Guide to the Human Genome
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Name: LOC100129195 Sequence: fasta or formatted (154aa) NCBI GI: 169168601
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {154aa} PREDICTED: hypothetical protein
alt mRNA {154aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          6           2
 C cysteine            4.5          7           1
 D aspartate           0.0          0           0
 E glutamate           4.5          7           1
 F phenylalanine       4.5          7           2
 G glycine             7.8         12           2
 H histidine           3.9          6           1
 I isoleucine          3.2          5           1
 K lysine              5.2          8           2
 L leucine            13.0         20           2
 M methionine          1.3          2           1
 N asparagine          1.9          3           1
 P proline            11.7         18           2
 Q glutamine           4.5          7           1
 R arginine            9.7         15           1
 S serine             10.4         16           2
 T threonine           3.2          5           1
 V valine              5.2          8           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129195          1.000   PREDICTED: hypothetical protein 
LOC100129195          0.993   PREDICTED: hypothetical protein 
LOC401399             0.023   hypothetical protein LOC401399 
MLL2                  0.020   myeloid/lymphoid or mixed-lineage leukemia 2 
COL4A3                0.017   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.017   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.017   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.017   alpha 3 type IV collagen isoform 1 precursor 
MBD6                  0.017   methyl-CpG binding domain protein 6 
LOC338758             0.017   PREDICTED: hypothetical protein 
LOC338758             0.017   PREDICTED: hypothetical protein 
LOC338758             0.017   PREDICTED: hypothetical protein 
COL17A1               0.017   alpha 1 type XVII collagen 
LOC100292008          0.017   PREDICTED: similar to ZNF668 protein 
LOC100291370          0.017   PREDICTED: hypothetical protein XP_002347637 
LOC100287385          0.017   PREDICTED: hypothetical protein XP_002343487 
PLEKHG2               0.017   common-site lymphoma/leukemia guanine nucleotide ex...
LOC100293937          0.013   PREDICTED: hypothetical protein 
LOC100290442          0.013   PREDICTED: hypothetical protein XP_002348040 
LOC100288849          0.013   PREDICTED: hypothetical protein XP_002343743 
COL16A1               0.013   alpha 1 type XVI collagen precursor 
SORBS1                0.013   sorbin and SH3 domain containing 1 isoform 4 
SORBS1                0.013   sorbin and SH3 domain containing 1 isoform 3 
ZSCAN1                0.013   zinc finger and SCAN domain containing 1 
BIN2                  0.013   bridging integrator 2 
C9orf69               0.013   hypothetical protein LOC90120 
FAM90A12              0.010   PREDICTED: hypothetical protein 
FAM90A20              0.010   PREDICTED: hypothetical protein 
DAB2IP                0.010   disabled homolog 2 interacting protein isoform 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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