Guide to the Human Genome
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Name: LOC728460 Sequence: fasta or formatted (220aa) NCBI GI: 169168298
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {220aa} PREDICTED: hypothetical protein
alt prot {220aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         13           2
 C cysteine            5.0         11           1
 D aspartate           3.2          7           1
 E glutamate           3.2          7           1
 F phenylalanine       4.1          9           2
 G glycine             3.6          8           1
 H histidine           5.0         11           1
 I isoleucine          5.9         13           2
 K lysine              7.7         17           2
 L leucine            12.7         28           2
 M methionine          2.7          6           2
 N asparagine          4.1          9           2
 P proline             6.8         15           2
 Q glutamine           2.7          6           2
 R arginine            5.0         11           2
 S serine              6.4         14           2
 T threonine           6.4         14           1
 V valine              5.5         12           2
 W tryptophan          1.4          3           1
 Y tyrosine            2.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728460             0.998   PREDICTED: hypothetical protein 
LOC728460             0.998   PREDICTED: hypothetical protein 
ZNF474                0.277   zinc finger protein 474 
ZNF319                0.034   zinc finger protein 319 
ZNF343                0.027   zinc finger protein 343 
ZNF268                0.027   zinc finger protein 268 
ZNF358                0.027   zinc finger protein 358 
ZNF33B                0.027   zinc finger protein 33B 
FAM164A               0.025   hypothetical protein LOC51101 
ZNF133                0.023   zinc finger protein 133 
ZNF133                0.023   zinc finger protein 133 
ZNF180                0.021   zinc finger protein 180 
ZNF33A                0.021   zinc finger protein 33A isoform b 
ZNF33A                0.021   zinc finger protein 33A isoform a 
ZNF615                0.021   zinc finger protein 615 
ZNF700                0.018   zinc finger protein 700 
ZNF572                0.018   zinc finger protein 572 
ZNF41                 0.018   zinc finger protein 41 
ZNF41                 0.018   zinc finger protein 41 
ZNF567                0.018   zinc finger protein 567 
ZNF25                 0.016   zinc finger protein 25 
ZNF624                0.016   zinc finger protein 624 
LOC100287163          0.016   PREDICTED: hypothetical protein XP_002343923 
ZNF587                0.016   zinc finger protein 587 
OSR2                  0.016   odd-skipped related 2 isoform b 
ZNF717                0.016   zinc finger protein 717 
ZBTB1                 0.016   zinc finger and BTB domain containing 1 isoform 2 [...
ZBTB1                 0.016   zinc finger and BTB domain containing 1 isoform 1 [...
ZBTB47                0.016   zinc finger protein 651 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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