Guide to the Human Genome
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Name: LOC100287385 Sequence: fasta or formatted (417aa) NCBI GI: 239745391
Description:

PREDICTED: hypothetical protein XP_002343487

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         33           3
 C cysteine            3.6         15           1
 D aspartate           2.2          9           1
 E glutamate           4.6         19           2
 F phenylalanine       2.9         12           1
 G glycine            11.0         46           2
 H histidine           4.1         17           1
 I isoleucine          2.9         12           1
 K lysine              1.9          8           1
 L leucine            14.1         59           3
 M methionine          3.1         13           1
 N asparagine          2.2          9           1
 P proline             8.6         36           3
 Q glutamine           5.0         21           2
 R arginine            9.8         41           3
 S serine              6.2         26           1
 T threonine           3.1         13           1
 V valine              3.4         14           1
 W tryptophan          3.1         13           2
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343487 
LOC100292008          0.896   PREDICTED: similar to ZNF668 protein 
LOC100291370          0.896   PREDICTED: hypothetical protein XP_002347637 
LOC100292207          0.077   PREDICTED: hypothetical protein isoform 2 
LOC100290784          0.077   PREDICTED: hypothetical protein XP_002347624 isofor...
LOC100293937          0.060   PREDICTED: hypothetical protein 
LOC100290442          0.060   PREDICTED: hypothetical protein XP_002348040 
LOC100288849          0.060   PREDICTED: hypothetical protein XP_002343743 
LOC100292207          0.051   PREDICTED: hypothetical protein isoform 1 
LOC100290784          0.051   PREDICTED: hypothetical protein XP_002347623 isofor...
LOC100291800          0.047   PREDICTED: hypothetical protein XP_002345937 
LOC100290644          0.047   PREDICTED: hypothetical protein XP_002346805 
LOC100289039          0.047   PREDICTED: hypothetical protein XP_002342675 
LOC100291242          0.028   PREDICTED: hypothetical protein XP_002348020 
LOC100287950          0.028   PREDICTED: hypothetical protein XP_002343699 
LOC100288302          0.027   PREDICTED: hypothetical protein XP_002343738 
LOC100289978          0.025   PREDICTED: hypothetical protein XP_002348035 
SRRM2                 0.018   splicing coactivator subunit SRm300 
LOC100291995          0.016   PREDICTED: hypothetical protein XP_002345272 
LOC100130667          0.011   PREDICTED: hypothetical protein 
LOC100130667          0.011   PREDICTED: hypothetical protein 
LOC100130667          0.011   PREDICTED: hypothetical protein 
GPR62                 0.011   G protein-coupled receptor 62 
KIAA1522              0.007   hypothetical protein LOC57648 
KANK4                 0.007   ankyrin repeat domain 38 
IQCC                  0.006   IQ motif containing C isoform 1 
IQCC                  0.006   IQ motif containing C isoform 2 
CLDN23                0.006   claudin 23 
LOC100129195          0.006   PREDICTED: hypothetical protein 
LOC100129195          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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