protein [Homo sapiens] 42 3e-04
gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo ... 42 3e-04
gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo ... 42 3e-04
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 41 7e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 41 7e-04
gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens] 40 9e-04
gi|194272172 double homeobox, 4 [Homo sapiens] 40 9e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 40 9e-04
gi|194272217 double homeobox, 4-like [Homo sapiens] 40 9e-04
gi|194272216 double homeobox, 4-like [Homo sapiens] 40 9e-04
gi|194272215 double homeobox, 4-like [Homo sapiens] 40 9e-04
gi|194272192 double homeobox, 4-like [Homo sapiens] 40 9e-04
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
>gi|169169912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 391 bits (1005), Expect = e-109
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MVARTGWLVPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAAR 60
MVARTGWLVPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAAR
Sbjct: 1 MVARTGWLVPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAAR 60
Query: 61 GGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG 120
GGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG
Sbjct: 61 GGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG 120
Query: 121 PATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLR 180
PATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLR
Sbjct: 121 PATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLR 180
Query: 181 LEEA 184
LEEA
Sbjct: 181 LEEA 184
>gi|239749005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 358 bits (918), Expect = 2e-99
Identities = 168/169 (99%), Positives = 169/169 (100%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 75
P+APAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC
Sbjct: 10 PTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 69
Query: 76 AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS 135
AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS
Sbjct: 70 AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS 129
Query: 136 PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 184
PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA
Sbjct: 130 PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 178
>gi|239743025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 358 bits (918), Expect = 2e-99
Identities = 168/169 (99%), Positives = 169/169 (100%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 75
P+APAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC
Sbjct: 10 PTAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 69
Query: 76 AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS 135
AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS
Sbjct: 70 AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS 129
Query: 136 PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 184
PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA
Sbjct: 130 PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEEA 178
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 48.9 bits (115), Expect = 2e-06
Identities = 53/168 (31%), Positives = 62/168 (36%), Gaps = 16/168 (9%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG-AARGGTGRVPAPPRAC 73
P +PG+ GR G+ L G S D + GP G A + G P PP A
Sbjct: 516 PAGPKGSPGEAGRPGEAGLPGAK-GLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGAR 574
Query: 74 VCAG--SWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATA------- 124
AG + G G A A V GP GPA G+ PGPA
Sbjct: 575 GQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQ 634
Query: 125 --AGAPGFSRALSPGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGG 169
AG+PGF PGP PPG P A G G+R G
Sbjct: 635 GPAGSPGFQGL--PGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG 680
Score = 40.0 bits (92), Expect = 0.001
Identities = 52/167 (31%), Positives = 59/167 (35%), Gaps = 34/167 (20%)
Query: 10 PHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG-----AARGGTG 64
P A P A PG G GD A P GP G A+G G
Sbjct: 817 PGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP----------GPIGNVGAPGAKGARG 866
Query: 65 RVPAPPRACVCAGSWQGHLGRAARV-PCASHTHVGGPGPQAGPACGFRALGSAQSPGPAT 123
PP A G G A RV P + G PGP GPA G GPA
Sbjct: 867 SA-GPPGA-------TGFPGAAGRVGPPGPSGNAGPPGP-PGPAGKEGGKGPRGETGPAG 917
Query: 124 AAGAPGFSRALSPGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGG 169
G G PGP P G + +P A P A A G+ G + + G
Sbjct: 918 RPGEVG-----PPGPPGPAGEKGSPGADGP---AGAPGTPGPQGIAG 956
Score = 40.0 bits (92), Expect = 0.001
Identities = 53/178 (29%), Positives = 62/178 (34%), Gaps = 23/178 (12%)
Query: 10 PHASFPPSAPAAPGQRGRGGDISLT-------HRTVGALPSVARSWGDLQWGPCGAARGG 62
P A P AP PG +G G + R LP + G + GP GA+ G
Sbjct: 937 PGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG--KQGPSGAS--G 992
Query: 63 TGRVPAPPRACVCAGSWQGHLGRAARVPC-ASHTHVGGPGP-----QAGPACGFRALGSA 116
P P AG G GR S G PG + GPA A G+
Sbjct: 993 ERGPPGPMGPPGLAGP-PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
Query: 117 QSPGPATAAGAPGFSRALSP----GPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGG 169
+PGP AG G P GPV P G R P TG G R + G
Sbjct: 1052 GAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKG 1109
Score = 39.3 bits (90), Expect = 0.002
Identities = 47/165 (28%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 78
P PG+RG G R + + G + A+G G PA P+ +
Sbjct: 238 PGRPGERGPPGPQGA--RGLPGTAGLPGMKGHRGFSGLDGAKGDAG--PAGPKGEPGSPG 293
Query: 79 WQGHLGRAA-RVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRAL--- 134
G G+ R G PGP AG A G+A PGP AG PGF A+
Sbjct: 294 ENGAPGQMGPRGLPGERGRPGAPGP-AGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAK 352
Query: 135 -SPGPV-------PPGWRAAPRAGAPHQRAAATGSGGSRSVGGGK 171
GP P G R P P A G+ G+ G K
Sbjct: 353 GEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 397
Score = 38.9 bits (89), Expect = 0.003
Identities = 58/173 (33%), Positives = 63/173 (36%), Gaps = 29/173 (16%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAAR--GGTGRVPAPPRAC 73
P APGQ G G R P+ AR G GAA G TG PA P
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGPAGARG----NDGATGAAGPPGPTG--PAGPPGF 345
Query: 74 VCAGSWQGHLG----RAARVPCASHTHVGGPGPQ--AGPACGFRALGSAQSPGPATA--- 124
A +G G R + P G PGP AGPA A G PG A
Sbjct: 346 PGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQ---PGAKGANGA 402
Query: 125 ---AGAPGFSRALSP-GPVPPGWRAAPRA-----GAPHQRAAATGSGGSRSVG 168
AGAPGF A P GP PG P+ GAP + G VG
Sbjct: 403 PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVG 455
Score = 38.1 bits (87), Expect = 0.004
Identities = 52/166 (31%), Positives = 59/166 (35%), Gaps = 39/166 (23%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDL-QWGPCGAAR--GGTGRVPAP-- 69
PP A PG +G GD A + GD GP G A G G V AP
Sbjct: 816 PPGADGQPGAKGEPGD--------------AGAKGDAGPPGPAGPAGPPGPIGNVGAPGA 861
Query: 70 --PRACVCAGSWQGHLGRAARV-PCASHTHVGGPGP--------------QAGPACGFRA 112
R G G A RV P + G PGP + GPA
Sbjct: 862 KGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE 921
Query: 113 LGSAQSPGPATAAGAPGF-SRALSPGPVPPGWRAAPR--AGAPHQR 155
+G PGPA G+PG A +PG P A R G P QR
Sbjct: 922 VGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQR 967
Score = 36.6 bits (83), Expect = 0.013
Identities = 52/171 (30%), Positives = 67/171 (39%), Gaps = 21/171 (12%)
Query: 9 VPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPA 68
+P + PP PG++G GD+ PS AR G+ + +G G PA
Sbjct: 645 LPGPAGPPGEAGKPGEQGVPGDLGAPG------PSGAR--GERGFPGERGVQGPPG--PA 694
Query: 69 PPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGP----ACGFRA-LGSAQSPGPAT 123
PR A G G A P A + G PG Q P A G G GP
Sbjct: 695 GPRGANGAPGNDGAKGDAG-APGAPGSQ-GAPGLQGMPGERGAAGLPGPKGDRGDAGPKG 752
Query: 124 AAGAPGFS--RALSPGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGGGK 171
A G+PG R L+ GP+ PPG AP + G G+R G +
Sbjct: 753 ADGSPGKDGVRGLT-GPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDR 802
Score = 35.8 bits (81), Expect = 0.021
Identities = 48/167 (28%), Positives = 52/167 (31%), Gaps = 36/167 (21%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--AARGGTGR--VPAPP 70
PP APG +G G PS GP G ARG G P PP
Sbjct: 771 PPGPAGAPGDKGESG------------PS----------GPAGPTGARGAPGDRGEPGPP 808
Query: 71 RACVCAG--------SWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPA 122
AG +G G A A GP GP A G+ + G A
Sbjct: 809 GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSA 868
Query: 123 TAAGAPGFSRALS-PGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 168
GA GF A GP P A P G P G G G
Sbjct: 869 GPPGATGFPGAAGRVGPPGPSGNAGP-PGPPGPAGKEGGKGPRGETG 914
Score = 35.4 bits (80), Expect = 0.028
Identities = 47/161 (29%), Positives = 51/161 (31%), Gaps = 38/161 (23%)
Query: 18 APAAPGQRGRGGDISLT-HRTVGALPSVARSWGDLQWGPCGA--------ARGGTGRVPA 68
AP APG +G G + R LP GD GP GA RG TG +
Sbjct: 714 APGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDA--GPKGADGSPGKDGVRGLTGPIGP 771
Query: 69 PPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 128
P A G G + GP AGP A G PGP AG
Sbjct: 772 PGPAGA-----PGDKGES------------GPSGPAGPTGARGAPGDRGEPGPPGPAGFA 814
Query: 129 GFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 169
G PPG P A A A G G G
Sbjct: 815 G----------PPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845
Score = 31.2 bits (69), Expect = 0.53
Identities = 44/153 (28%), Positives = 54/153 (35%), Gaps = 28/153 (18%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWG----PCGAARGGTGRVPAPP 70
PP P PG G GG+ + P ++ + + G P G +P PP
Sbjct: 143 PPGPPGPPGPPGLGGNFA---------PQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPP 193
Query: 71 RACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGF 130
A G +QG G P AS G GP+ P G G AG PG
Sbjct: 194 GAPGPQG-FQGPPGEPGE-PGAS----GPMGPRGPP-------GPPGKNGDDGEAGKPGR 240
Query: 131 SRALSPGPVPPGWRAAP-RAGAPHQRAAATGSG 162
P P P G R P AG P + SG
Sbjct: 241 PGERGP-PGPQGARGLPGTAGLPGMKGHRGFSG 272
Score = 31.2 bits (69), Expect = 0.53
Identities = 49/160 (30%), Positives = 53/160 (33%), Gaps = 37/160 (23%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--AARGGTGRVPAPPRAC 73
P AP APG G G T A P+ GP G ARG G P PR
Sbjct: 1048 PGAPGAPGPVGPAGKSGDRGETGPAGPA----------GPVGPVGARGPAG--PQGPRGD 1095
Query: 74 VCAGSWQGHLG-------RAARVPCASHTHVGGPGPQ--AGPACGFRALGSAQSPGPATA 124
QG G + P G GP +GPA GSA +PG
Sbjct: 1096 KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGL 1155
Query: 125 AGAPG-------FSRALSPGPV-------PPGWRAAPRAG 150
G PG R GPV PPG P AG
Sbjct: 1156 NGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAG 1195
Score = 30.4 bits (67), Expect = 0.90
Identities = 48/165 (29%), Positives = 57/165 (34%), Gaps = 19/165 (11%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 75
P P A G G+ G+ A P+ R + GP G+ G +P P
Sbjct: 601 PGPPGAVGPAGKDGEAGAQGPPGPAGPAGERG----EQGPAGSP--GFQGLPGPAGPPGE 654
Query: 76 AGS-----WQGHLG-------RAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPAT 123
AG G LG R R G PGP AGP A G+ + G A
Sbjct: 655 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP-AGPRGANGAPGNDGAKGDAG 713
Query: 124 AAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 168
A GAPG A +P AA G R A G S G
Sbjct: 714 APGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPG 758
Score = 29.6 bits (65), Expect = 1.5
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 98 GGPGPQAGPACGFRA-----LGSAQSPGPATAAGAPGFSRALSPG----PVPPGWRAAPR 148
GGPG + P A G SPGPA G+PG A PG P G +P
Sbjct: 488 GGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG--EAGRPGEAGLPGAKGLTGSPG 545
Query: 149 AGAPHQRAAATGSGG 163
+ P + G G
Sbjct: 546 SPGPDGKTGPPGPAG 560
Score = 29.3 bits (64), Expect = 2.0
Identities = 49/180 (27%), Positives = 57/180 (31%), Gaps = 38/180 (21%)
Query: 12 ASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWG-DLQWGPCGAARGGTGRVPAPP 70
A+ P P A GQ G G P +A + G GP G G G P P
Sbjct: 381 AAGPAGNPGADGQPGAKG--------ANGAPGIAGAPGFPGARGPSGPQ--GPGGPPGP- 429
Query: 71 RACVCAGSWQGHLGRAARVPCASHTHVGG-PGPQA-----GPACGFRALGSAQSPGPATA 124
+G+ G T G PGP GPA G+ PGP
Sbjct: 430 ---------KGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGL 480
Query: 125 AGAPG-----FSRALS-----PGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHL 173
G PG SR GP P G R +P P G G + G K L
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL 540
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.9 bits (115), Expect = 2e-06
Identities = 53/173 (30%), Positives = 58/173 (33%), Gaps = 34/173 (19%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAA--RGGTGRVPAPPRA 72
PP PG +G GG LP +A GP G+ RG TG P P
Sbjct: 769 PPGPAGQPGDKGEGG--------APGLPGIA--------GPRGSPGERGETG--PPGPAG 810
Query: 73 CVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALG---------SAQSPGPAT 123
A G G GGP AGP G G SPG
Sbjct: 811 FPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPG 870
Query: 124 AAGAPGFSRALSP-----GPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGK 171
AAG PG P P PPG +P P A TG+ GS V G K
Sbjct: 871 AAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPK 923
Score = 45.4 bits (106), Expect = 3e-05
Identities = 49/156 (31%), Positives = 60/156 (38%), Gaps = 22/156 (14%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACV 74
P APG+RGR G LP A + G+ ARG G+ P PP
Sbjct: 298 PMGPRGAPGERGRPG-----------LPGAAGARGN------DGARGSDGQ-PGPPGPPG 339
Query: 75 CAGSWQGHLGRAARV-PCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRA 133
AG + G G V P S G PG + P A G+ PGP G+PG
Sbjct: 340 TAG-FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHA-GAQGPPGPPGINGSPGGKGE 397
Query: 134 LSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 169
+ P + PG A P A A G+ G R G
Sbjct: 398 MGPAGI-PGAPGLMGARGPPGPAGANGAPGLRGGAG 432
Score = 37.7 bits (86), Expect = 0.006
Identities = 50/166 (30%), Positives = 58/166 (34%), Gaps = 33/166 (19%)
Query: 15 PPSAPAAPGQRGRGGDISLT----HRTVGALPSVARSWGDLQWGPCG-----AARGGTGR 65
P P APGQ G G + G P VA G GP G +G G
Sbjct: 808 PAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGS--GPAGPPGPQGVKGERGS 865
Query: 66 VPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQA--------GPACGFRALGSAQ 117
P P A G+ R P S+ + G PGP GPA A GS
Sbjct: 866 -PGGPGAAGFPGA------RGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPG 918
Query: 118 SPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGG 163
GP AG PG + PG + P A P A TG+ G
Sbjct: 919 VSGPKGDAGQPGEKGS-------PGAQGPPGAPGPLGIAGITGARG 957
Score = 35.8 bits (81), Expect = 0.021
Identities = 27/74 (36%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 96 HVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQR 155
H G PGP GPA G GPA AGAPG P G R AP P
Sbjct: 1048 HPGPPGP-VGPA---GKSGDRGESGPAGPAGAPG----------PAGSRGAPGPQGPRGD 1093
Query: 156 AAATGSGGSRSVGG 169
TG G+ + G
Sbjct: 1094 KGETGERGAAGIKG 1107
Score = 35.4 bits (80), Expect = 0.028
Identities = 53/200 (26%), Positives = 61/200 (30%), Gaps = 44/200 (22%)
Query: 9 VPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAA-----RGGT 63
+P PP PG+ G GD GA + + GP G A RGG
Sbjct: 643 LPGTGGPPGENGKPGEPGPKGDAGAP----GAPGGKGDAGAPGERGPPGLAGAPGLRGGA 698
Query: 64 GRV-----------PAPPRACVCAGSWQGHLGRAARV----PCASHTHVGGPGPQA---- 104
G P PP A G QG G + P GGPG
Sbjct: 699 GPPGPEGGKGAAGPPGPPGAAGTPGL-QGMPGERGGLGSPGPKGDKGEPGGPGADGVPGK 757
Query: 105 ----GPACGFRALGSAQSPGPATAAGAPGFSRAL----SPG-------PVPPGWRAAPRA 149
GP G A PG GAPG SPG P P G+ AP
Sbjct: 758 DGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQ 817
Query: 150 GAPHQRAAATGSGGSRSVGG 169
G+ G + GG
Sbjct: 818 NGEPGGKGERGAPGEKGEGG 837
Score = 35.0 bits (79), Expect = 0.036
Identities = 51/172 (29%), Positives = 60/172 (34%), Gaps = 32/172 (18%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGA-----ARGGTGRVPAP 69
PP +PG +G G + P + + G GP GA RGG G P
Sbjct: 385 PPGINGSPGGKGEMGPAGIP-----GAPGLMGARGPP--GPAGANGAPGLRGGAGE-PGK 436
Query: 70 PRACVCAGSWQGHLGRAA--RVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGA 127
A G +G G A VP A G G P G+ PG A GA
Sbjct: 437 NGAKGEPGP-RGERGEAGIPGVPGAK----GEDGKDGSPG----EPGANGLPGAAGERGA 487
Query: 128 PGFSRALSPGPV-----PPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLR 174
PGF P + P G R AP P A G G V GG +R
Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERGAPGPAGPR---GAAGEPGRDGVPGGPGMR 536
Score = 33.9 bits (76), Expect = 0.081
Identities = 42/138 (30%), Positives = 47/138 (34%), Gaps = 30/138 (21%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 75
P AP APG G G + +S + GP G A G G PA R
Sbjct: 1040 PGAPGAPGHPGPPGPVG----------PAGKSGDRGESGPAGPA-GAPG--PAGSRGAPG 1086
Query: 76 AGSWQGHLGRAA-RVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRAL 134
+G G R H G PG P SPGPA GA G
Sbjct: 1087 PQGPRGDKGETGERGAAGIKGHRGFPGNPGAPG----------SPGPAGQQGAIG----- 1131
Query: 135 SPGPVPPGWRAAPRAGAP 152
SPGP P P +G P
Sbjct: 1132 SPGPAGPRGPVGP-SGPP 1148
Score = 32.7 bits (73), Expect = 0.18
Identities = 49/179 (27%), Positives = 61/179 (34%), Gaps = 40/179 (22%)
Query: 10 PHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAP 69
P + PP P PG G G + Q P + G P P
Sbjct: 173 PGPAGPPGPPGPPGTSGHPG---------------SPGSPGYQGPPGEPGQAGPSGPPGP 217
Query: 70 PRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPA--CGFRAL-------------G 114
P A +G G G + R + GP GPA GF + G
Sbjct: 218 PGAIGPSGP-AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG 276
Query: 115 SAQSPGPATAAGAPGFSRALSPGPVPPGWRAAP----RAGAPHQRAAATGSGGSRSVGG 169
+PG G PG + A PGP+ P R AP R G P A A G+ G+R G
Sbjct: 277 ETGAPGLKGENGLPGENGA--PGPMGP--RGAPGERGRPGLP-GAAGARGNDGARGSDG 330
Score = 32.7 bits (73), Expect = 0.18
Identities = 44/153 (28%), Positives = 51/153 (33%), Gaps = 28/153 (18%)
Query: 15 PPSAPAAPGQRGRGGDISLT----------HRTVGALPSVARSWGDL-QWGPCGAARGGT 63
P + APG +G GD T HR P S G Q G G+
Sbjct: 1078 PAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137
Query: 64 GRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPAT 123
R P P GH G +G PGP+ GS SPG
Sbjct: 1138 PRGPVGPSGPPGKDGTSGHPGP-----------IGPPGPRGNRG----ERGSEGSPGHPG 1182
Query: 124 AAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRA 156
G PG A PGP G AA AG ++A
Sbjct: 1183 QPGPPGPPGA--PGPCCGGVGAAAIAGIGGEKA 1213
Score = 32.3 bits (72), Expect = 0.24
Identities = 39/121 (32%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 54 GPCGAARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQ--AGPACGFR 111
GP G +G TG P P+ QG G P + G PGP+ AG
Sbjct: 624 GP-GGDKGDTG--PPGPQGL------QGLPGTGG--PPGENGKPGEPGPKGDAGAPGAPG 672
Query: 112 ALGSAQSPG---PATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 168
G A +PG P AGAPG L G PPG A P A G+ G + +
Sbjct: 673 GKGDAGAPGERGPPGLAGAPG----LRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMP 728
Query: 169 G 169
G
Sbjct: 729 G 729
Score = 31.6 bits (70), Expect = 0.40
Identities = 50/180 (27%), Positives = 57/180 (31%), Gaps = 38/180 (21%)
Query: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRV----PAPPRACV 74
P PG RG G S D + GP G+ +G +GR P+ PR
Sbjct: 530 PGGPGMRGMPG-------------SPGGPGSDGKPGPPGS-QGESGRPGPPGPSGPRGQP 575
Query: 75 CAGSWQGHLGR-AARVPCASHTHVGGPGPQA--------------GPACGFRALGSAQSP 119
+ G G A GGPGPQ GP G P
Sbjct: 576 GVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPP 635
Query: 120 GPATAAGAPGFSRALS----PG-PVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLR 174
GP G PG PG P P G AP A A A G G + G LR
Sbjct: 636 GPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR 695
Score = 29.6 bits (65), Expect = 1.5
Identities = 32/114 (28%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 55 PCGAARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALG 114
P G G P P A GH G V A + G AGPA G
Sbjct: 1028 PGGKGDRGENGSPGAPGA-------PGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAG 1080
Query: 115 SAQSPGPATAAGAPGFSRALSPGPVP-----PGWRAAPRAGAPHQRAAATGSGG 163
S +PGP G G + + PG AP + P + A GS G
Sbjct: 1081 SRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPG 1134
Score = 27.3 bits (59), Expect = 7.6
Identities = 43/161 (26%), Positives = 56/161 (34%), Gaps = 36/161 (22%)
Query: 15 PPSAPAAP----GQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPP 70
PP+AP P G +G GD P + GD P + G+ P PP
Sbjct: 91 PPTAPTRPPNGQGPQGPKGD--------PGPPGIPGRNGD----PGIPGQPGSPGSPGPP 138
Query: 71 RACV-CAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPG 129
C C Q + + S VGG A PGPA G PG
Sbjct: 139 GICESCPTGPQNYSPQYDSYDVKSGVAVGG---------------LAGYPGPAGPPGPPG 183
Query: 130 -FSRALSPG-PVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 168
+ PG P PG++ P G P Q + G ++G
Sbjct: 184 PPGTSGHPGSPGSPGYQGPP--GEPGQAGPSGPPGPPGAIG 222
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 46.6 bits (109), Expect = 1e-05
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 88 RVPCA----SHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSR------ALSPG 137
RVP + S+ GG G +G A G + G+A GP T G+PG+S+ A +P
Sbjct: 43 RVPSSVLGLSYLQGGGAGSASGGASGGSSGGAASGAGPGTQQGSPGWSQAGADGAAYTPP 102
Query: 138 PVPP--------GWRAAPRAGAPHQRAAATGSGGSRSVGG 169
PV P G AA A A + AAA SGG + G
Sbjct: 103 PVSPRFSFPGTTGSLAAAAAAAAAREAAAYSSGGGAAGAG 142
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 45.8 bits (107), Expect = 2e-05
Identities = 47/151 (31%), Positives = 53/151 (35%), Gaps = 28/151 (18%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACV 74
PP P PG+ GR G S LP V G + G GR P R
Sbjct: 910 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRT-- 967
Query: 75 CAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRAL 134
+G LG A G PG + GS +PGPA A G G + A
Sbjct: 968 ---GQKGSLGEA-----------GAPGHK----------GSKGAPGPAGARGESGLAGAP 1003
Query: 135 SPG--PVPPGWRAAPRAGAPHQRAAATGSGG 163
P P PPG P G P GSGG
Sbjct: 1004 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGG 1034
Score = 34.7 bits (78), Expect = 0.048
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 98 GGPGPQAGPACGFRA-LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRA 156
G PGPQ P G+ G PGP PG R P PPG P G P
Sbjct: 1380 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPP--GPPGTMG 1437
Query: 157 AATG 160
A++G
Sbjct: 1438 ASSG 1441
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 54 GPCGAARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRAL 113
G G + G P PP V G + + P G PGP AGP +
Sbjct: 1108 GKDGVGQPGLPGPPGPPGPVVYVSEQDGSV-LSVPGPEGRPGFAGFPGP-AGPKGNLGSK 1165
Query: 114 GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAA 146
G SPGP G PG + G + P + A
Sbjct: 1166 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGA 1198
Score = 30.8 bits (68), Expect = 0.69
Identities = 39/154 (25%), Positives = 45/154 (29%), Gaps = 47/154 (30%)
Query: 9 VPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPA 68
VP PP P PG G G RT +G G A
Sbjct: 939 VPGREGPPGFPGLPGPPGPPGREGPPGRT--------------------GQKGSLGEAGA 978
Query: 69 PPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 128
P GH G G PGP G A +PGPA G P
Sbjct: 979 P-----------GHKGSK-----------GAPGPAGARG----ESGLAGAPGPAGPPGPP 1012
Query: 129 GFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSG 162
G PG +P G+ +G P A + G
Sbjct: 1013 GPPGPPGPG-LPAGFDDMEGSGGPFWSTARSADG 1045
Score = 30.8 bits (68), Expect = 0.69
Identities = 48/162 (29%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 78
P PG G G + G++ SV GP G R G P P AG
Sbjct: 1115 PGLPGPPGPPGPVVYVSEQDGSVLSVP--------GPEG--RPGFAGFPGP------AGP 1158
Query: 79 WQGHLGRAARVPCASHTHVGGPGPQAG---PACGFRALGSAQSPGPATAAGAPGFSRALS 135
+G+LG S G PGP+ P F G A P A G PGF
Sbjct: 1159 -KGNLG--------SKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRG--P 1207
Query: 136 PGPV-PPGWRA----APRAGAPHQRA--AATGSGGSRSVGGG 170
PGP PG++ R G P G G S+G G
Sbjct: 1208 PGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 1249
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 45.8 bits (107), Expect = 2e-05
Identities = 47/151 (31%), Positives = 53/151 (35%), Gaps = 28/151 (18%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACV 74
PP P PG+ GR G S LP V G + G GR P R
Sbjct: 495 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRT-- 552
Query: 75 CAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRAL 134
+G LG A G PG + GS +PGPA A G G + A
Sbjct: 553 ---GQKGSLGEA-----------GAPGHK----------GSKGAPGPAGARGESGLAGAP 588
Query: 135 SPG--PVPPGWRAAPRAGAPHQRAAATGSGG 163
P P PPG P G P GSGG
Sbjct: 589 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGG 619
Score = 34.7 bits (78), Expect = 0.048
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 98 GGPGPQAGPACGFRA-LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRA 156
G PGPQ P G+ G PGP PG R P PPG P G P
Sbjct: 965 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPP--GPPGTMG 1022
Query: 157 AATG 160
A++G
Sbjct: 1023 ASSG 1026
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 54 GPCGAARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRAL 113
G G + G P PP V G + + P G PGP AGP +
Sbjct: 693 GKDGVGQPGLPGPPGPPGPVVYVSEQDGSV-LSVPGPEGRPGFAGFPGP-AGPKGNLGSK 750
Query: 114 GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAA 146
G SPGP G PG + G + P + A
Sbjct: 751 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGA 783
Score = 30.8 bits (68), Expect = 0.69
Identities = 39/154 (25%), Positives = 45/154 (29%), Gaps = 47/154 (30%)
Query: 9 VPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPA 68
VP PP P PG G G RT +G G A
Sbjct: 524 VPGREGPPGFPGLPGPPGPPGREGPPGRT--------------------GQKGSLGEAGA 563
Query: 69 PPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 128
P GH G G PGP G A +PGPA G P
Sbjct: 564 P-----------GHKGSK-----------GAPGPAGARG----ESGLAGAPGPAGPPGPP 597
Query: 129 GFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSG 162
G PG +P G+ +G P A + G
Sbjct: 598 GPPGPPGPG-LPAGFDDMEGSGGPFWSTARSADG 630
Score = 30.8 bits (68), Expect = 0.69
Identities = 48/162 (29%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 78
P PG G G + G++ SV GP G R G P P AG
Sbjct: 700 PGLPGPPGPPGPVVYVSEQDGSVLSVP--------GPEG--RPGFAGFPGP------AGP 743
Query: 79 WQGHLGRAARVPCASHTHVGGPGPQAG---PACGFRALGSAQSPGPATAAGAPGFSRALS 135
+G+LG S G PGP+ P F G A P A G PGF
Sbjct: 744 -KGNLG--------SKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRG--P 792
Query: 136 PGPV-PPGWRA----APRAGAPHQRA--AATGSGGSRSVGGG 170
PGP PG++ R G P G G S+G G
Sbjct: 793 PGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 834
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 45.8 bits (107), Expect = 2e-05
Identities = 47/151 (31%), Positives = 53/151 (35%), Gaps = 28/151 (18%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACV 74
PP P PG+ GR G S LP V G + G GR P R
Sbjct: 675 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRT-- 732
Query: 75 CAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRAL 134
+G LG A G PG + GS +PGPA A G G + A
Sbjct: 733 ---GQKGSLGEA-----------GAPGHK----------GSKGAPGPAGARGESGLAGAP 768
Query: 135 SPG--PVPPGWRAAPRAGAPHQRAAATGSGG 163
P P PPG P G P GSGG
Sbjct: 769 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGG 799
Score = 34.7 bits (78), Expect = 0.048
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 98 GGPGPQAGPACGFRA-LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRA 156
G PGPQ P G+ G PGP PG R P PPG P G P
Sbjct: 1145 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPP--GPPGTMG 1202
Query: 157 AATG 160
A++G
Sbjct: 1203 ASSG 1206
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 54 GPCGAARGGTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRAL 113
G G + G P PP V G + + P G PGP AGP +
Sbjct: 873 GKDGVGQPGLPGPPGPPGPVVYVSEQDGSV-LSVPGPEGRPGFAGFPGP-AGPKGNLGSK 930
Query: 114 GSAQSPGPATAAGAPGFSRALSPGPVPPGWRAA 146
G SPGP G PG + G + P + A
Sbjct: 931 GERGSPGPKGEKGEPGSIFSPDGGALGPAQKGA 963
Score = 30.8 bits (68), Expect = 0.69
Identities = 39/154 (25%), Positives = 45/154 (29%), Gaps = 47/154 (30%)
Query: 9 VPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPA 68
VP PP P PG G G RT +G G A
Sbjct: 704 VPGREGPPGFPGLPGPPGPPGREGPPGRT--------------------GQKGSLGEAGA 743
Query: 69 PPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 128
P GH G G PGP G A +PGPA G P
Sbjct: 744 P-----------GHKGSK-----------GAPGPAGARG----ESGLAGAPGPAGPPGPP 777
Query: 129 GFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSG 162
G PG +P G+ +G P A + G
Sbjct: 778 GPPGPPGPG-LPAGFDDMEGSGGPFWSTARSADG 810
Score = 30.8 bits (68), Expect = 0.69
Identities = 48/162 (29%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 78
P PG G G + G++ SV GP G R G P P AG
Sbjct: 880 PGLPGPPGPPGPVVYVSEQDGSVLSVP--------GPEG--RPGFAGFPGP------AGP 923
Query: 79 WQGHLGRAARVPCASHTHVGGPGPQAG---PACGFRALGSAQSPGPATAAGAPGFSRALS 135
+G+LG S G PGP+ P F G A P A G PGF
Sbjct: 924 -KGNLG--------SKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRG--P 972
Query: 136 PGPV-PPGWRA----APRAGAPHQRA--AATGSGGSRSVGGG 170
PGP PG++ R G P G G S+G G
Sbjct: 973 PGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFG 1014
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 43.5 bits (101), Expect = 1e-04
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 78
P G+ RG S T R+ + A W L GP G G VP P A V A
Sbjct: 309 PRLCGKSPRG---SQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASR 365
Query: 79 WQGHLGRAARVPCASHTHVGGPGPQAGPACGFRA-LGSAQSPG-PATAAGAPGFSRALSP 136
W G G +P S G P P+C RA LG+A++PG G G RA
Sbjct: 366 WGG--GGPQPLPQVSKEGSGLARPD--PSCCVRAGLGAAKTPGAQGERLGPRGTRRARGL 421
Query: 137 GPVPPGWR----AAPRAGAPHQRAAATGSGGSRSVG 168
P G + AAP P Q G+G + S+G
Sbjct: 422 QLRPVGGQSRREAAPACSGP-QPCRPHGTGAASSLG 456
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 43.5 bits (101), Expect = 1e-04
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 78
P G+ RG S T R+ + A W L GP G G VP P A V A
Sbjct: 309 PRLCGKSPRG---SQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASR 365
Query: 79 WQGHLGRAARVPCASHTHVGGPGPQAGPACGFRA-LGSAQSPG-PATAAGAPGFSRALSP 136
W G G +P S G P P+C RA LG+A++PG G G RA
Sbjct: 366 WGG--GGPQPLPQVSKEGSGLARPD--PSCCVRAGLGAAKTPGAQGERLGPRGTRRARGL 421
Query: 137 GPVPPGWR----AAPRAGAPHQRAAATGSGGSRSVG 168
P G + AAP P Q G+G + S+G
Sbjct: 422 QLRPVGGQSRREAAPACSGP-QPCRPHGTGAASSLG 456
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 43.5 bits (101), Expect = 1e-04
Identities = 51/156 (32%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 78
P G+ RG S T R+ + A W L GP G G VP P A V A
Sbjct: 309 PRLCGKSPRG---SQTARSSSPSRAWAPGWRQLGRGPATPMLHGLGPVPPPLWAAVSASR 365
Query: 79 WQGHLGRAARVPCASHTHVGGPGPQAGPACGFRA-LGSAQSPG-PATAAGAPGFSRALSP 136
W G G +P S G P P+C RA LG+A++PG G G RA
Sbjct: 366 WGG--GGPQPLPQVSKEGSGLARPD--PSCCVRAGLGAAKTPGAQGERLGPRGTRRARGL 421
Query: 137 GPVPPGWR----AAPRAGAPHQRAAATGSGGSRSVG 168
P G + AAP P Q G+G + S+G
Sbjct: 422 QLRPVGGQSRREAAPACSGP-QPCRPHGTGAASSLG 456
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 43.1 bits (100), Expect = 1e-04
Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 28/162 (17%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGA-----ARGGTGRVPAP 69
PP A PG +G G+ GA S GP G ARG G P
Sbjct: 838 PPGADGQPGAKGEQGEAG-QKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQG----P 892
Query: 70 PRACVCAGSWQGHLGRAARV-PCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 128
P A G G A RV P S+ + G PGP GP+ G+ GP AG P
Sbjct: 893 PGAT-------GFPGAAGRVGPPGSNGNPGPPGPP-GPSGKDGPKGARGDSGPPGRAGEP 944
Query: 129 GFSRALSPGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGG 169
G GP PPG + P P + A G G + + G
Sbjct: 945 GLQ-----GPAGPPGEKGEPGDDGP---SGAEGPPGPQGLAG 978
Score = 38.1 bits (87), Expect = 0.004
Identities = 54/178 (30%), Positives = 64/178 (35%), Gaps = 37/178 (20%)
Query: 10 PHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDL-QWGPCGA-----ARGGT 63
P A PP PG+RG G + GD+ + GP GA RG T
Sbjct: 740 PGAQGPPGLQGMPGERGAAG-----------IAGPKGDRGDVGEKGPEGAPGKDGGRGLT 788
Query: 64 GRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPAT 123
G P P A +G +G P S G PG + G PGPA
Sbjct: 789 G--PIGPPGPAGANGEKGEVGPPG--PAGSAGARGAPGER----------GETGPPGPAG 834
Query: 124 AAGAPGFSRALSPGPVPPGWRAAPR--AGAPHQR--AAATGSGGSRSVGGGKHLRIAQ 177
AG PG PG A + AGAP + + A G G V G K R AQ
Sbjct: 835 FAGPPGADG--QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ 890
Score = 37.0 bits (84), Expect = 0.010
Identities = 48/158 (30%), Positives = 56/158 (35%), Gaps = 19/158 (12%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 75
P P +PG G G+ +P S G G GA R P P+
Sbjct: 395 PGTPGSPGPAGASGNPG-----TDGIPGAKGSAGAP--GIAGAPGFPGPRGPPGPQG--- 444
Query: 76 AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS 135
A G G+ A GP + GPA A G A G A G PG
Sbjct: 445 ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPG-----G 499
Query: 136 PGPV-PPGWRAAP-RAGAPHQ--RAAATGSGGSRSVGG 169
GP+ PPG R AP G P Q A G+ G R G
Sbjct: 500 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 537
Score = 36.6 bits (83), Expect = 0.013
Identities = 45/138 (32%), Positives = 51/138 (36%), Gaps = 23/138 (16%)
Query: 54 GPCGAA--RGGTGRV-PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGF 110
GP GAA RG G+ PA P V G G A T GP GP
Sbjct: 336 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR--- 392
Query: 111 RALGSAQSPGPATA---------------AGAPGFSRALS-PGP-VPPGWRAAPRAGAPH 153
G+ SPGPA A AGAPG + A PGP PPG + A P
Sbjct: 393 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 452
Query: 154 QRAAATGSGGSRSVGGGK 171
+ G G + G K
Sbjct: 453 GQTGEPGIAGFKGEQGPK 470
Score = 36.2 bits (82), Expect = 0.016
Identities = 48/169 (28%), Positives = 58/169 (34%), Gaps = 25/169 (14%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTG-RVPAPPRAC 73
PP P PG G GG+ + + G A G Q G G G R P P
Sbjct: 163 PPGPPGPPGPPGLGGNFAA--QMAGGFDEKA---GGAQLGVMQGPMGPMGPRGPPGPAGA 217
Query: 74 VCAGSWQGHLGRAARVPCASHTHV-GGPGPQAGPACGFRA-----LGSAQSPGPATAAGA 127
+QG+ G + G PGP P A G PGP A G
Sbjct: 218 PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGF 277
Query: 128 PGFSRALSPG-PVPPGWRAAP-------RAGAPHQRAAATGSGGSRSVG 168
PG +PG P G R P AGAP + + G + S G
Sbjct: 278 PG-----TPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG 321
Score = 34.3 bits (77), Expect = 0.062
Identities = 54/170 (31%), Positives = 59/170 (34%), Gaps = 29/170 (17%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG-----AARGGTGR--VP 67
PP APG RG G L A P A + GP G A G GR P
Sbjct: 505 PPGERGAPGNRGFPGQDGL------AGPKGAPG----ERGPSGLAGPKGANGDPGRPGEP 554
Query: 68 APPRACVCAGSWQGHLGRAARV-PCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG 126
P A G G G +V P + G PGP GP G PGP A G
Sbjct: 555 GLPGARGLTGR-PGDAGPQGKVGPSGAPGEDGRPGP-PGPQGARGQPGVMGFPGPKGANG 612
Query: 127 APGFSRALSPG-PVPPGWRAAP------RAGAPHQRAAATGSGGSRSVGG 169
PG +A G P PG R P A P A G G + G
Sbjct: 613 EPG--KAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG 660
Score = 33.9 bits (76), Expect = 0.081
Identities = 60/190 (31%), Positives = 69/190 (36%), Gaps = 49/190 (25%)
Query: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 78
P PG+ G G LT R P A G + GP GA G GR P PP G
Sbjct: 548 PGRPGEPGLPGARGLTGR-----PGDAGPQGKV--GPSGAP-GEDGR-PGPPGPQGARGQ 598
Query: 79 -----------WQGHLGRAAR--VPCA----------SHTHVGGPGPQAGPACGFRALGS 115
G G+A +P A T GP AGPA G R G
Sbjct: 599 PGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPA-GER--GE 655
Query: 116 AQSPGPATAAGAPGFSRALSPGPV----PPGWRAAP-RAGAPHQRAAATGSGGSRSVGGG 170
+PGP+ G PG PGP PG + P AGAP G G R G
Sbjct: 656 QGAPGPSGFQGLPG-----PPGPPGEGGKPGDQGVPGEAGAP----GLVGPRGERGFPGE 706
Query: 171 KHLRIAQSLR 180
+ AQ L+
Sbjct: 707 RGSPGAQGLQ 716
Score = 33.5 bits (75), Expect = 0.11
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 98 GGPGPQA-----GPACGFRALGSAQSPGPATAAGAPGFSRALSPG-PVPPGWRAAPRAGA 151
G PGPQ GP G +PGP G PG +PG P PPG P
Sbjct: 120 GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPG-----TPGNPGPPGPPGPPGPPG 174
Query: 152 PHQRAAATGSGGSRSVGGGKHLRIAQ 177
AA +GG GG L + Q
Sbjct: 175 LGGNFAAQMAGGFDEKAGGAQLGVMQ 200
Score = 31.6 bits (70), Expect = 0.40
Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 98 GGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPV-PPGWRAAPRAGAPHQRA 156
G PG Q P A G PGP G PG + GP PG +P A P R
Sbjct: 1002 GEPGKQGAPG----ASGDRGPPGPV---GPPGLT-----GPAGEPGREGSPGADGPPGRD 1049
Query: 157 AATGSGGSRSVGG 169
A G G R G
Sbjct: 1050 GAAGVKGDRGETG 1062
Score = 27.3 bits (59), Expect = 7.6
Identities = 44/162 (27%), Positives = 54/162 (33%), Gaps = 26/162 (16%)
Query: 16 PSAPAAPGQRGRGGDISLTH-RTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACV 74
P P PG +G G L + P V G G+ P PR
Sbjct: 278 PGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK--------GESGSPGENGSPGPMGPRGL- 328
Query: 75 CAGSWQGHLGRAARVPCA-SHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRA 133
G GR A + + G PGP P +G A PG A GA G A
Sbjct: 329 -----PGERGRTGPAGAAGARGNDGQPGPAGPPG----PVGPAGGPGFPGAPGAKG--EA 377
Query: 134 LSPGPVPPGWRAAPRA--GAPHQ--RAAATGSGGSRSVGGGK 171
G P PR G P A A+G+ G+ + G K
Sbjct: 378 GPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 43.1 bits (100), Expect = 1e-04
Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 28/162 (17%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGA-----ARGGTGRVPAP 69
PP A PG +G G+ GA S GP G ARG G P
Sbjct: 769 PPGADGQPGAKGEQGEAG-QKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQG----P 823
Query: 70 PRACVCAGSWQGHLGRAARV-PCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 128
P A G G A RV P S+ + G PGP GP+ G+ GP AG P
Sbjct: 824 PGAT-------GFPGAAGRVGPPGSNGNPGPPGPP-GPSGKDGPKGARGDSGPPGRAGEP 875
Query: 129 GFSRALSPGPV-PPGWRAAPRAGAPHQRAAATGSGGSRSVGG 169
G GP PPG + P P + A G G + + G
Sbjct: 876 GLQ-----GPAGPPGEKGEPGDDGP---SGAEGPPGPQGLAG 909
Score = 38.1 bits (87), Expect = 0.004
Identities = 54/178 (30%), Positives = 64/178 (35%), Gaps = 37/178 (20%)
Query: 10 PHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDL-QWGPCGA-----ARGGT 63
P A PP PG+RG G + GD+ + GP GA RG T
Sbjct: 671 PGAQGPPGLQGMPGERGAAG-----------IAGPKGDRGDVGEKGPEGAPGKDGGRGLT 719
Query: 64 GRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPAT 123
G P P A +G +G P S G PG + G PGPA
Sbjct: 720 G--PIGPPGPAGANGEKGEVGPPG--PAGSAGARGAPGER----------GETGPPGPAG 765
Query: 124 AAGAPGFSRALSPGPVPPGWRAAPR--AGAPHQR--AAATGSGGSRSVGGGKHLRIAQ 177
AG PG PG A + AGAP + + A G G V G K R AQ
Sbjct: 766 FAGPPGADG--QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ 821
Score = 37.0 bits (84), Expect = 0.010
Identities = 48/158 (30%), Positives = 56/158 (35%), Gaps = 19/158 (12%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVC 75
P P +PG G G+ +P S G G GA R P P+
Sbjct: 326 PGTPGSPGPAGASGNPG-----TDGIPGAKGSAGAP--GIAGAPGFPGPRGPPGPQG--- 375
Query: 76 AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALS 135
A G G+ A GP + GPA A G A G A G PG
Sbjct: 376 ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPG-----G 430
Query: 136 PGPV-PPGWRAAP-RAGAPHQ--RAAATGSGGSRSVGG 169
GP+ PPG R AP G P Q A G+ G R G
Sbjct: 431 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 468
Score = 36.6 bits (83), Expect = 0.013
Identities = 45/138 (32%), Positives = 51/138 (36%), Gaps = 23/138 (16%)
Query: 54 GPCGAA--RGGTGRV-PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGF 110
GP GAA RG G+ PA P V G G A T GP GP
Sbjct: 267 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR--- 323
Query: 111 RALGSAQSPGPATA---------------AGAPGFSRALS-PGP-VPPGWRAAPRAGAPH 153
G+ SPGPA A AGAPG + A PGP PPG + A P
Sbjct: 324 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPK 383
Query: 154 QRAAATGSGGSRSVGGGK 171
+ G G + G K
Sbjct: 384 GQTGEPGIAGFKGEQGPK 401
Score = 36.2 bits (82), Expect = 0.016
Identities = 48/169 (28%), Positives = 58/169 (34%), Gaps = 25/169 (14%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTG-RVPAPPRAC 73
PP P PG G GG+ + + G A G Q G G G R P P
Sbjct: 94 PPGPPGPPGPPGLGGNFAA--QMAGGFDEKA---GGAQLGVMQGPMGPMGPRGPPGPAGA 148
Query: 74 VCAGSWQGHLGRAARVPCASHTHV-GGPGPQAGPACGFRA-----LGSAQSPGPATAAGA 127
+QG+ G + G PGP P A G PGP A G
Sbjct: 149 PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGF 208
Query: 128 PGFSRALSPG-PVPPGWRAAP-------RAGAPHQRAAATGSGGSRSVG 168
PG +PG P G R P AGAP + + G + S G
Sbjct: 209 PG-----TPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG 252
Score = 34.3 bits (77), Expect = 0.062
Identities = 54/170 (31%), Positives = 59/170 (34%), Gaps = 29/170 (17%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG-----AARGGTGR--VP 67
PP APG RG G L A P A + GP G A G GR P
Sbjct: 436 PPGERGAPGNRGFPGQDGL------AGPKGAPG----ERGPSGLAGPKGANGDPGRPGEP 485
Query: 68 APPRACVCAGSWQGHLGRAARV-PCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG 126
P A G G G +V P + G PGP GP G PGP A G
Sbjct: 486 GLPGARGLTGR-PGDAGPQGKVGPSGAPGEDGRPGP-PGPQGARGQPGVMGFPGPKGANG 543
Query: 127 APGFSRALSPG-PVPPGWRAAP------RAGAPHQRAAATGSGGSRSVGG 169
PG +A G P PG R P A P A G G + G
Sbjct: 544 EPG--KAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG 591
Score = 33.9 bits (76), Expect = 0.081
Identities = 60/190 (31%), Positives = 69/190 (36%), Gaps = 49/190 (25%)
Query: 19 PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGS 78
P PG+ G G LT R P A G + GP GA G GR P PP G
Sbjct: 479 PGRPGEPGLPGARGLTGR-----PGDAGPQGKV--GPSGAP-GEDGR-PGPPGPQGARGQ 529
Query: 79 -----------WQGHLGRAAR--VPCA----------SHTHVGGPGPQAGPACGFRALGS 115
G G+A +P A T GP AGPA G R G
Sbjct: 530 PGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPA-GER--GE 586
Query: 116 AQSPGPATAAGAPGFSRALSPGPV----PPGWRAAP-RAGAPHQRAAATGSGGSRSVGGG 170
+PGP+ G PG PGP PG + P AGAP G G R G
Sbjct: 587 QGAPGPSGFQGLPG-----PPGPPGEGGKPGDQGVPGEAGAP----GLVGPRGERGFPGE 637
Query: 171 KHLRIAQSLR 180
+ AQ L+
Sbjct: 638 RGSPGAQGLQ 647
Score = 33.5 bits (75), Expect = 0.11
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 98 GGPGPQA-----GPACGFRALGSAQSPGPATAAGAPGFSRALSPG-PVPPGWRAAPRAGA 151
G PGPQ GP G +PGP G PG +PG P PPG P
Sbjct: 51 GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPG-----TPGNPGPPGPPGPPGPPG 105
Query: 152 PHQRAAATGSGGSRSVGGGKHLRIAQ 177
AA +GG GG L + Q
Sbjct: 106 LGGNFAAQMAGGFDEKAGGAQLGVMQ 131
Score = 31.6 bits (70), Expect = 0.40
Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 98 GGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPV-PPGWRAAPRAGAPHQRA 156
G PG Q P A G PGP G PG + GP PG +P A P R
Sbjct: 933 GEPGKQGAPG----ASGDRGPPGPV---GPPGLT-----GPAGEPGREGSPGADGPPGRD 980
Query: 157 AATGSGGSRSVGG 169
A G G R G
Sbjct: 981 GAAGVKGDRGETG 993
Score = 27.3 bits (59), Expect = 7.6
Identities = 44/162 (27%), Positives = 54/162 (33%), Gaps = 26/162 (16%)
Query: 16 PSAPAAPGQRGRGGDISLTH-RTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACV 74
P P PG +G G L + P V G G+ P PR
Sbjct: 209 PGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK--------GESGSPGENGSPGPMGPRGL- 259
Query: 75 CAGSWQGHLGRAARVPCA-SHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRA 133
G GR A + + G PGP P +G A PG A GA G A
Sbjct: 260 -----PGERGRTGPAGAAGARGNDGQPGPAGPPG----PVGPAGGPGFPGAPGAKG--EA 308
Query: 134 LSPGPVPPGWRAAPRA--GAPHQ--RAAATGSGGSRSVGGGK 171
G P PR G P A A+G+ G+ + G K
Sbjct: 309 GPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 350
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 42.7 bits (99), Expect = 2e-04
Identities = 51/172 (29%), Positives = 59/172 (34%), Gaps = 41/172 (23%)
Query: 10 PHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAP 69
P S P AP + G H +GAL + Q P GG G P
Sbjct: 119 PLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGT--------QQPPVAVPGGGGGPAAVP 170
Query: 70 PRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG-------PA 122
+ + G AA GGPG +AGP F G QSPG A
Sbjct: 171 --------EFNNYYGSAAPAS-------GGPGGRAGPC--FDQHGGQQSPGMGMMHSASA 213
Query: 123 TAAGAPGFSRALSPGPVPPGWRAAPRAGAPH----QRAAATGSGGSRSVGGG 170
AAGAPG S P+ P + H R A G GG GGG
Sbjct: 214 AAAGAPG-----SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGG 260
Score = 29.3 bits (64), Expect = 2.0
Identities = 40/176 (22%), Positives = 51/176 (28%), Gaps = 28/176 (15%)
Query: 17 SAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCA 76
+A AA G GG + G L S + G + GP G + A A
Sbjct: 286 AAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGS----AA 341
Query: 77 GSWQGHLGRAARVPCASHT-------------HVGG-----------PGPQAGPACGFRA 112
G +Q G+ A+ T GG P P + P A
Sbjct: 342 GGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAA 401
Query: 113 LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 168
G+A A A G P W AA + P G RS G
Sbjct: 402 AGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQG 457
Score = 27.7 bits (60), Expect = 5.8
Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 31/147 (21%)
Query: 13 SFPPSAPAAPGQRGRGGDISLTHRT-VGALPSVARSWGDLQWGPCGAARGGTGRVPAPPR 71
S PP AP P D++L + +LP ++ S DL P G + V A
Sbjct: 595 SQPPLAPGKPNHE----DLNLIQQERPSSLPDLSGSIDDL---PTGTEATLSSAVSASGS 647
Query: 72 ACVCAGSWQGHLGRAARVPCASHT--HV----GGPGP------------QAGPACGFRAL 113
S QG A+ P + H H+ GGP P ++GP
Sbjct: 648 T-----SSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIP 702
Query: 114 GSAQSPGPATAAGAPGFSRALSPGPVP 140
GS P P + ALS P+P
Sbjct: 703 GSQMPPQPPGSQSESSSHPALSQSPMP 729
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 42.7 bits (99), Expect = 2e-04
Identities = 51/172 (29%), Positives = 59/172 (34%), Gaps = 41/172 (23%)
Query: 10 PHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAP 69
P S P AP + G H +GAL + Q P GG G P
Sbjct: 119 PLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGT--------QQPPVAVPGGGGGPAAVP 170
Query: 70 PRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG-------PA 122
+ + G AA GGPG +AGP F G QSPG A
Sbjct: 171 --------EFNNYYGSAAPAS-------GGPGGRAGPC--FDQHGGQQSPGMGMMHSASA 213
Query: 123 TAAGAPGFSRALSPGPVPPGWRAAPRAGAPH----QRAAATGSGGSRSVGGG 170
AAGAPG S P+ P + H R A G GG GGG
Sbjct: 214 AAAGAPG-----SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGG 260
Score = 29.3 bits (64), Expect = 2.0
Identities = 40/176 (22%), Positives = 51/176 (28%), Gaps = 28/176 (15%)
Query: 17 SAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCA 76
+A AA G GG + G L S + G + GP G + A A
Sbjct: 286 AAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGS----AA 341
Query: 77 GSWQGHLGRAARVPCASHT-------------HVGG-----------PGPQAGPACGFRA 112
G +Q G+ A+ T GG P P + P A
Sbjct: 342 GGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAA 401
Query: 113 LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 168
G+A A A G P W AA + P G RS G
Sbjct: 402 AGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQG 457
Score = 27.7 bits (60), Expect = 5.8
Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 31/147 (21%)
Query: 13 SFPPSAPAAPGQRGRGGDISLTHRT-VGALPSVARSWGDLQWGPCGAARGGTGRVPAPPR 71
S PP AP P D++L + +LP ++ S DL P G + V A
Sbjct: 582 SQPPLAPGKPNHE----DLNLIQQERPSSLPDLSGSIDDL---PTGTEATLSSAVSASGS 634
Query: 72 ACVCAGSWQGHLGRAARVPCASHT--HV----GGPGP------------QAGPACGFRAL 113
S QG A+ P + H H+ GGP P ++GP
Sbjct: 635 T-----SSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIP 689
Query: 114 GSAQSPGPATAAGAPGFSRALSPGPVP 140
GS P P + ALS P+P
Sbjct: 690 GSQMPPQPPGSQSESSSHPALSQSPMP 716
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 42.7 bits (99), Expect = 2e-04
Identities = 51/172 (29%), Positives = 59/172 (34%), Gaps = 41/172 (23%)
Query: 10 PHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAP 69
P S P AP + G H +GAL + Q P GG G P
Sbjct: 119 PLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGT--------QQPPVAVPGGGGGPAAVP 170
Query: 70 PRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPG-------PA 122
+ + G AA GGPG +AGP F G QSPG A
Sbjct: 171 --------EFNNYYGSAAPAS-------GGPGGRAGPC--FDQHGGQQSPGMGMMHSASA 213
Query: 123 TAAGAPGFSRALSPGPVPPGWRAAPRAGAPH----QRAAATGSGGSRSVGGG 170
AAGAPG S P+ P + H R A G GG GGG
Sbjct: 214 AAAGAPG-----SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGG 260
Score = 29.3 bits (64), Expect = 2.0
Identities = 40/176 (22%), Positives = 51/176 (28%), Gaps = 28/176 (15%)
Query: 17 SAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCA 76
+A AA G GG + G L S + G + GP G + A A
Sbjct: 286 AAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGS----AA 341
Query: 77 GSWQGHLGRAARVPCASHT-------------HVGG-----------PGPQAGPACGFRA 112
G +Q G+ A+ T GG P P + P A
Sbjct: 342 GGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAA 401
Query: 113 LGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 168
G+A A A G P W AA + P G RS G
Sbjct: 402 AGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQG 457
Score = 27.7 bits (60), Expect = 5.8
Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 31/147 (21%)
Query: 13 SFPPSAPAAPGQRGRGGDISLTHRT-VGALPSVARSWGDLQWGPCGAARGGTGRVPAPPR 71
S PP AP P D++L + +LP ++ S DL P G + V A
Sbjct: 582 SQPPLAPGKPNHE----DLNLIQQERPSSLPDLSGSIDDL---PTGTEATLSSAVSASGS 634
Query: 72 ACVCAGSWQGHLGRAARVPCASHT--HV----GGPGP------------QAGPACGFRAL 113
S QG A+ P + H H+ GGP P ++GP
Sbjct: 635 T-----SSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIP 689
Query: 114 GSAQSPGPATAAGAPGFSRALSPGPVP 140
GS P P + ALS P+P
Sbjct: 690 GSQMPPQPPGSQSESSSHPALSQSPMP 716
>gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 42.0 bits (97), Expect = 3e-04
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 28/161 (17%)
Query: 22 PGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGSW-- 79
PG RG+ V A P ++ +WG C + VP +CAG+W
Sbjct: 40 PGLRGK----------VSAGPQLS-AWGRELCEWCSPSPSSASYVPED----LCAGAWGA 84
Query: 80 -----QGHLGRAARVPCASHTHVGGPG---PQAGPAC--GFRALGSAQSPGPATAAGAPG 129
H G+ R P A G G P A P RA G S AA AP
Sbjct: 85 GGGDKHSHFGKQER-PHAREKGGRGWGWSTPTANPRLCREARACGGPGSRARTPAAPAPL 143
Query: 130 FSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGG 170
+S + P+PPG P+ G P +A +G+ VG G
Sbjct: 144 WSLPMPTSPLPPGVGGQPQLGKPTVDSAWSGTWQEAGVGEG 184
>gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo
sapiens]
Length = 329
Score = 42.0 bits (97), Expect = 3e-04
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 28/161 (17%)
Query: 22 PGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGSW-- 79
PG RG+ V A P ++ +WG C + VP +CAG+W
Sbjct: 40 PGLRGK----------VSAGPQLS-AWGRELCEWCSPSPSSASYVPED----LCAGAWGA 84
Query: 80 -----QGHLGRAARVPCASHTHVGGPG---PQAGPAC--GFRALGSAQSPGPATAAGAPG 129
H G+ R P A G G P A P RA G S AA AP
Sbjct: 85 GGGDKHSHFGKQER-PHAREKGGRGWGWSTPTANPRLCREARACGGPGSRARTPAAPAPL 143
Query: 130 FSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGG 170
+S + P+PPG P+ G P +A +G+ VG G
Sbjct: 144 WSLPMPTSPLPPGVGGQPQLGKPTVDSAWSGTWQEAGVGEG 184
>gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo
sapiens]
Length = 329
Score = 42.0 bits (97), Expect = 3e-04
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 28/161 (17%)
Query: 22 PGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACVCAGSW-- 79
PG RG+ V A P ++ +WG C + VP +CAG+W
Sbjct: 40 PGLRGK----------VSAGPQLS-AWGRELCEWCSPSPSSASYVPED----LCAGAWGA 84
Query: 80 -----QGHLGRAARVPCASHTHVGGPG---PQAGPAC--GFRALGSAQSPGPATAAGAPG 129
H G+ R P A G G P A P RA G S AA AP
Sbjct: 85 GGGDKHSHFGKQER-PHAREKGGRGWGWSTPTANPRLCREARACGGPGSRARTPAAPAPL 143
Query: 130 FSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGG 170
+S + P+PPG P+ G P +A +G+ VG G
Sbjct: 144 WSLPMPTSPLPPGVGGQPQLGKPTVDSAWSGTWQEAGVGEG 184
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 40.8 bits (94), Expect = 7e-04
Identities = 42/140 (30%), Positives = 46/140 (32%), Gaps = 12/140 (8%)
Query: 10 PHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARG---GTGRV 66
P PP P AP G G ALP A G GP G R GR
Sbjct: 31 PQQQPPPPPPPAPPP-GPGPAPPQHPPRAEALPPEAADEG----GPRGRLRSRDSSCGRP 85
Query: 67 PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG 126
P A GS G GR C+ G GP GP F G+A P P
Sbjct: 86 GTPGAASTAKGSPNGECGRG-EPQCSP---AGPEGPARGPKVSFSCRGAASGPAPGPGPA 141
Query: 127 APGFSRALSPGPVPPGWRAA 146
S P P G +A+
Sbjct: 142 EEAGSEEAGPAGEPRGSQAS 161
Score = 32.3 bits (72), Expect = 0.24
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 104 AGPACGFRALGSAQ-----SPGPATAAGAPGFSRALSPGPVPPGWRAAPRA 149
A P G ALGS + PGPA AA +PG P PPG A+PRA
Sbjct: 743 ARPLVGPLALGSPRLVRRPPPGPAPAAASPG----PPPPASPPGAPASPRA 789
Score = 27.3 bits (59), Expect = 7.6
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 102 PQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAG 150
P GPA A S P PA+ GAP RA P G AAP AG
Sbjct: 761 PPPGPA---PAAASPGPPPPASPPGAPASPRAPRTSPY-GGLPAAPLAG 805
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 40.8 bits (94), Expect = 7e-04
Identities = 57/180 (31%), Positives = 64/180 (35%), Gaps = 21/180 (11%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG-----AARGGTGRVPAP 69
PP P APG +G G + A P L GP G A G TG A
Sbjct: 254 PPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLS-GPVGPPGNPGANGLTGAKGAA 312
Query: 70 PRACVC-AGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAP 128
V A G G V A T G + GPA G+ PG A G P
Sbjct: 313 GLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPP 372
Query: 129 GFS----------RALSPGPV-PPGWRAAPRA-GAP--HQRAAATGSGGSRSVGGGKHLR 174
G S A S GP PPG R +P + G P RA G GSR G +R
Sbjct: 373 GPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVR 432
Score = 38.1 bits (87), Expect = 0.004
Identities = 54/182 (29%), Positives = 66/182 (36%), Gaps = 46/182 (25%)
Query: 16 PSAPAAP-GQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRACV 74
P+ P P G RG GG +T P A + GP G + G P PP
Sbjct: 767 PNGPPGPAGSRGDGGPPGMT-----GFPGAAG-----RTGPPGPS--GISGPPGPPGPAG 814
Query: 75 CAG-----SWQGHLGRAARVPCASHTHVGGPG--PQAGPACGFRALGSAQSPGPATAAGA 127
G QG +GR V VG PG + GP+ G +PGP GA
Sbjct: 815 KEGLRGPRGDQGPVGRTGEVGA-----VGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGA 869
Query: 128 PGF--------SRAL--------SPGPV----PPGWRAAPRA-GAPHQRAAATGSGGSRS 166
PG R L PGP+ PPG R P A G+P A +G +
Sbjct: 870 PGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGN 929
Query: 167 VG 168
G
Sbjct: 930 PG 931
Score = 36.2 bits (82), Expect = 0.016
Identities = 56/170 (32%), Positives = 63/170 (37%), Gaps = 29/170 (17%)
Query: 9 VPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQW-----GPCGAA--RG 61
+P S P P PG G G + LP VA + G L GP GAA G
Sbjct: 287 LPGLSGPVGPPGNPGANGLTGA-----KGAAGLPGVAGAPG-LPGPRGIPGPVGAAGATG 340
Query: 62 GTGRVPAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGP 121
G V P A GS +G G A GP + G GSA PGP
Sbjct: 341 ARGLVGEPGPA----GS-KGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP 395
Query: 122 ATAAGAPGFSRALSPGPVPPGWRAAPRAG--APHQRAAATGSGGSRSVGG 169
G+PG SR L PG A RAG P A+G G R G
Sbjct: 396 PGLRGSPG-SRGL-PG-------ADGRAGVMGPPGSRGASGPAGVRGPNG 436
Score = 34.7 bits (78), Expect = 0.048
Identities = 49/158 (31%), Positives = 56/158 (35%), Gaps = 22/158 (13%)
Query: 16 PSAPAAPGQRGRGGDISLTHRT-VGALPSVARSWGDLQWGPCGAARGGTGRV-PAPPRAC 73
P AP G+ G G+ +T LP G GP GA RG G V P P
Sbjct: 192 PGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAP--GPAGA-RGSDGSVGPVGPAGP 248
Query: 74 VCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRA 133
+ + G G A P VG GP AGPA GP G PG S
Sbjct: 249 IGSAGPPGFPG--APGPKGEIGAVGNAGP-AGPA------------GPRGEVGLPGLSGP 293
Query: 134 LSP--GPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 169
+ P P G A A A A G G R + G
Sbjct: 294 VGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPG 331
Score = 34.3 bits (77), Expect = 0.062
Identities = 50/163 (30%), Positives = 58/163 (35%), Gaps = 21/163 (12%)
Query: 9 VPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--AARGGTGRV 66
+P S P PG+RG G+ LP A G+ GP G A G TG
Sbjct: 557 LPGPSGPAGEVGKPGERGLHGEF--------GLPGPAGPRGER--GPPGESGAAGPTG-- 604
Query: 67 PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG 126
P R G+ G V VG GP +GP+ G+A PG G
Sbjct: 605 PIGSRGPSGPPGPDGNKGEPGVVGA-----VGTAGP-SGPSGLPGERGAAGIPGGKGEKG 658
Query: 127 APGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGG 169
PG R P G R AP A A ATG G G
Sbjct: 659 EPGL-RGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAG 700
Score = 32.7 bits (73), Expect = 0.18
Identities = 33/112 (29%), Positives = 39/112 (34%), Gaps = 20/112 (17%)
Query: 22 PGQRGRGGDISLT-HRTVGALPSVARSWGDLQWGPCGAARGGTGRV-PAPPRACVCAGSW 79
PG++G G L H + LP +A GD +G G V PA PR
Sbjct: 1011 PGEKGPRGLPGLKGHNGLQGLPGIAGHHGD---------QGAPGSVGPAGPRGPAGPSGP 1061
Query: 80 QGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFS 131
G GR + GP GPA PGP G PG S
Sbjct: 1062 AGKDGRTGHPGTVGPAGIRGPQGHQGPA---------GPPGPPGPPGPPGVS 1104
Score = 32.3 bits (72), Expect = 0.24
Identities = 51/165 (30%), Positives = 61/165 (36%), Gaps = 24/165 (14%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGAL-PSVARSWGDLQWGPCGAA--RGGTGRVPAP-- 69
PP +PG RG G G + P +R GP G G GR P
Sbjct: 395 PPGLRGSPGSRGLPG----ADGRAGVMGPPGSRGAS----GPAGVRGPNGDAGRPGEPGL 446
Query: 70 --PRACVCAGSWQGHLGRAARV-PCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAG 126
PR GS G++G A + P G PGP GPA G+ PGP G
Sbjct: 447 MGPRGL--PGS-PGNIGPAGKEGPVGLPGIDGRPGP-IGPAGARGEPGNIGFPGPKGPTG 502
Query: 127 APGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGK 171
PG + + G R AP P A G G + V GGK
Sbjct: 503 DPGKNGDKGHAGL-AGARGAP---GPDGNNGAQGPPGPQGVQGGK 543
Score = 32.3 bits (72), Expect = 0.24
Identities = 47/146 (32%), Positives = 52/146 (35%), Gaps = 31/146 (21%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRV-PAPPRACV 74
P A APG G GD A P+ GP G+ G G V PA P
Sbjct: 678 PGAVGAPGPAGATGDRGEAGAAGPAGPA----------GPRGSP-GERGEVGPAGPNGFA 726
Query: 75 CAGSWQGHLG----RAARVPCASHTHVGGPGP--QAGPA--------CGFRALGSAQS-- 118
G G R A+ P + VG GP AGPA G R G
Sbjct: 727 GPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMT 786
Query: 119 --PGPATAAGAPGFSRALSPGPVPPG 142
PG A G PG S +S P PPG
Sbjct: 787 GFPGAAGRTGPPGPS-GISGPPGPPG 811
Score = 31.6 bits (70), Expect = 0.40
Identities = 53/170 (31%), Positives = 61/170 (35%), Gaps = 35/170 (20%)
Query: 10 PHASFPPSAPAAP-GQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAAR--GGTGRV 66
P S PS P P G +G G VGA+ + S G GAA GG G
Sbjct: 605 PIGSRGPSGPPGPDGNKGEPG-------VVGAVGTAGPSGPSGLPGERGAAGIPGGKGEK 657
Query: 67 PAPPRACVCAGSWQGHLGRAARVPC-ASHTHVGGPGPQAGPACGFR----ALGSAQSPGP 121
P +G +G R + VG PGP A G R A G A GP
Sbjct: 658 GEP--------GLRGEIGNPGRDGARGAPGAVGAPGPAG--ATGDRGEAGAAGPAGPAGP 707
Query: 122 ATAAGAPGFSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGK 171
+ G G GP P A P AGA A G+ G R G K
Sbjct: 708 RGSPGERG-----EVGPAGPNGFAGP-AGA----AGQPGAKGERGAKGPK 747
Score = 31.2 bits (69), Expect = 0.53
Identities = 38/117 (32%), Positives = 41/117 (35%), Gaps = 31/117 (26%)
Query: 15 PPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--AARGGTGRVPAPPRA 72
PP P PG G GG+ + + G L GP G RG G AP
Sbjct: 61 PPGPPGPPGPPGLGGNFAAQYDGKGV---------GLGPGPMGLMGPRGPPGAAGAP--- 108
Query: 73 CVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPG 129
QG G A G PG Q GPA A G A PG A G PG
Sbjct: 109 -----GPQGFQGPAG--------EPGEPG-QTGPA---GARGPAGPPGKAGEDGHPG 148
Score = 31.2 bits (69), Expect = 0.53
Identities = 50/178 (28%), Positives = 62/178 (34%), Gaps = 36/178 (20%)
Query: 14 FP-PSAPAA-PGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCG--AARGGTGRV--P 67
FP P P PG+ G G L GA + + GP G +GG G P
Sbjct: 494 FPGPKGPTGDPGKNGDKGHAGLA----GARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPP 549
Query: 68 APPRACVCAGSW--QGHLGRAARVPCASHTHVGGPGPQ--------------AGPACGFR 111
PP G G +G+ H G PGP AGP
Sbjct: 550 GPPGFQGLPGPSGPAGEVGKPGER--GLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIG 607
Query: 112 ALGSAQSPGPATAAGAPGFSRAL-SPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVG 168
+ G + PGP G PG A+ + GP P +G P +R AA GG G
Sbjct: 608 SRGPSGPPGPDGNKGEPGVVGAVGTAGPSGP-------SGLPGERGAAGIPGGKGEKG 658
Score = 27.3 bits (59), Expect = 7.6
Identities = 38/122 (31%), Positives = 42/122 (34%), Gaps = 9/122 (7%)
Query: 54 GPCGAARGGTGRVPAPPRACVCAGS--WQGHLGRAARVPCASHTHVGGPGPQAGPACGFR 111
GP G A G+ P PP GS G GRA + GP GP
Sbjct: 382 GPNGEA--GSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAG 439
Query: 112 ALGSAQSPGPATAAGAPG-FSRALSPGPVP-PGWRAAPRAGAPHQRAAATGSGGSRSVGG 169
G GP G+PG A GPV PG P P A A G G+ G
Sbjct: 440 RPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRP---GPIGPAGARGEPGNIGFPG 496
Query: 170 GK 171
K
Sbjct: 497 PK 498
Score = 26.9 bits (58), Expect = 9.9
Identities = 43/159 (27%), Positives = 53/159 (33%), Gaps = 18/159 (11%)
Query: 10 PHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAP 69
P A PP A +PG G G+ G + D Q G G RG G +
Sbjct: 903 PGARGPPGAVGSPGVNGAPGEAGRD----GNPGNDGPPGRDGQPGHKG-ERGYPGNI--G 955
Query: 70 PRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPG 129
P A G +G P H + G GP +GP A+G GP G G
Sbjct: 956 PVGAAGAPGPHGPVG-----PAGKHGNRGETGP-SGPVGPAGAVGPRGPSGPQGIRGDKG 1009
Query: 130 FSRALSPGPVP-----PGWRAAPRAGAPHQRAAATGSGG 163
P +P G + P H A GS G
Sbjct: 1010 EPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVG 1048
>gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 40.4 bits (93), Expect = 9e-04
Identities = 53/162 (32%), Positives = 62/162 (38%), Gaps = 34/162 (20%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGAL-PS-VARSWGDLQWGPCGAARGGTG-RVPAPPRA 72
P P APG +G +S R AL PS A + G Q P ARG PAPP
Sbjct: 254 PHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPAP---ARGDFAYAAPAPPDG 310
Query: 73 CVC---AGSWQGHLGRAARV----------PCASHTHVGGPGP-QAGP----------AC 108
+ A W H G++ PCA V PGP QAGP +
Sbjct: 311 ALSHPQAPRWPPHPGKSREDRDPQRDGLPGPCA----VAQPGPAQAGPQGQGVLAPPTSQ 366
Query: 109 GFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAG 150
G G + P A AA P A P P PP A+ R G
Sbjct: 367 GSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQG 408
>gi|194272172 double homeobox, 4 [Homo sapiens]
Length = 485
Score = 40.4 bits (93), Expect = 9e-04
Identities = 53/162 (32%), Positives = 62/162 (38%), Gaps = 34/162 (20%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGAL-PS-VARSWGDLQWGPCGAARGGTG-RVPAPPRA 72
P P APG +G +S R AL PS A + G Q P ARG PAPP
Sbjct: 254 PHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPAP---ARGDFAYAAPAPPDG 310
Query: 73 CVC---AGSWQGHLGRAARV----------PCASHTHVGGPGP-QAGP----------AC 108
+ A W H G++ PCA V PGP QAGP +
Sbjct: 311 ALSHPQAPRWPPHPGKSREDRDPQRDGLPGPCA----VAQPGPAQAGPQGQGVLAPPTSQ 366
Query: 109 GFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAG 150
G G + P A AA P A P P PP A+ R G
Sbjct: 367 GSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQG 408
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 40.4 bits (93), Expect = 9e-04
Identities = 39/140 (27%), Positives = 52/140 (37%), Gaps = 15/140 (10%)
Query: 15 PPSA--PAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGTGRVPAPPRA 72
PP+A PA+P + + G T +T + P+ ++ G P G R G + P P
Sbjct: 543 PPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGA---PPGGQQRQGPPQKPPGPAG 599
Query: 73 CVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSR 132
S G + R P GPGP P S P PATAA
Sbjct: 600 PTRQASQAGPVPRTGP-PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAG----- 653
Query: 133 ALSPGPVPPGWRAAPRAGAP 152
GP P +A+P P
Sbjct: 654 ----GPPHPQLKASPAQAQP 669
Score = 35.4 bits (80), Expect = 0.028
Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 23/166 (13%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGALPSV---ARSWGDLQWGPCGAARGGTGRVPAPPRA 72
P++ AAP +G+G GA P+ A Q GP A R + PAPP+A
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKA 577
Query: 73 CVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSR 132
+ P G P GPA R A GP G P +
Sbjct: 578 --------------SGAPPGGQQRQGPPQKPPGPAGPTR---QASQAGPVPRTGPPTTQQ 620
Query: 133 ALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQS 178
GP P G A P Q + + GG H ++ S
Sbjct: 621 PRPSGPGPAGRPKPQLAQKPSQDVPPPATA---AAGGPPHPQLKAS 663
Score = 35.0 bits (79), Expect = 0.036
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 87 ARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRA- 145
A +P T + P P P G + G+ PG ATA + G + A SP PG
Sbjct: 15 ANLPNGYMTDLQRPQPPPPPP-GAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGG 73
Query: 146 ----APRAGAPHQRAAATGSGGSRSVGGG 170
+ + A Q AA + S VGGG
Sbjct: 74 GGFFSSLSNAVKQTTAAAAATFSEQVGGG 102
Score = 30.0 bits (66), Expect = 1.2
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 88 RVPCASHTHVGGPGPQAGPACGFRALGSAQSP-GPATAAGAP-----GFSRALSPGPVPP 141
R P H+ G GP AG R +P PA+ A P SR ++ GP P
Sbjct: 484 RPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAP 543
Query: 142 GWRAAPRAGAPHQRAAATGSGGSRSVGG 169
P + +P ++A + SV G
Sbjct: 544 PAARPPASPSPQRQAGPPQATRQTSVSG 571
>gi|194272217 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 40.4 bits (93), Expect = 9e-04
Identities = 53/162 (32%), Positives = 62/162 (38%), Gaps = 34/162 (20%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGAL-PS-VARSWGDLQWGPCGAARGGTG-RVPAPPRA 72
P P APG +G +S R AL PS A + G Q P ARG PAPP
Sbjct: 254 PHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPAP---ARGDFAYAAPAPPDG 310
Query: 73 CVC---AGSWQGHLGRAARV----------PCASHTHVGGPGP-QAGP----------AC 108
+ A W H G++ PCA V PGP QAGP +
Sbjct: 311 ALSHPQAPRWPPHPGKSREDRDPQRDGLPGPCA----VAQPGPAQAGPQGQGVLAPPTSQ 366
Query: 109 GFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAG 150
G G + P A AA P A P P PP A+ R G
Sbjct: 367 GSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQG 408
>gi|194272216 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 40.4 bits (93), Expect = 9e-04
Identities = 53/162 (32%), Positives = 62/162 (38%), Gaps = 34/162 (20%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGAL-PS-VARSWGDLQWGPCGAARGGTG-RVPAPPRA 72
P P APG +G +S R AL PS A + G Q P ARG PAPP
Sbjct: 254 PHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPAP---ARGDFAYAAPAPPDG 310
Query: 73 CVC---AGSWQGHLGRAARV----------PCASHTHVGGPGP-QAGP----------AC 108
+ A W H G++ PCA V PGP QAGP +
Sbjct: 311 ALSHPQAPRWPPHPGKSREDRDPQRDGLPGPCA----VAQPGPAQAGPQGQGVLAPPTSQ 366
Query: 109 GFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAG 150
G G + P A AA P A P P PP A+ R G
Sbjct: 367 GSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQG 408
>gi|194272215 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 40.4 bits (93), Expect = 9e-04
Identities = 53/162 (32%), Positives = 62/162 (38%), Gaps = 34/162 (20%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGAL-PS-VARSWGDLQWGPCGAARGGTG-RVPAPPRA 72
P P APG +G +S R AL PS A + G Q P ARG PAPP
Sbjct: 254 PHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPAP---ARGDFAYAAPAPPDG 310
Query: 73 CVC---AGSWQGHLGRAARV----------PCASHTHVGGPGP-QAGP----------AC 108
+ A W H G++ PCA V PGP QAGP +
Sbjct: 311 ALSHPQAPRWPPHPGKSREDRDPQRDGLPGPCA----VAQPGPAQAGPQGQGVLAPPTSQ 366
Query: 109 GFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAG 150
G G + P A AA P A P P PP A+ R G
Sbjct: 367 GSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQG 408
>gi|194272192 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 40.4 bits (93), Expect = 9e-04
Identities = 53/162 (32%), Positives = 62/162 (38%), Gaps = 34/162 (20%)
Query: 16 PSAPAAPGQRGRGGDISLTHRTVGAL-PS-VARSWGDLQWGPCGAARGGTG-RVPAPPRA 72
P P APG +G +S R AL PS A + G Q P ARG PAPP
Sbjct: 254 PHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPAP---ARGDFAYAAPAPPDG 310
Query: 73 CVC---AGSWQGHLGRAARV----------PCASHTHVGGPGP-QAGP----------AC 108
+ A W H G++ PCA V PGP QAGP +
Sbjct: 311 ALSHPQAPRWPPHPGKSREDRDPQRDGLPGPCA----VAQPGPAQAGPQGQGVLAPPTSQ 366
Query: 109 GFRALGSAQSPGPATAAGAPGFSRALSPGPVPPGWRAAPRAG 150
G G + P A AA P A P P PP A+ R G
Sbjct: 367 GSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQG 408
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 39.7 bits (91), Expect = 0.001
Identities = 56/192 (29%), Positives = 67/192 (34%), Gaps = 33/192 (17%)
Query: 4 RTGWLVPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGT 63
RTG P S PP+ P APG R GD G P+ + G P G A GG
Sbjct: 30 RTG-RAPPQSPPPAGPGAPGAPWRRGD-------EGPGPAGGEAGGPCGAAPGGCASGGC 81
Query: 64 GRVPAPPRACVCAGSWQGHLGR-------AARVPCASHTHVGGPGPQAGPAC---GFRAL 113
G + + SW R A+ C + + PA G RA
Sbjct: 82 GVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAG 141
Query: 114 G-SAQSPGPATAAGAPGFSRALSPGPVPPG----WRAAPRAGA------PHQRAAATGS- 161
G + P A P S S GP PG WR R GA P R G
Sbjct: 142 GLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRPGAVRKSQPPGLRRQTAGGR 201
Query: 162 ---GGSRSVGGG 170
GG+R+V G
Sbjct: 202 ARLGGARAVDPG 213
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,808,944
Number of Sequences: 37866
Number of extensions: 725902
Number of successful extensions: 7737
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 933
Number of HSP's that attempted gapping in prelim test: 5192
Number of HSP's gapped (non-prelim): 2909
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.