Guide to the Human Genome
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Name: EXOSC2 Sequence: fasta or formatted (293aa) NCBI GI: 19923403
Description:

exosome component 2

Referenced in:

RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         15           1
 C cysteine            1.4          4           1
 D aspartate           4.1         12           1
 E glutamate           8.9         26           3
 F phenylalanine       2.0          6           1
 G glycine             8.2         24           2
 H histidine           2.4          7           1
 I isoleucine          6.5         19           2
 K lysine              5.5         16           2
 L leucine            11.3         33           3
 M methionine          3.8         11           2
 N asparagine          2.4          7           2
 P proline             3.8         11           1
 Q glutamine           3.8         11           2
 R arginine            7.5         22           3
 S serine              6.8         20           2
 T threonine           5.1         15           2
 V valine              8.5         25           2
 W tryptophan          0.7          2           1
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   exosome component 2 
LOC402198             0.011   PREDICTED: similar to hCG1641913 
LOC402198             0.011   PREDICTED: similar to hCG1641913 
LOC402198             0.011   PREDICTED: similar to hCG1641913 
GSDMA                 0.011   gasdermin 1 
LOC100292470          0.009   PREDICTED: similar to hCG1779533 
DARS                  0.007   aspartyl-tRNA synthetase 
CEP63                 0.005   centrosomal protein 63 isoform b 
CEP63                 0.005   centrosomal protein 63 isoform a 
KIAA0913              0.005   hypothetical protein LOC23053 
CYP2R1                0.005   cytochrome P450, family 2, subfamily R, polypeptide ...
INTS8                 0.005   integrator complex subunit 8 
PTPRT                 0.005   protein tyrosine phosphatase, receptor type, T isof...
PTPRT                 0.005   protein tyrosine phosphatase, receptor type, T isof...
CEP63                 0.005   centrosomal protein 63 isoform d 
CEP63                 0.005   centrosomal protein 63 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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