Guide to the Human Genome
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Name: SEPHS2 Sequence: fasta or formatted (448aa) NCBI GI: 15011844
Description:

selenophosphate synthetase 2

Referenced in:

Selenium Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         50           3
 C cysteine            1.8          8           1
 D aspartate           2.9         13           1
 E glutamate           6.7         30           3
 F phenylalanine       3.1         14           2
 G glycine            10.7         48           2
 H histidine           1.6          7           1
 I isoleucine          4.5         20           3
 K lysine              3.3         15           1
 L leucine             9.2         41           2
 M methionine          3.8         17           2
 N asparagine          3.6         16           1
 P proline             6.0         27           2
 Q glutamine           3.8         17           2
 R arginine            4.7         21           1
 S serine              7.6         34           2
 T threonine           5.4         24           2
 U selenocysteine      0.2          1           1
 V valine              7.6         34           2
 W tryptophan          1.1          5           1
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   selenophosphate synthetase 2 
SEPHS1                0.647   selenophosphate synthetase 1 
LOC402198             0.276   PREDICTED: similar to hCG1641913 
LOC402198             0.276   PREDICTED: similar to hCG1641913 
LOC402198             0.273   PREDICTED: similar to hCG1641913 
SORCS2                0.014   VPS10 domain receptor protein SORCS 2 
FBRS                  0.009   fibrosin 
LOC729660             0.009   PREDICTED: similar to Putative uncharacterized prot...
PGR                   0.008   progesterone receptor 
HOXA13                0.008   homeobox A13 
LOC731275             0.008   PREDICTED: similar to Putative uncharacterized prot...
LOC730036             0.008   PREDICTED: hypothetical protein 
GSTA5                 0.008   glutathione S-transferase alpha 5 
RAB11FIP1             0.007   RAB11 family interacting protein 1 isoform 3 
RAB11FIP1             0.007   RAB11 family interacting protein 1 isoform 2 
COL3A1                0.007   collagen type III alpha 1 preproprotein 
LOC100293892          0.007   PREDICTED: hypothetical protein 
GSTA2                 0.006   glutathione S-transferase alpha 2 
NKX6-1                0.006   NK6 transcription factor related, locus 1 
KLHDC7B               0.006   kelch domain containing 7B 
FAM98C                0.006   hypothetical protein LOC147965 
GRIN2D                0.006   N-methyl-D-aspartate receptor subunit 2D precursor ...
SCARF1                0.005   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.005   scavenger receptor class F, member 1 isoform 5 prec...
PGBD4                 0.005   piggyBac transposable element derived 4 
LOC100287807          0.005   PREDICTED: hypothetical protein 
LOC100287807          0.005   PREDICTED: hypothetical protein XP_002342309 
LOC100293962          0.005   PREDICTED: hypothetical protein 
LOC100294469          0.005   PREDICTED: hypothetical protein 
RNF185                0.005   ring finger protein 185 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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