Guide to the Human Genome
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Name: LOC100287163 Sequence: fasta or formatted (904aa) NCBI GI: 239747141
Description:

PREDICTED: hypothetical protein XP_002343923

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.8         16           1
 C cysteine            5.8         52           2
 D aspartate           1.9         17           2
 E glutamate           9.0         81           2
 F phenylalanine       5.1         46           2
 G glycine             5.8         52           1
 H histidine           7.9         71           2
 I isoleucine          4.1         37           2
 K lysine              9.0         81           2
 L leucine             5.8         52           2
 M methionine          1.4         13           1
 N asparagine          5.0         45           2
 P proline             4.0         36           1
 Q glutamine           4.8         43           2
 R arginine            5.1         46           2
 S serine              6.3         57           2
 T threonine           9.6         87           1
 V valine              4.1         37           1
 W tryptophan          0.7          6           1
 Y tyrosine            3.2         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343923 
ZNF717                0.974   zinc finger protein 717 
ZNF268                0.407   zinc finger protein 268 
ZNF845                0.367   zinc finger protein 845 
ZNF33B                0.363   zinc finger protein 33B 
ZNF624                0.363   zinc finger protein 624 
ZNF33A                0.362   zinc finger protein 33A isoform b 
ZNF841                0.361   zinc finger protein 841 
ZNF33A                0.360   zinc finger protein 33A isoform a 
ZNF658                0.356   zinc finger protein 658 
ZNF208                0.352   zinc finger protein 208 
ZNF160                0.351   zinc finger protein 160 
ZNF160                0.351   zinc finger protein 160 
ZNF160                0.351   zinc finger protein 160 
ZNF91                 0.344   zinc finger protein 91 
ZNF836                0.343   zinc finger protein 836 
ZNF347                0.342   zinc finger protein 347 
ZNF808                0.335   zinc finger protein 808 
ZNF585A               0.333   zinc finger protein 585A 
ZNF585A               0.333   zinc finger protein 585A 
ZNF99                 0.332   zinc finger protein 99 
ZFP62                 0.331   zinc finger protein 62 homolog 
ZNF585B               0.331   zinc finger protein 585B 
ZNF616                0.327   zinc finger protein 616 
ZNF420                0.325   zinc finger protein 420 
ZNF546                0.323   zinc finger protein 546 
ZNF721                0.323   zinc finger protein 721 
ZNF43                 0.322   zinc finger protein 43 
LOC100292052          0.321   PREDICTED: similar to hCG1773661 
LOC100287226          0.321   PREDICTED: similar to hCG1773661 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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