Search of human proteins with 169169855

Search of human proteins with 169169855

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169169855 PREDICTED: similar to hCG34808 [Homo sapiens]
         (483 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169169855 PREDICTED: similar to hCG34808 [Homo sapiens]            973   0.0  
gi|169168879 PREDICTED: similar to hCG34808 [Homo sapiens]            973   0.0  
gi|169169326 PREDICTED: similar to hCG34808 [Homo sapiens]            973   0.0  
gi|148747556 PIN2-interacting protein 1 [Homo sapiens]                383   e-106
gi|104526627 triadin [Homo sapiens]                                    48   2e-05
gi|4557509 cylicin 2 [Homo sapiens]                                    43   7e-04
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f...    43   7e-04
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e...    43   7e-04
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d...    43   7e-04
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ...    43   7e-04
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ...    43   7e-04
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]            41   0.003
gi|50962882 G patch domain containing 8 [Homo sapiens]                 39   0.008
gi|39725952 angiogenic factor VG5Q [Homo sapiens]                      39   0.014
gi|27734775 hypothetical protein LOC286499 [Homo sapiens]              39   0.014
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...    38   0.018
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     38   0.018
gi|4885377 histone cluster 1, H1d [Homo sapiens]                       38   0.018
gi|24431975 hypothetical protein LOC26148 [Homo sapiens]               38   0.018
gi|40068059 CBF1 interacting corepressor [Homo sapiens]                38   0.023
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     38   0.023
gi|7706254 NOP58 ribonucleoprotein homolog [Homo sapiens]              38   0.023
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa...    38   0.023
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1...    37   0.031
gi|4885375 histone cluster 1, H1c [Homo sapiens]                       37   0.031
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]            37   0.040
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    37   0.040
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    37   0.040
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]          37   0.040
gi|30795231 brain abundant, membrane attached signal protein 1 [...    37   0.052

>gi|169169855 PREDICTED: similar to hCG34808 [Homo sapiens]
          Length = 483

 Score =  973 bits (2515), Expect = 0.0
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MLMLAEQQQKQKWAVNTQNTAWSNADSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQV 60
           MLMLAEQQQKQKWAVNTQNTAWSNADSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQV
Sbjct: 1   MLMLAEQQQKQKWAVNTQNTAWSNADSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQV 60

Query: 61  KNNDLGLQATINNEANWIAHQDDFNWLLAELNTCQRQETADSLDNKKKKYFSLEEIPKSS 120
           KNNDLGLQATINNEANWIAHQDDFNWLLAELNTCQRQETADSLDNKKKKYFSLEEIPKSS
Sbjct: 61  KNNDLGLQATINNEANWIAHQDDFNWLLAELNTCQRQETADSLDNKKKKYFSLEEIPKSS 120

Query: 121 KTVFIIGNLQKKRIYHLGAKQIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQV 180
           KTVFIIGNLQKKRIYHLGAKQIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQV
Sbjct: 121 KTVFIIGNLQKKRIYHLGAKQIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQV 180

Query: 181 AAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEK 240
           AAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEK
Sbjct: 181 AAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEK 240

Query: 241 RARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTT 300
           RARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTT
Sbjct: 241 RARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTT 300

Query: 301 LKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAK 360
           LKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAK
Sbjct: 301 LKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAK 360

Query: 361 DSVKARGSQMGILQLSHDKNFQVLPDAVGRSFYRDRNAMSVSTCFASSLKTVGSKVTIRG 420
           DSVKARGSQMGILQLSHDKNFQVLPDAVGRSFYRDRNAMSVSTCFASSLKTVGSKVTIRG
Sbjct: 361 DSVKARGSQMGILQLSHDKNFQVLPDAVGRSFYRDRNAMSVSTCFASSLKTVGSKVTIRG 420

Query: 421 IHRTLQREHNRHVLHFWKSRRRERAAADAQEAQALMLLAYEGEHEGAILGGISGERQGKI 480
           IHRTLQREHNRHVLHFWKSRRRERAAADAQEAQALMLLAYEGEHEGAILGGISGERQGKI
Sbjct: 421 IHRTLQREHNRHVLHFWKSRRRERAAADAQEAQALMLLAYEGEHEGAILGGISGERQGKI 480

Query: 481 MKF 483
           MKF
Sbjct: 481 MKF 483


>gi|169168879 PREDICTED: similar to hCG34808 [Homo sapiens]
          Length = 483

 Score =  973 bits (2515), Expect = 0.0
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MLMLAEQQQKQKWAVNTQNTAWSNADSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQV 60
           MLMLAEQQQKQKWAVNTQNTAWSNADSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQV
Sbjct: 1   MLMLAEQQQKQKWAVNTQNTAWSNADSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQV 60

Query: 61  KNNDLGLQATINNEANWIAHQDDFNWLLAELNTCQRQETADSLDNKKKKYFSLEEIPKSS 120
           KNNDLGLQATINNEANWIAHQDDFNWLLAELNTCQRQETADSLDNKKKKYFSLEEIPKSS
Sbjct: 61  KNNDLGLQATINNEANWIAHQDDFNWLLAELNTCQRQETADSLDNKKKKYFSLEEIPKSS 120

Query: 121 KTVFIIGNLQKKRIYHLGAKQIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQV 180
           KTVFIIGNLQKKRIYHLGAKQIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQV
Sbjct: 121 KTVFIIGNLQKKRIYHLGAKQIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQV 180

Query: 181 AAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEK 240
           AAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEK
Sbjct: 181 AAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEK 240

Query: 241 RARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTT 300
           RARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTT
Sbjct: 241 RARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTT 300

Query: 301 LKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAK 360
           LKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAK
Sbjct: 301 LKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAK 360

Query: 361 DSVKARGSQMGILQLSHDKNFQVLPDAVGRSFYRDRNAMSVSTCFASSLKTVGSKVTIRG 420
           DSVKARGSQMGILQLSHDKNFQVLPDAVGRSFYRDRNAMSVSTCFASSLKTVGSKVTIRG
Sbjct: 361 DSVKARGSQMGILQLSHDKNFQVLPDAVGRSFYRDRNAMSVSTCFASSLKTVGSKVTIRG 420

Query: 421 IHRTLQREHNRHVLHFWKSRRRERAAADAQEAQALMLLAYEGEHEGAILGGISGERQGKI 480
           IHRTLQREHNRHVLHFWKSRRRERAAADAQEAQALMLLAYEGEHEGAILGGISGERQGKI
Sbjct: 421 IHRTLQREHNRHVLHFWKSRRRERAAADAQEAQALMLLAYEGEHEGAILGGISGERQGKI 480

Query: 481 MKF 483
           MKF
Sbjct: 481 MKF 483


>gi|169169326 PREDICTED: similar to hCG34808 [Homo sapiens]
          Length = 483

 Score =  973 bits (2515), Expect = 0.0
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MLMLAEQQQKQKWAVNTQNTAWSNADSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQV 60
           MLMLAEQQQKQKWAVNTQNTAWSNADSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQV
Sbjct: 1   MLMLAEQQQKQKWAVNTQNTAWSNADSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQV 60

Query: 61  KNNDLGLQATINNEANWIAHQDDFNWLLAELNTCQRQETADSLDNKKKKYFSLEEIPKSS 120
           KNNDLGLQATINNEANWIAHQDDFNWLLAELNTCQRQETADSLDNKKKKYFSLEEIPKSS
Sbjct: 61  KNNDLGLQATINNEANWIAHQDDFNWLLAELNTCQRQETADSLDNKKKKYFSLEEIPKSS 120

Query: 121 KTVFIIGNLQKKRIYHLGAKQIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQV 180
           KTVFIIGNLQKKRIYHLGAKQIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQV
Sbjct: 121 KTVFIIGNLQKKRIYHLGAKQIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQV 180

Query: 181 AAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEK 240
           AAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEK
Sbjct: 181 AAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEK 240

Query: 241 RARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTT 300
           RARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTT
Sbjct: 241 RARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTT 300

Query: 301 LKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAK 360
           LKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAK
Sbjct: 301 LKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAK 360

Query: 361 DSVKARGSQMGILQLSHDKNFQVLPDAVGRSFYRDRNAMSVSTCFASSLKTVGSKVTIRG 420
           DSVKARGSQMGILQLSHDKNFQVLPDAVGRSFYRDRNAMSVSTCFASSLKTVGSKVTIRG
Sbjct: 361 DSVKARGSQMGILQLSHDKNFQVLPDAVGRSFYRDRNAMSVSTCFASSLKTVGSKVTIRG 420

Query: 421 IHRTLQREHNRHVLHFWKSRRRERAAADAQEAQALMLLAYEGEHEGAILGGISGERQGKI 480
           IHRTLQREHNRHVLHFWKSRRRERAAADAQEAQALMLLAYEGEHEGAILGGISGERQGKI
Sbjct: 421 IHRTLQREHNRHVLHFWKSRRRERAAADAQEAQALMLLAYEGEHEGAILGGISGERQGKI 480

Query: 481 MKF 483
           MKF
Sbjct: 481 MKF 483


>gi|148747556 PIN2-interacting protein 1 [Homo sapiens]
          Length = 328

 Score =  383 bits (984), Expect = e-106
 Identities = 207/327 (63%), Positives = 236/327 (72%), Gaps = 17/327 (5%)

Query: 1   MLMLAEQQQKQKWAVNTQNTAWSNADSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQV 60
           M MLAE+++KQKWAV+ QNTAWSN DSKFGQR+LEKM WSKG+GLG QEQG  D IKVQV
Sbjct: 1   MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV 60

Query: 61  KNNDLGLQATINNEANWIAHQDDFNWLLAELNTCQRQETADSLDNKKKKYFSLEEIPKSS 120
           KNN LGL ATINNE NWIAHQDDFN LLAELNTC  QET DS D K+KK FSLEE  K S
Sbjct: 61  KNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS 120

Query: 121 KTVFIIGNLQKKRIYHLGAKQIVTAFLGKNRNK---------------TTMTTHAFTIQE 165
           K         K +     +K  +    GK ++K                T TT AFTIQE
Sbjct: 121 KNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTIQE 180

Query: 166 RFAKRMAALKNKPQVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEG 225
            FAKRMAALKNKPQV  PG DIS+TQVE KRGKKRNKEATGK+ ESY   QPKAKR  EG
Sbjct: 181 YFAKRMAALKNKPQVPVPGSDISETQVERKRGKKRNKEATGKDVESY--LQPKAKRHTEG 238

Query: 226 KPKRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRG 285
           KP+R + Q+  +K+K A  + Q RG CW++SS+ASAQ AG+ VQPP+G+DFTLKPKK RG
Sbjct: 239 KPERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASAQDAGDHVQPPEGRDFTLKPKKRRG 298

Query: 286 KKKAAKPVEVAMDTTLKETPMKNKKKK 312
           KKK  KPVE+A D TL+ET +K KKKK
Sbjct: 299 KKKLQKPVEIAEDATLEETLVKKKKKK 325


>gi|104526627 triadin [Homo sapiens]
          Length = 729

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 64/272 (23%), Positives = 110/272 (40%), Gaps = 19/272 (6%)

Query: 106 KKKKYFSLEEIPKSSKTVFIIGNLQKKRIY---HLGAKQIVTAFLGKNRNKTTMTTHAFT 162
           KK+K+    + PK   +V     ++ K       +GA  I  A  GK   KTT T     
Sbjct: 399 KKEKHVEPAKSPKKEHSVPSDKQVKAKTERAKEEIGAVSIKKAVPGKKEEKTTKTVEQEI 458

Query: 163 IQERFAKRMAALKNKPQVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRP 222
            +E+  K  + LK+K  +      +  +  E K  + +  E   K G+   P  P+ +  
Sbjct: 459 RKEKSGKTSSILKDKEPIKGKEEKVPASLKE-KEPETKKDEKMSKAGKEVKPKPPQLQGK 517

Query: 223 KEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQ--DFTLKP 280
           KE KP+  +++K A      +     + +   E + +  +     ++       + T KP
Sbjct: 518 KEEKPE-PQIKKEAKPAISEKVQIHKQDIVKPEKTVSHGKPEEKVLKQVKAVTIEKTAKP 576

Query: 281 KKT-RGKKKAAKPVEVAMDTTLKETPMKNKKKKKGTAR--SSAKTEKEGTKRGQKCGEHW 337
           K T + + +  +P  +  D        K K   KGT+    S K + E +++  K     
Sbjct: 577 KPTKKAEHREREPPSIKTD--------KPKPTPKGTSEVTESGKKKTEISEKESKEKADM 628

Query: 338 KSLRELESSTTYEQVKALTGTAKDSVKARGSQ 369
           K LRE + ST  E ++ L    K    AR S+
Sbjct: 629 KHLREEKVSTRKESLQ-LHNVTKAEKPARVSK 659



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 60/244 (24%), Positives = 90/244 (36%), Gaps = 54/244 (22%)

Query: 175 KNKPQVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKR----PKEGKPKRD 230
           K KP+      +  K +   K  +K  KE  G   E    T  K K     P + K K D
Sbjct: 193 KEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKEVQKTPSKPKEKED 252

Query: 231 KVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKP--------KK 282
           K + + SK ++      CR +           G    + PP   +   +P        +K
Sbjct: 253 KEKAAVSKHEQKDQYAFCRYMIDIFVHGDLKPGQSPAIPPPLPTEQASRPTPASPALEEK 312

Query: 283 TRGKKKAAKPV------------------EVAMDTTLKETPMKNKKKKKGTARSSAKT-- 322
              KKKA K V                  E A+D   KE P K  + K+GT + +A+   
Sbjct: 313 EGEKKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKKE-PGKASETKQGTVKIAAQAAA 371

Query: 323 ----EKEGTKRGQKCG-----------------EHWKSLRELESSTTYEQVKALTGTAKD 361
               +KE +K+ +K                   E  KS ++  S  + +QVKA T  AK+
Sbjct: 372 KKDEKKEDSKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPKKEHSVPSDKQVKAKTERAKE 431

Query: 362 SVKA 365
            + A
Sbjct: 432 EIGA 435


>gi|4557509 cylicin 2 [Homo sapiens]
          Length = 348

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 8/168 (4%)

Query: 172 AALKNKPQVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDK 231
           +A +++ +      D  K + +  +GK    E+ G+ G +   ++   K  K+GK    +
Sbjct: 174 SATESEDEKGGAKKDNKKDKKDSNKGKDSATESEGEKGGTEKDSKKGKKDSKKGKDSAIE 233

Query: 232 VQKSASKEKRARTDGQCRGLCWEESSEAS------AQGAGNCVQPPDGQDFTLKPKKTRG 285
           +Q   + EK+   DG+      +ES +A        +G  +  +P      +    K   
Sbjct: 234 LQAVKADEKKDE-DGKKDANKGDESKDAKKDAKEIKKGKKDKKKPSSTDSDSKDDVKKES 292

Query: 286 KKKAAKPV-EVAMDTTLKETPMKNKKKKKGTARSSAKTEKEGTKRGQK 332
           KK A K   +VA   T KE+    K  KK   + + K  K+  K+ +K
Sbjct: 293 KKDATKDAKKVAKKDTEKESADSKKDAKKNAKKDAKKDAKKNAKKDEK 340


>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
            [Homo sapiens]
          Length = 1412

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 22/186 (11%)

Query: 141  QIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQVAAPGPDISKTQVECKRGKKR 200
            +++T  L + R K   TT   + +   +++     ++P    P            R KK+
Sbjct: 1241 KVLTELLEQERKKVVDTTKESSRKGWESRKRKLSGDQPAARTP------------RSKKK 1288

Query: 201  NKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEAS 260
             K   G+ GE+    + K     +GK KRDK      KEK+ +     +G   +E  E  
Sbjct: 1289 KKLGAGEGGEASVSPE-KTSTTSKGKAKRDKASGDV-KEKKGKGSLGSQG-AKDEPEEEL 1345

Query: 261  AQGAGNCVQPPDGQDFTLKPKKTRGK------KKAAKPVEVAMDTTLKETP-MKNKKKKK 313
             +G G           + K KK   K      KK  K       T   E+P  K KKKKK
Sbjct: 1346 QKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKK 1405

Query: 314  GTARSS 319
             TA  +
Sbjct: 1406 KTAEQT 1411


>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
            [Homo sapiens]
          Length = 1451

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 22/186 (11%)

Query: 141  QIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQVAAPGPDISKTQVECKRGKKR 200
            +++T  L + R K   TT   + +   +++     ++P    P            R KK+
Sbjct: 1280 KVLTELLEQERKKVVDTTKESSRKGWESRKRKLSGDQPAARTP------------RSKKK 1327

Query: 201  NKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEAS 260
             K   G+ GE+    + K     +GK KRDK      KEK+ +     +G   +E  E  
Sbjct: 1328 KKLGAGEGGEASVSPE-KTSTTSKGKAKRDKASGDV-KEKKGKGSLGSQG-AKDEPEEEL 1384

Query: 261  AQGAGNCVQPPDGQDFTLKPKKTRGK------KKAAKPVEVAMDTTLKETP-MKNKKKKK 313
             +G G           + K KK   K      KK  K       T   E+P  K KKKKK
Sbjct: 1385 QKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKK 1444

Query: 314  GTARSS 319
             TA  +
Sbjct: 1445 KTAEQT 1450


>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
            [Homo sapiens]
          Length = 1488

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 22/186 (11%)

Query: 141  QIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQVAAPGPDISKTQVECKRGKKR 200
            +++T  L + R K   TT   + +   +++     ++P    P            R KK+
Sbjct: 1317 KVLTELLEQERKKVVDTTKESSRKGWESRKRKLSGDQPAARTP------------RSKKK 1364

Query: 201  NKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEAS 260
             K   G+ GE+    + K     +GK KRDK      KEK+ +     +G   +E  E  
Sbjct: 1365 KKLGAGEGGEASVSPE-KTSTTSKGKAKRDKASGDV-KEKKGKGSLGSQG-AKDEPEEEL 1421

Query: 261  AQGAGNCVQPPDGQDFTLKPKKTRGK------KKAAKPVEVAMDTTLKETP-MKNKKKKK 313
             +G G           + K KK   K      KK  K       T   E+P  K KKKKK
Sbjct: 1422 QKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKK 1481

Query: 314  GTARSS 319
             TA  +
Sbjct: 1482 KTAEQT 1487


>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
            sapiens]
          Length = 1411

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 22/186 (11%)

Query: 141  QIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQVAAPGPDISKTQVECKRGKKR 200
            +++T  L + R K   TT   + +   +++     ++P    P            R KK+
Sbjct: 1240 KVLTELLEQERKKVVDTTKESSRKGWESRKRKLSGDQPAARTP------------RSKKK 1287

Query: 201  NKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEAS 260
             K   G+ GE+    + K     +GK KRDK      KEK+ +     +G   +E  E  
Sbjct: 1288 KKLGAGEGGEASVSPE-KTSTTSKGKAKRDKASGDV-KEKKGKGSLGSQG-AKDEPEEEL 1344

Query: 261  AQGAGNCVQPPDGQDFTLKPKKTRGK------KKAAKPVEVAMDTTLKETP-MKNKKKKK 313
             +G G           + K KK   K      KK  K       T   E+P  K KKKKK
Sbjct: 1345 QKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKK 1404

Query: 314  GTARSS 319
             TA  +
Sbjct: 1405 KTAEQT 1410


>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
            sapiens]
          Length = 1450

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 22/186 (11%)

Query: 141  QIVTAFLGKNRNKTTMTTHAFTIQERFAKRMAALKNKPQVAAPGPDISKTQVECKRGKKR 200
            +++T  L + R K   TT   + +   +++     ++P    P            R KK+
Sbjct: 1279 KVLTELLEQERKKVVDTTKESSRKGWESRKRKLSGDQPAARTP------------RSKKK 1326

Query: 201  NKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEAS 260
             K   G+ GE+    + K     +GK KRDK      KEK+ +     +G   +E  E  
Sbjct: 1327 KKLGAGEGGEASVSPE-KTSTTSKGKAKRDKASGDV-KEKKGKGSLGSQG-AKDEPEEEL 1383

Query: 261  AQGAGNCVQPPDGQDFTLKPKKTRGK------KKAAKPVEVAMDTTLKETP-MKNKKKKK 313
             +G G           + K KK   K      KK  K       T   E+P  K KKKKK
Sbjct: 1384 QKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKK 1443

Query: 314  GTARSS 319
             TA  +
Sbjct: 1444 KTAEQT 1449


>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 7/148 (4%)

Query: 195 KRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWE 254
           K  KKR K   GK  E     + + +R K+ K +R+K ++   KEK+ R   Q RG    
Sbjct: 61  KEKKKRKKRERGKERE-----RKRKEREKQRKERREKERRKRKKEKKKRERKQ-RGRRER 114

Query: 255 ESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTTLKETPMKNKKKKKG 314
           +  +   +      Q  + +    + KK R ++K  K      +   K+   + ++KK+ 
Sbjct: 115 KKKKERKERERENKQRRERKRKKRRKKKRRKERKREKE-RGKRERKRKKRKKEEREKKRE 173

Query: 315 TARSSAKTEKEGTKRGQKCGEHWKSLRE 342
             R   K E+E  +R ++  E  K  R+
Sbjct: 174 RNRKERKKERERKERRERKKERKKERRK 201



 Score = 37.0 bits (84), Expect = 0.040
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 25/159 (15%)

Query: 190 TQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPK------RDKVQKSASKEKRAR 243
           TQ E +R K+R +    K        + + K+ K+ + K      R++ +K   K+++ R
Sbjct: 30  TQRESERKKERREREKRKREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKER 89

Query: 244 TDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTTLKE 303
            + + R    E+      Q                + ++ R KKK  K  E       + 
Sbjct: 90  REKERRKRKKEKKKRERKQ----------------RGRRERKKKKERKERE---RENKQR 130

Query: 304 TPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRE 342
              K KK++K   R   K EKE  KR +K  +  K  RE
Sbjct: 131 RERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEERE 169



 Score = 32.7 bits (73), Expect = 0.75
 Identities = 34/193 (17%), Positives = 83/193 (43%), Gaps = 7/193 (3%)

Query: 175 KNKPQVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQK 234
           + K +    G    K + + +RGK+R ++   +  +     + + ++ K+ K KR++ Q+
Sbjct: 50  REKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKKEKKKRERKQR 109

Query: 235 SASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVE 294
              +E++ + + + R    ++  E   +      +  + +    + K+ R +KK  K   
Sbjct: 110 -GRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKK--- 165

Query: 295 VAMDTTLKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKA 354
              +   K+     K++KK   R   +  K+  K+ ++  +  K  R+ +  T  +  + 
Sbjct: 166 ---EEREKKRERNRKERKKERERKERRERKKERKKERRKKKERKKDRKTDRQTDSQVFRP 222

Query: 355 LTGTAKDSVKARG 367
           L  +A + V   G
Sbjct: 223 LRESAFNRVTVTG 235


>gi|50962882 G patch domain containing 8 [Homo sapiens]
          Length = 1502

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 55/244 (22%), Positives = 92/244 (37%), Gaps = 45/244 (18%)

Query: 169 KRMAALKNKPQVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQ---PKAKRPKEG 225
           K   + K+K +  A   + S      ++ KKR K    KN  S P      PK + P  G
Sbjct: 680 KHKKSSKHKRKHKADTEEKSSKAESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSG 739

Query: 226 KPKRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQ--GAGNCVQPPDGQDFTLKPKKT 283
            P   +      + +RA+ D Q R L  EE S       G G+  Q   G       +K 
Sbjct: 740 SPAPPR------RRRRAQDDSQRRSLPAEEGSSGKKDEGGGGSSSQDHGG-------RKH 786

Query: 284 RGKKKAAKPVEVAMDTTLKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLR-E 342
           +G                 E P  + +++ GT RSS  + +     G +  +   S R  
Sbjct: 787 KG-----------------ELPPSSCQRRAGTKRSSRSSHRSQPSSGDEDSDDASSHRLH 829

Query: 343 LESSTTYEQVKALTGTAKDSVKARGSQMGILQLSHDKNFQVLPDAVGRSFYRDRNAMSVS 402
            +S + Y + +    +  +  ++R S+ G    SH  +         RS+    +A S  
Sbjct: 830 QKSPSQYSEEEEEEDSGSEHSRSR-SRSGRRHSSHRSS--------RRSYSSSSDASSDQ 880

Query: 403 TCFA 406
           +C++
Sbjct: 881 SCYS 884



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 30 GQRILEKMEWSKGRGLGVQEQGGPDDIKVQVKNNDLGL 67
          G R+L+K  W  G+GLG   QG  D I + VK + +G+
Sbjct: 44 GHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGM 81


>gi|39725952 angiogenic factor VG5Q [Homo sapiens]
          Length = 714

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 26  DSKFGQRILEKMEWSKGRGLGVQEQGGPDDIKVQVKNNDLGL 67
           DS  G+++LEKM W KG GLG    G    I++Q++    GL
Sbjct: 619 DSNKGRKMLEKMGWKKGEGLGKDGGGMKTPIQLQLRRTHAGL 660


>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
          Length = 248

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 193 ECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLC 252
           E K+GK+R K+       S   T       KE   K+ K +    KEK  R+  + R   
Sbjct: 124 EKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEKDVRSLSKKRKKS 183

Query: 253 WEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTTLKETPMKNKKKK 312
           + +    S++ +    +    +D   K K+   +++ AK           +   K KKKK
Sbjct: 184 YPDDKPLSSESSS---ESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKKK 240

Query: 313 KGTARSS 319
            G++  S
Sbjct: 241 SGSSHKS 247



 Score = 37.4 bits (85), Expect = 0.031
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 15/165 (9%)

Query: 189 KTQVECKR-GKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKS--ASKEKRARTD 245
           K Q+E K+ G K   E   K  E++          KE +  R+K+     +S +KR R  
Sbjct: 45  KKQLENKKTGSKALAEFEEKMNENWK---------KELEKSREKLLSGNESSSKKRERKK 95

Query: 246 GQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTTLKETP 305
            + +  C   SS +S+  + +     D +D   K  K R KKK          T   E+ 
Sbjct: 96  KRKKKSCRSSSSSSSSDSSSSS---SDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESE 152

Query: 306 MKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYE 350
            K   KKK  ++   + EK+     +K  + +   + L S ++ E
Sbjct: 153 SKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDDKPLSSESSSE 197


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
           sapiens]
          Length = 2997

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 18/144 (12%)

Query: 186 DISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKR-PKEGK-PKRDKVQKSASKEKRAR 243
           ++++  ++  + +K+ K+ +    +   P +PK K+ PKE K PK  K+ K   KEK+A+
Sbjct: 628 ELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEP-KEKKAK 686

Query: 244 TDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTTLKE 303
           T          +SS+ S+       + PD +   LK K  +GK + ++  +  +D T   
Sbjct: 687 T-----ATPKPKSSKKSSN------KKPDSEASALKKKVNKGKTEGSENSD--LDKTPPP 733

Query: 304 TPMKNKKKKKGT--ARSSAKTEKE 325
           +P   + +  G    RSS + +++
Sbjct: 734 SPPPEEDEDPGVQKRRSSRQVKRK 757


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 14/87 (16%)

Query: 169  KRMAALKNKPQVAAPGPDISKTQVECKRGKKRN--------KEATGKNGESYPPTQPKAK 220
            K  A  K K +VA   PD +K +   K  +K+         KE   K  E  P T+ KAK
Sbjct: 917  KEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAK 976

Query: 221  R------PKEGKPKRDKVQKSASKEKR 241
                    +  KPK +K +KS+S +++
Sbjct: 977  EDDKTLSKEPSKPKAEKAEKSSSTDQK 1003



 Score = 33.1 bits (74), Expect = 0.58
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 12/168 (7%)

Query: 168 AKRMAALKNKPQVAAPGPDISKTQVECKRGKKRNKEATGK---NGESYPPTQPKAKRPKE 224
           AK  A  K+  +  +P  + +K+  E K   K   ++  +     ++  PT+ +AK P++
Sbjct: 592 AKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEK 651

Query: 225 GKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTR 284
            K    +  KS  K K              +S E +        + P+     +K ++ +
Sbjct: 652 AKSPEKEEAKSPEKAKSPVK-------AEAKSPEKAKSPVKAEAKSPEKAKSPVK-EEAK 703

Query: 285 GKKKAAKPV-EVAMDTTLKETPMKNKKKKKGTARSSAKTEKEGTKRGQ 331
             +KA  PV E A      ++P+K + K    A+S  K E +  ++ +
Sbjct: 704 SPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAK 751



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 10/152 (6%)

Query: 178 PQVAAPGPDISKTQVEC--KRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKS 235
           P+   P  + +++  +   ++ K   KE      ++  P +  AK P++  PK+++V KS
Sbjct: 764 PEAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEV-KS 822

Query: 236 ASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLK--PKKTRGKKKAAKPV 293
             KE+    + + +    E   +A  + A    +  + +D   +  PKK   K K  +  
Sbjct: 823 PVKEEEKPQEVKVK----EPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKK 878

Query: 294 EVAMDTTLKETPMKNKKKKKGTARSSAKTEKE 325
           E A++   KE+ ++ KK++    +     EKE
Sbjct: 879 EPAVEKP-KESKVEAKKEEAEDKKKVPTPEKE 909



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 40/164 (24%), Positives = 59/164 (35%), Gaps = 28/164 (17%)

Query: 174 LKNKPQVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQ 233
           +  K +V +P  +  K Q      + + KE   K  E   P  PK +  K+ K K +  +
Sbjct: 814 IPKKEEVKSPVKEEEKPQ------EVKVKEPPKKAEEEKAPATPKTEEKKDSK-KEEAPK 866

Query: 234 KSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPV 293
           K A K K             EE  E + +           ++   K K    +K+A   V
Sbjct: 867 KEAPKPKV------------EEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKV 914

Query: 294 EVAMDTTLKETP---------MKNKKKKKGTARSSAKTEKEGTK 328
           EV  D   KE            K K+  K   +  A  EK+ TK
Sbjct: 915 EVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTK 958



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 10/177 (5%)

Query: 175 KNKPQVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQK 234
           K++ +         +TQV  +  ++  KEA  + G+     + +     E + K    ++
Sbjct: 449 KSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEE 508

Query: 235 SASKEK--------RARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPK-KTRG 285
           +AS EK         A++  + +    EE+   +   +    + P  ++    P+ K+  
Sbjct: 509 AASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPE 568

Query: 286 KKKAAKPVEVAMDTTLKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRE 342
           K++A  P EV      K +P K + K    A+S  K +    +  +   E    ++E
Sbjct: 569 KEEAKSPAEVKSPEKAK-SPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKE 624


>gi|4885377 histone cluster 1, H1d [Homo sapiens]
          Length = 221

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 177 KPQVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSA 236
           KP  AA    ++K+    K+ K    +   K+       +PKA +PK GKPK  K +K+A
Sbjct: 161 KPATAAGTKKVAKS---AKKVKTPQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAA 217

Query: 237 SKEK 240
            K+K
Sbjct: 218 PKKK 221



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 29/176 (16%)

Query: 164 QERFAKRMAALKNKPQVAAPGPDISKTQVECKRGKKR--------NKEATGKNGESYPPT 215
           +ER    +AALK    +AA G D+ K     K G K           + TG +G S+   
Sbjct: 53  KERSGVSLAALKKA--LAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASG-SFKLN 109

Query: 216 QPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQD 275
           +  A    EGKPK  K    A+K ++        G   +    A A      ++      
Sbjct: 110 KKAASG--EGKPKAKKA--GAAKPRKPA------GAAKKPKKVAGAATPKKSIKKT---- 155

Query: 276 FTLKPKKTRGKKKAAKPVEVAMDTTLKETPMKNKKKKKGTARSSAKTEKEGTKRGQ 331
               PKK +    AA   +VA      +TP   K  K      + K +    K G+
Sbjct: 156 ----PKKVKKPATAAGTKKVAKSAKKVKTPQPKKAAKSPAKAKAPKPKAAKPKSGK 207


>gi|24431975 hypothetical protein LOC26148 [Homo sapiens]
          Length = 1247

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 20/124 (16%)

Query: 214  PTQPKAK---RPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQP 270
            P +PK+    + ++GK   + + K+  + KR RT+G         SS   ++  G  V+ 
Sbjct: 1059 PVKPKSTEGMKGRKGKQVSEILPKAEVQSKRKRTEG---------SSPPDSKNKGPTVKA 1109

Query: 271  -----PDGQDFTLKPKKTRGKKKAAKPVEVAMDTTLKETPMKNKKKKKGTARSSAKTEKE 325
                  DG   T   K+   + ++++P +    T+LKE  +K  KK  G +   ++ EKE
Sbjct: 1110 SKEKHADGATKTPAAKRPAARDRSSQPPK---KTSLKENKVKIPKKSAGKSCPPSRKEKE 1166

Query: 326  GTKR 329
             T +
Sbjct: 1167 NTNK 1170


>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
          Length = 450

 Score = 37.7 bits (86), Expect = 0.023
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 220 KRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLK 279
           K+ K+   K+ K QKS SK K+ ++           SS +S+  +    +     +   K
Sbjct: 233 KKKKKKDRKKKKFQKSRSKHKKHKSSSS-------SSSSSSSSSSTETSESSSESESNNK 285

Query: 280 PKKTRGKKKAAKPVEVAMDTTLKETPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKS 339
            KK + KK+         ++  +E   K+KK+K     SS+   +E  K   +  +H +S
Sbjct: 286 EKKIQRKKRKKNKCSGHNNSDSEEKD-KSKKRKLHEELSSSHHNREKAKEKPRFLKH-ES 343

Query: 340 LRELESSTTYEQVKALTGTAKDSVKARGSQ 369
            RE +S  ++      + T K S + RGS+
Sbjct: 344 SRE-DSKWSHSDSDKKSRTHKHSPEKRGSE 372


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 37.7 bits (86), Expect = 0.023
 Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 25/197 (12%)

Query: 188 SKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGK-PKRDKVQKSASKE-KRARTD 245
           S+++ + ++ +  +KE +     S   ++ K+K   E K    D V K  S+   R ++ 
Sbjct: 238 SRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSK 297

Query: 246 GQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTTLKETP 305
            + R    E   E   +G+   V     Q+ +L+  ++R + K           +   + 
Sbjct: 298 SKSRSRSQERRVEEEKRGS---VSRGRSQEKSLRQSRSRSRSKGGS-------RSRSRSR 347

Query: 306 MKNKKKKKGTARS-------------SAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQV 352
            K+K K+KG  RS             S ++ K G+KR  K G   K  +E    +     
Sbjct: 348 SKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSP 407

Query: 353 KALTGTAKDSVKARGSQ 369
                  ++  K+  SQ
Sbjct: 408 SRSVSKEREHAKSESSQ 424



 Score = 35.8 bits (81), Expect = 0.089
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 169 KRMAALKNKPQVAAPGPDISKTQVECKRGKKRNKEA-TGKNGESYPPTQPKAKRPKEGKP 227
           KR    +++ +  +     SK++   KRG KR+ +A + K  +     + +++ P     
Sbjct: 353 KRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVS 412

Query: 228 KRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKK 287
           K  +  KS S ++  R + +  G   E  S + +        P + +  +    KTR + 
Sbjct: 413 KEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRS 472

Query: 288 KA 289
           K+
Sbjct: 473 KS 474



 Score = 34.7 bits (78), Expect = 0.20
 Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 15/145 (10%)

Query: 195 KRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTD-----GQCR 249
           ++G+KR++E +     S    + K++R ++   KRD    S+ K+K+  TD        R
Sbjct: 354 RKGRKRSREESRSRSRS----RSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSR 409

Query: 250 GLCWE----ESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEV-AMDTTLKET 304
            +  E    +S  +  +G G        Q+ T    ++  K K   P E  +   +  +T
Sbjct: 410 SVSKEREHAKSESSQREGRGESENAGTNQE-TRSRSRSNSKSKPNLPSESRSRSKSASKT 468

Query: 305 PMKNKKKKKGTARSSAKTEKEGTKR 329
             ++K + +  +RS +++      R
Sbjct: 469 RSRSKSRSRSASRSPSRSRSRSHSR 493


>gi|7706254 NOP58 ribonucleoprotein homolog [Homo sapiens]
          Length = 529

 Score = 37.7 bits (86), Expect = 0.023
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 24/139 (17%)

Query: 179 QVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASK 238
           +++  G  ++KT+   K   K   +    +G+S  PT  K KR  E   K D++ +  +K
Sbjct: 405 KISGTGKALAKTE---KYEHKSEVKTYDPSGDSTLPTCSK-KRKIEQVDKEDEITEKKAK 460

Query: 239 EKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMD 298
           + + +   +      EE  E  A+           ++ ++K KK RGKKK  K   ++ +
Sbjct: 461 KAKIKVKVE------EEEEEKVAEE----------EETSVKKKKKRGKKKHIKEEPLSEE 504

Query: 299 ----TTLKETPMKNKKKKK 313
               +T   +P K KKKKK
Sbjct: 505 EPCTSTAIASPEKKKKKKK 523


>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
           sapiens]
          Length = 2715

 Score = 37.7 bits (86), Expect = 0.023
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 7/158 (4%)

Query: 174 LKNKPQVAAPGPDISKTQVECKRGKKRNKEATGKNGESYPPTQP-KAKRPKEGKPKRDKV 232
           +K K +   PG      Q    +G K  +    +  E   P +P KAK PK+ K  ++  
Sbjct: 92  VKKKRKKKEPGD-----QEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPK 146

Query: 233 QKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKP 292
           QK  +K+ R   +        E+ S   +       +    Q  T   KK +GK+K+   
Sbjct: 147 QKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGPTPVEKKKKGKRKSETT 206

Query: 293 VE-VAMDTTLKETPMKNKKKKKGTARSSAKTEKEGTKR 329
           VE + +D  L    +++ ++   +  S  +      KR
Sbjct: 207 VESLELDQGLTNPSLRSPEESTESTDSQKRRSGRQVKR 244


>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
           [Homo sapiens]
          Length = 651

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 196 RGKKRNKEATGKNGESYPPTQPKA-KRPKEGKPKRDKVQKSASKEKR-ARTDGQCRGLCW 253
           R   RN +   KN +     +        E + +  + QK   K+K+ ++TD +      
Sbjct: 381 RNDSRNLKKASKNDDKKKDAKKITFSTDSESELESKESQKDEKKDKKDSKTDNKKSVKND 440

Query: 254 EESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTTLKETPMKNKKKKK 313
           EES++A ++  G+  +    +    K  K   KKK AK      ++T  E+ ++ KK KK
Sbjct: 441 EESTDADSEPKGDSKKGKKDEKKGKKDSKKDDKKKDAKK---NAESTEMESDLELKKDKK 497

Query: 314 GTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAKDSVKARGS 368
            +       EK+G+K+  K     K  R+   ST  E  ++     K S K +GS
Sbjct: 498 HS------KEKKGSKKDIK-----KDARKDTESTDAEFDESSKTGFKTSTKIKGS 541


>gi|4885375 histone cluster 1, H1c [Homo sapiens]
          Length = 213

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 17/121 (14%)

Query: 169 KRMAALKNKPQVAAPGPDISKTQV-ECKRGKKRNKEATGKNGESYPPTQPKAKRPKEGKP 227
           K+ A+ + KP+V   G    K  V   K+ KK    AT K  +S   T  KAK+P     
Sbjct: 109 KKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPK--KSAKKTPKKAKKPAAATV 166

Query: 228 KRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKK 287
            + KV KS  K K A+              + +A+ A   V+P   +   +KPKK   KK
Sbjct: 167 TK-KVAKSPKKAKVAKP-------------KKAAKSAAKAVKPKAAKPKVVKPKKAAPKK 212

Query: 288 K 288
           K
Sbjct: 213 K 213



 Score = 33.5 bits (75), Expect = 0.44
 Identities = 50/179 (27%), Positives = 68/179 (37%), Gaps = 54/179 (30%)

Query: 164 QERFAKRMAALKNKPQVAAPGPDISKTQVECKRGKKR--------NKEATGKNGE----- 210
           +ER    +AALK    +AA G D+ K     K G K           + TG +G      
Sbjct: 52  KERSGVSLAALKKA--LAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNK 109

Query: 211 --SYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCV 268
             +    +PK K+    KPK  K   +A K K+A                  A GA    
Sbjct: 110 KAASGEAKPKVKKAGGTKPK--KPVGAAKKPKKA------------------AGGA---- 145

Query: 269 QPPDGQDFTLKPKKTRGK--KKAAKPVEVAMDTTLKETPMKNK-KKKKGTARSSAKTEK 324
                      PKK+  K  KKA KP    +   + ++P K K  K K  A+S+AK  K
Sbjct: 146 ----------TPKKSAKKTPKKAKKPAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVK 194


>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 16/169 (9%)

Query: 195 KRGKKRNKEATGKNGESYPPTQPKAKRPKE----GKPKRDKVQKSA-SKEKRARTDGQCR 249
           KR ++R KE   + G+     + K +R KE     K +R+K  K    KEKR + + + R
Sbjct: 68  KRKREREKERKRERGKK----EKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKKER 123

Query: 250 GLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTTLKETPMKNK 309
           G   +E  E   +      +  + +    + +K R +K+  K     +    +E   K +
Sbjct: 124 GRTSKEGKERERKEERKREERKERERKKEEREKERERKERKKRERKQVGEKEEERKEKER 183

Query: 310 KKKKGTARSSAKTEKE-------GTKRGQKCGEHWKSLRELESSTTYEQ 351
           K++K   R+  + +KE         K+ +K  E  K  R+ +  T + +
Sbjct: 184 KERKKRERNRKERKKERERKERRERKKERKKKEERKKERQKDRQTNWRE 232



 Score = 33.5 bits (75), Expect = 0.44
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 193 ECKRGKKRNKEATGKNGESYPPTQPKAKRP-----KEGKPKRDKVQKSASKEKRARTDGQ 247
           E +  KKR +E   K GE     + K K+      KEGK +  K ++   + K      +
Sbjct: 93  EERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKERERKKE 152

Query: 248 CRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTRGKKKAAKPVEVAMDTTLKETPMK 307
            R    E+  E   +      Q  + ++   + ++   KK+     E   +   KE   +
Sbjct: 153 ER----EKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERKERRER 208

Query: 308 NKKKKKGTARSSAK--------TEKEGTKRGQK 332
            K++KK   R   +         EKE  KR +K
Sbjct: 209 KKERKKKEERKKERQKDRQTNWREKERGKRERK 241


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
           sapiens]
          Length = 2462

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 32/168 (19%), Positives = 74/168 (44%), Gaps = 15/168 (8%)

Query: 195 KRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWE 254
           +RGK + ++   +  +     QP  +  +E K +++K +++  +E++   +     L  E
Sbjct: 489 RRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKEKEAEKEEEKPEVENDKEDLLKE 548

Query: 255 ESSEASAQGAGNCVQPPDGQDFTLKPKKT---RGKKKAAKPVEVAMDTTLKE--TPMKNK 309
           ++ + S +         + +    K +KT   +G++K      +A +   +E  TP ++ 
Sbjct: 549 KTDDTSGE------DNDEKEAVASKGRKTANSQGRRKGRITRSMANEANSEEAITPQQSA 602

Query: 310 KKKKGTARSSAK---TEKEGTKRG-QKCGEHWKSLRELESSTTYEQVK 353
           +        S++    E E  K+G  + G +W ++  +  S T  Q K
Sbjct: 603 ELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCK 650


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
           sapiens]
          Length = 2524

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 32/168 (19%), Positives = 74/168 (44%), Gaps = 15/168 (8%)

Query: 195 KRGKKRNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWE 254
           +RGK + ++   +  +     QP  +  +E K +++K +++  +E++   +     L  E
Sbjct: 489 RRGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKEKEAEKEEEKPEVENDKEDLLKE 548

Query: 255 ESSEASAQGAGNCVQPPDGQDFTLKPKKT---RGKKKAAKPVEVAMDTTLKE--TPMKNK 309
           ++ + S +         + +    K +KT   +G++K      +A +   +E  TP ++ 
Sbjct: 549 KTDDTSGE------DNDEKEAVASKGRKTANSQGRRKGRITRSMANEANSEEAITPQQSA 602

Query: 310 KKKKGTARSSAK---TEKEGTKRG-QKCGEHWKSLRELESSTTYEQVK 353
           +        S++    E E  K+G  + G +W ++  +  S T  Q K
Sbjct: 603 ELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCK 650


>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
          Length = 334

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 10/164 (6%)

Query: 200 RNKEATGKNGESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEA 259
           R +     +  SY   + +++    G+ K  +VQ+S SK +  R+  + R      SSE 
Sbjct: 64  RRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRSRSRPRLRSHSRSSER 123

Query: 260 SA----QGAGNCVQPPDGQDFTLKPK-KTRGKKKAAKPVEVAMDTTLKE-----TPMKNK 309
           S+    +      +   G+D   + K K +GK K    ++      +K       P +  
Sbjct: 124 SSHRRTRSRSRDRERRKGRDKEKREKEKDKGKDKELHNIKRGESGNIKAGLEHLPPAEQA 183

Query: 310 KKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVK 353
           K +      +A    E  K  ++  E  K  +E + +T  EQVK
Sbjct: 184 KARLQLVLEAAAKADEALKAKERNEEEAKRRKEEDQATLVEQVK 227


>gi|30795231 brain abundant, membrane attached signal protein 1
           [Homo sapiens]
          Length = 227

 Score = 36.6 bits (83), Expect = 0.052
 Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 14/184 (7%)

Query: 195 KRGKKRNKEATGKNG---ESYPPTQPKAKRPKEGKPKRDKVQKSASKEKRARTDGQC--- 248
           ++ KK    AT + G   ES P    +    KEGK K D+  +  ++EK    D      
Sbjct: 21  EKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKE 80

Query: 249 -RGLCWEESSEASAQGAGNCVQPPDGQDFTLKP----KKTRGKKKAAKPVEVAMDTTLKE 303
                  E +E +A+      + P+ +     P    +  +  + AA P E A      E
Sbjct: 81  EAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPAAGGEAPKAAEAAAAPAESAAPAA-GE 139

Query: 304 TPMKNKKKKKGTARSSAKTEKEGTKRGQKCGEHWKSLRELESSTTYEQVKALTGTAKDSV 363
            P K + + K T   +A   +E    G    +      E   S+  ++  A T     + 
Sbjct: 140 EPSKEEGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSS--KETPAATEAPSSTP 197

Query: 364 KARG 367
           KA+G
Sbjct: 198 KAQG 201



 Score = 31.6 bits (70), Expect = 1.7
 Identities = 22/100 (22%), Positives = 36/100 (36%)

Query: 225 GKPKRDKVQKSASKEKRARTDGQCRGLCWEESSEASAQGAGNCVQPPDGQDFTLKPKKTR 284
           GK  + K   + + EK    D +  G   EE             +P + ++   KP +  
Sbjct: 3   GKLSKKKKGYNVNDEKAKEKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQDA 62

Query: 285 GKKKAAKPVEVAMDTTLKETPMKNKKKKKGTARSSAKTEK 324
             K   K  E       +E P    +K +G A + A+  K
Sbjct: 63  EGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPK 102


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.126    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,471,317
Number of Sequences: 37866
Number of extensions: 837508
Number of successful extensions: 3874
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 3284
Number of HSP's gapped (non-prelim): 642
length of query: 483
length of database: 18,247,518
effective HSP length: 106
effective length of query: 377
effective length of database: 14,233,722
effective search space: 5366113194
effective search space used: 5366113194
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.