Guide to the Human Genome
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Name: SNX18 Sequence: fasta or formatted (624aa) NCBI GI: 157057545
Description:

sorting nexin 18 isoform a

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [628aa] sorting nexin 18 isoform b
alt prot [591aa] sorting nexin 18 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         54           3
 C cysteine            1.1          7           1
 D aspartate           6.4         40           3
 E glutamate           5.8         36           2
 F phenylalanine       5.9         37           2
 G glycine             8.7         54           3
 H histidine           3.0         19           2
 I isoleucine          3.0         19           2
 K lysine              5.9         37           2
 L leucine             7.7         48           2
 M methionine          1.4          9           1
 N asparagine          2.1         13           1
 P proline             7.7         48           3
 Q glutamine           7.1         44           3
 R arginine            4.6         29           2
 S serine              7.4         46           3
 T threonine           3.7         23           1
 V valine              5.6         35           2
 W tryptophan          1.3          8           2
 Y tyrosine            2.9         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorting nexin 18 isoform a 
SNX18                 0.870   sorting nexin 18 isoform c 
SNX18                 0.870   sorting nexin 18 isoform b 
SNX33                 0.446   sorting nexin 33 
SNX9                  0.263   sorting nexin 9 
ANKRD18B              0.054   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.054   PREDICTED: ankyrin repeat domain 18B 
ANKRD18A              0.048   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.048   PREDICTED: ankyrin repeat domain 18A 
SNX30                 0.039   sorting nexin family member 30 
SNX7                  0.033   sorting nexin 7 isoform b 
SNX7                  0.033   sorting nexin 7 isoform a 
SNX8                  0.029   sorting nexin 8 
LOC100133063          0.028   PREDICTED: similar to breast cancer anti-estrogen r...
BCAR1                 0.025   breast cancer anti-estrogen resistance 1 
LOC646079             0.025   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.025   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.025   PREDICTED: similar to breast cancer anti-estrogen r...
SNX4                  0.024   sorting nexin 4 
PACSIN3               0.022   protein kinase C and casein kinase substrate in neur...
SNX1                  0.021   sorting nexin 1 isoform c 
SH3GL3                0.021   SH3-domain GRB2-like 3 
SH3GL2                0.020   SH3-domain GRB2-like 2 
PACSIN1               0.020   protein kinase C and casein kinase substrate in neur...
PACSIN2               0.020   protein kinase C and casein kinase substrate in neu...
EFS                   0.020   embryonal Fyn-associated substrate isoform 1 
SH3GL1                0.020   SH3-domain GRB2-like 1 
SNX1                  0.020   sorting nexin 1 isoform a 
SNX11                 0.020   sorting nexin 11 
SNX11                 0.020   sorting nexin 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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