Guide to the Human Genome
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Name: LOC100290442 Sequence: fasta or formatted (134aa) NCBI GI: 239751919
Description:

PREDICTED: hypothetical protein XP_002348040

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7          9           2
 C cysteine            3.0          4           1
 D aspartate           5.2          7           1
 E glutamate           5.2          7           1
 F phenylalanine       3.0          4           2
 G glycine            10.4         14           2
 H histidine           4.5          6           2
 I isoleucine          3.0          4           1
 K lysine              0.7          1           1
 L leucine            19.4         26           3
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline             9.0         12           2
 Q glutamine          10.4         14           2
 R arginine            5.2          7           1
 S serine              6.0          8           2
 T threonine           2.2          3           1
 V valine              3.0          4           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348040 
LOC100293937          1.000   PREDICTED: hypothetical protein 
LOC100288849          1.000   PREDICTED: hypothetical protein XP_002343743 
LOC100292008          0.202   PREDICTED: similar to ZNF668 protein 
LOC100291370          0.202   PREDICTED: hypothetical protein XP_002347637 
LOC100287385          0.202   PREDICTED: hypothetical protein XP_002343487 
LOC100291800          0.166   PREDICTED: hypothetical protein XP_002345937 
LOC100290644          0.166   PREDICTED: hypothetical protein XP_002346805 
LOC100289039          0.166   PREDICTED: hypothetical protein XP_002342675 
MAP3K6                0.020   mitogen-activated protein kinase kinase kinase 6 [Ho...
HGS                   0.020   hepatocyte growth factor-regulated tyrosine kinase su...
LOC645781             0.020   PREDICTED: similar to mCG141871 
LOC645781             0.020   PREDICTED: similar to mCG141871 
LOC645781             0.020   PREDICTED: similar to mCG141871 
C20orf201             0.020   hypothetical protein LOC198437 
LOC100129195          0.016   PREDICTED: hypothetical protein 
LOC100129195          0.016   PREDICTED: hypothetical protein 
LOC100129195          0.016   PREDICTED: hypothetical protein 
ANKRD55               0.016   ankyrin repeat domain 55 isoform 1 
TOX3                  0.012   TOX high mobility group box family member 3 isoform...
TOX3                  0.012   TOX high mobility group box family member 3 isoform...
MAP3K4                0.012   mitogen-activated protein kinase kinase kinase 4 iso...
MAP3K4                0.012   mitogen-activated protein kinase kinase kinase 4 iso...
ERC1                  0.012   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.012   RAB6-interacting protein 2 isoform delta 
ATXN1                 0.008   ataxin 1 
ATXN1                 0.008   ataxin 1 
RUSC2                 0.008   RUN and SH3 domain containing 2 
RUSC2                 0.008   RUN and SH3 domain containing 2 
SEZ6L2                0.008   seizure related 6 homolog (mouse)-like 2 isoform 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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