Guide to the Human Genome
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Name: SEPHS1 Sequence: fasta or formatted (392aa) NCBI GI: 24797148
Description:

selenophosphate synthetase 1

Referenced in:

Selenium Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         33           2
 C cysteine            2.3          9           1
 D aspartate           4.6         18           2
 E glutamate           6.1         24           2
 F phenylalanine       3.1         12           1
 G glycine             8.2         32           2
 H histidine           2.3          9           1
 I isoleucine          5.9         23           2
 K lysine              4.6         18           1
 L leucine             9.2         36           2
 M methionine          4.6         18           2
 N asparagine          4.8         19           1
 P proline             5.4         21           1
 Q glutamine           5.1         20           2
 R arginine            4.1         16           1
 S serine              3.6         14           1
 T threonine           6.9         27           2
 V valine              8.2         32           2
 W tryptophan          1.0          4           1
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   selenophosphate synthetase 1 
SEPHS2                0.728   selenophosphate synthetase 2 
LOC402198             0.283   PREDICTED: similar to hCG1641913 
LOC402198             0.283   PREDICTED: similar to hCG1641913 
LOC402198             0.280   PREDICTED: similar to hCG1641913 
HAUS6                 0.008   HAUS augmin-like complex, subunit 6 
GSTA1                 0.007   glutathione S-transferase alpha 1 
STRN                  0.005   striatin, calmodulin binding protein 
GSTA5                 0.005   glutathione S-transferase alpha 5 
PGBD4                 0.005   piggyBac transposable element derived 4 
GSTA2                 0.005   glutathione S-transferase alpha 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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