Guide to the Human Genome
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Name: LOC100128588 Sequence: fasta or formatted (483aa) NCBI GI: 169168879
Description:

PREDICTED: similar to hCG34808

Not currently referenced in the text

Other entries for this name:
alt mRNA {483aa} PREDICTED: similar to hCG34808
alt mRNA {483aa} PREDICTED: similar to hCG34808
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         43           3
 C cysteine            1.4          7           1
 D aspartate           3.9         19           2
 E glutamate           6.8         33           2
 F phenylalanine       2.7         13           1
 G glycine             7.7         37           2
 H histidine           2.1         10           1
 I isoleucine          3.5         17           2
 K lysine             13.3         64           5
 L leucine             6.4         31           2
 M methionine          2.3         11           1
 N asparagine          4.6         22           2
 P proline             3.3         16           2
 Q glutamine           6.8         33           3
 R arginine            6.4         31           3
 S serine              6.2         30           2
 T threonine           6.6         32           2
 V valine              4.1         20           1
 W tryptophan          1.7          8           1
 Y tyrosine            1.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG34808 
LOC100128588          1.000   PREDICTED: similar to hCG34808 
LOC100128588          1.000   PREDICTED: similar to hCG34808 
PINX1                 0.378   PIN2-interacting protein 1 
TRDN                  0.024   triadin 
CYLC2                 0.019   cylicin 2 
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform a ...
LOC100133599          0.017   PREDICTED: hypothetical protein 
GPATCH8               0.015   G patch domain containing 8 
AGGF1                 0.015   angiogenic factor VG5Q 
FAM133A               0.015   hypothetical protein LOC286499 
CHD7                  0.014   chromodomain helicase DNA binding protein 7 
NEFH                  0.014   neurofilament, heavy polypeptide 200kDa 
HIST1H1D              0.014   histone cluster 1, H1d 
C10orf12              0.014   hypothetical protein LOC26148 
CIR1                  0.014   CBF1 interacting corepressor 
SFRS4                 0.014   splicing factor, arginine/serine-rich 4 
NOP58                 0.014   NOP58 ribonucleoprotein homolog 
CHD6                  0.014   chromodomain helicase DNA binding protein 6 
CYLC1                 0.013   cylicin, basic protein of sperm head cytoskeleton 1...
HIST1H1C              0.013   histone cluster 1, H1c 
LOC100133599          0.013   PREDICTED: hypothetical protein 
NCOR2                 0.013   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.013   nuclear receptor co-repressor 2 isoform 1 
RSRC1                 0.013   arginine/serine-rich coiled-coil 1 
BASP1                 0.013   brain abundant, membrane attached signal protein 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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