Guide to the Human Genome
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Name: LOC728460 Sequence: fasta or formatted (220aa) NCBI GI: 169168042
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {220aa} PREDICTED: hypothetical protein
alt prot {220aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         13           2
 C cysteine            5.0         11           1
 D aspartate           3.2          7           1
 E glutamate           3.2          7           1
 F phenylalanine       4.1          9           2
 G glycine             3.6          8           1
 H histidine           5.0         11           1
 I isoleucine          5.9         13           2
 K lysine              7.7         17           2
 L leucine            12.7         28           2
 M methionine          2.7          6           2
 N asparagine          4.1          9           2
 P proline             6.8         15           2
 Q glutamine           2.3          5           1
 R arginine            5.5         12           2
 S serine              6.4         14           2
 T threonine           6.4         14           1
 V valine              5.5         12           2
 W tryptophan          1.4          3           1
 Y tyrosine            2.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728460             1.000   PREDICTED: hypothetical protein 
LOC728460             0.998   PREDICTED: hypothetical protein 
ZNF474                0.279   zinc finger protein 474 
ZNF319                0.034   zinc finger protein 319 
ZNF268                0.030   zinc finger protein 268 
ZNF358                0.030   zinc finger protein 358 
ZNF343                0.030   zinc finger protein 343 
ZNF33B                0.030   zinc finger protein 33B 
ZNF133                0.027   zinc finger protein 133 
ZNF133                0.027   zinc finger protein 133 
FAM164A               0.025   hypothetical protein LOC51101 
ZNF180                0.025   zinc finger protein 180 
ZNF33A                0.025   zinc finger protein 33A isoform b 
ZNF33A                0.025   zinc finger protein 33A isoform a 
ZNF572                0.023   zinc finger protein 572 
ZNF615                0.021   zinc finger protein 615 
LOC100287163          0.018   PREDICTED: hypothetical protein XP_002343923 
ZNF25                 0.018   zinc finger protein 25 
ZNF41                 0.018   zinc finger protein 41 
ZNF717                0.018   zinc finger protein 717 
ZNF41                 0.018   zinc finger protein 41 
ZNF700                0.018   zinc finger protein 700 
ZFP37                 0.018   zinc finger protein 37 homolog 
PRDM9                 0.018   PR domain containing 9 
ZNF434                0.018   zinc finger protein 434 
ZNF624                0.016   zinc finger protein 624 
ZNF12                 0.016   zinc finger protein 12 isoform b 
ZNF12                 0.016   zinc finger protein 12 isoform a 
ZNF175                0.016   zinc finger protein 175 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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