Guide to the Human Genome
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Name: LOC100291163 Sequence: fasta or formatted (141aa) NCBI GI: 239751205
Description:

PREDICTED: hypothetical protein XP_002347755

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         20           4
 C cysteine            0.7          1           1
 D aspartate           3.5          5           1
 E glutamate           2.1          3           1
 F phenylalanine       4.3          6           1
 G glycine            19.9         28           3
 H histidine           0.0          0           0
 I isoleucine          2.8          4           1
 K lysine              4.3          6           1
 L leucine             6.4          9           1
 M methionine          3.5          5           1
 N asparagine          0.7          1           1
 P proline             5.0          7           1
 Q glutamine           0.7          1           1
 R arginine           16.3         23           1
 S serine              4.3          6           1
 T threonine           2.1          3           1
 V valine              6.4          9           2
 W tryptophan          2.8          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347755 
LOC100292041          1.000   PREDICTED: hypothetical protein XP_002345028 
LOC100287522          1.000   PREDICTED: hypothetical protein XP_002343528 
LOC100294040          0.038   PREDICTED: hypothetical protein 
LOC100291391          0.038   PREDICTED: hypothetical protein XP_002346653 
LOC100289402          0.038   PREDICTED: hypothetical protein XP_002342490 
AHDC1                 0.034   AT hook, DNA binding motif, containing 1 
TRNP1                 0.030   TMF regulated nuclear protein 
LOC100131988          0.027   PREDICTED: hypothetical protein 
LOC100131988          0.027   PREDICTED: hypothetical protein 
LOC100290372          0.027   PREDICTED: hypothetical protein XP_002346788 
LOC100131988          0.027   PREDICTED: hypothetical protein 
LOC100288606          0.027   PREDICTED: hypothetical protein XP_002342652 
FBL                   0.027   fibrillarin 
SORCS3                0.027   VPS10 domain receptor protein SORCS 3 
C1orf77               0.023   small protein rich in arginine and glycine 
LOC100293935          0.023   PREDICTED: hypothetical protein 
LOC100287289          0.023   PREDICTED: hypothetical protein 
LOC100287289          0.023   PREDICTED: hypothetical protein XP_002343656 
BAT2                  0.023   HLA-B associated transcript-2 
GRASP                 0.023   GRP1 (general receptor for phosphoinositides 1)-asso...
LBXCOR1               0.023   LBXCOR1 homolog 
COL4A2                0.023   alpha 2 type IV collagen preproprotein 
HOXA13                0.019   homeobox A13 
LOC100290946          0.019   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.019   PREDICTED: hypothetical protein XP_002344246 
EVX2                  0.019   even-skipped homeobox 2 
MBD2                  0.019   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.019   methyl-CpG binding domain protein 2 isoform 1 
CACNG8                0.019   voltage-dependent calcium channel gamma-8 subunit [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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