Guide to the Human Genome
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Name: LOC402198 Sequence: fasta or formatted (506aa) NCBI GI: 169167744
Description:

PREDICTED: similar to hCG1641913

Not currently referenced in the text

Other entries for this name:
alt prot {506aa} PREDICTED: similar to hCG1641913
alt mRNA {506aa} PREDICTED: similar to hCG1641913
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         45           2
 C cysteine            2.6         13           1
 D aspartate           4.5         23           2
 E glutamate           6.3         32           2
 F phenylalanine       2.4         12           1
 G glycine             9.3         47           2
 H histidine           2.8         14           1
 I isoleucine          4.9         25           2
 K lysine              4.7         24           1
 L leucine             8.3         42           2
 M methionine          2.4         12           1
 N asparagine          3.8         19           1
 P proline             4.2         21           1
 Q glutamine           3.8         19           2
 R arginine            5.1         26           3
 S serine              9.5         48           2
 T threonine           4.2         21           2
 V valine              7.9         40           2
 W tryptophan          3.0         15           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1641913 
LOC402198             1.000   PREDICTED: similar to hCG1641913 
LOC402198             0.996   PREDICTED: similar to hCG1641913 
SEPHS2                0.236   selenophosphate synthetase 2 
SEPHS1                0.215   selenophosphate synthetase 1 
LOC284297             0.007   hypothetical protein LOC284297 
SNX18                 0.006   sorting nexin 18 isoform c 
SNX18                 0.006   sorting nexin 18 isoform a 
SNX18                 0.006   sorting nexin 18 isoform b 
EXOSC2                0.006   exosome component 2 
TPO                   0.005   thyroid peroxidase isoform a 
TPO                   0.005   thyroid peroxidase isoform b 
TPO                   0.005   thyroid peroxidase isoform e 
LOC100292041          0.005   PREDICTED: hypothetical protein XP_002345028 
LOC100291163          0.005   PREDICTED: hypothetical protein XP_002347755 
LOC100294460          0.005   PREDICTED: similar to ATPase, Ca++ transporting, fa...
LOC100287522          0.005   PREDICTED: hypothetical protein XP_002343528 
TACC2                 0.005   transforming, acidic coiled-coil containing protein...
TACC2                 0.005   transforming, acidic coiled-coil containing protein ...
TACC2                 0.005   transforming, acidic coiled-coil containing protein ...
TACC2                 0.005   transforming, acidic coiled-coil containing protein ...
ARHGEF9               0.004   Cdc42 guanine exchange factor 9 
MUSK                  0.004   skeletal muscle receptor tyrosine kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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