Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169167740
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169167740 PREDICTED: hypothetical protein [Homo sapiens] 642 0.0
gi|113416994 PREDICTED: hypothetical protein [Homo sapiens] 639 0.0
gi|113416470 PREDICTED: hypothetical protein [Homo sapiens] 637 0.0
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 54 2e-07
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 52 5e-07
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 52 5e-07
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 52 6e-07
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 52 8e-07
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 52 8e-07
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 51 1e-06
gi|33286446 opioid growth factor receptor [Homo sapiens] 50 2e-06
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 50 2e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 50 3e-06
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 49 7e-06
gi|150170670 piccolo isoform 2 [Homo sapiens] 48 9e-06
gi|150378539 piccolo isoform 1 [Homo sapiens] 48 9e-06
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 47 2e-05
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 47 2e-05
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 47 2e-05
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 47 2e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 47 3e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens] 47 3e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 46 5e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 46 5e-05
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 46 5e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 46 5e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 46 5e-05
>gi|169167740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 642 bits (1656), Expect = 0.0
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT
Sbjct: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
Query: 61 HPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
HPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG
Sbjct: 61 HPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERS 180
RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERS
Sbjct: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERS 180
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI
Sbjct: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
Query: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG
Sbjct: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
Query: 301 VD 302
VD
Sbjct: 301 VD 302
>gi|113416994 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 639 bits (1647), Expect = 0.0
Identities = 300/302 (99%), Positives = 301/302 (99%)
Query: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT
Sbjct: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
Query: 61 HPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
HPEGFPDQPLIPATEPQSSTTFPGLS EAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG
Sbjct: 61 HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERS 180
RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPR+ARSQHPERS
Sbjct: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI
Sbjct: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
Query: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG
Sbjct: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
Query: 301 VD 302
VD
Sbjct: 301 VD 302
>gi|113416470 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 637 bits (1643), Expect = 0.0
Identities = 299/302 (99%), Positives = 300/302 (99%)
Query: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT
Sbjct: 1 MRTAPGKQEDIQHVVAVKMSNSPKALLEGDIVIMTKFCGNMVLKTLLKLTMCVTFQEPHT 60
Query: 61 HPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
HPEGFPDQPLIPATEPQSSTTFPGLS EAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG
Sbjct: 61 HPEGFPDQPLIPATEPQSSTTFPGLSAEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERS 180
RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPR+ARSQHPERS
Sbjct: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRRARSQHPERS 180
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI
Sbjct: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
Query: 241 PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
PHTRPRPKCACS PGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG
Sbjct: 241 PHTRPRPKCACSTPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRSWVFHRGVG 300
Query: 301 VD 302
VD
Sbjct: 301 VD 302
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 53.5 bits (127), Expect = 2e-07
Identities = 66/229 (28%), Positives = 90/229 (39%), Gaps = 44/229 (19%)
Query: 87 TEAPAPAGP---GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA 143
+ +P+P+G G+ +R G SGQ + RP P P P PR+R A A
Sbjct: 297 SRSPSPSGGSGWGSPQRNG---GSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAA 353
Query: 144 ----SRAKE---PRGLPAQ-----RPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHAR 191
+R KE PR P+ R G G R R R+ RS+ +P GR R
Sbjct: 354 PTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGR----R 409
Query: 192 KPAALPVPGRFPIRPVL---------GGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPH 242
+P P P R R + GR PG + G G G+ RPP
Sbjct: 410 RPR--PAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPP---- 463
Query: 243 TRPRPKCACSAPGTN-RNLGPRVAGAN-----HSASGVWAVSPRVTRAR 285
R RP +PG + R GP ++ H S + SP +R+R
Sbjct: 464 -RARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSR 511
Score = 43.5 bits (101), Expect = 2e-04
Identities = 52/199 (26%), Positives = 71/199 (35%), Gaps = 22/199 (11%)
Query: 66 PDQPLIPATEPQ-----SSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
PD+P P+ + ++ T P E+P+P +++ G A G R R
Sbjct: 335 PDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRR 394
Query: 121 R------APPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARS 174
R AP R R PRP + SRA+ + R GP GP +
Sbjct: 395 RSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGP-----GPEPGSER 449
Query: 175 QHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRS-----GPGDRSLRSAHLGGAGQ 229
H + R AR + P PG R G+S GP RS S+ +
Sbjct: 450 GHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSR 509
Query: 230 GRPWTARPPPIPHTRPRPK 248
R RP P P PK
Sbjct: 510 SRSAEKRPHS-PSRSPSPK 527
Score = 38.1 bits (87), Expect = 0.010
Identities = 58/227 (25%), Positives = 79/227 (34%), Gaps = 30/227 (13%)
Query: 79 STTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPR-FPRPRMRF 137
S++ G AP P GP GH G R RPP P +P R
Sbjct: 428 SSSDSGSGRGAPGP-GPEPGSERGH----GGHGKRAKERPPRARPASTSPSPGAHGRRGG 482
Query: 138 PQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEP----------EGRG 187
P+ +SR+ P P + ++SR + R P RSP P EGR
Sbjct: 483 PEGKSSSRSPGPH--PRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRA 540
Query: 188 NHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRP 247
H+ A R RS R R R +AR PIP+ RP P
Sbjct: 541 RHSEAEAT---------RARRRSRSYSPIRKRRRDSPSFMEPRRITSARKRPIPYYRPSP 591
Query: 248 --KCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATRS 292
+C + + R HS G ++ TR+R +R+
Sbjct: 592 SSSSSCLSSDYSTRSHSRSPSPGHS-HGSYSSRSHGTRSRTRSPSRT 637
Score = 34.3 bits (77), Expect = 0.14
Identities = 51/190 (26%), Positives = 66/190 (34%), Gaps = 13/190 (6%)
Query: 113 RNDHRPPG-RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQ 171
R D G R RH R + + + K E G + R + G
Sbjct: 210 RRDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHY 269
Query: 172 ARSQHPER-SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
+ S+ P R SP+ G RK + G P G G R+ S GA G
Sbjct: 270 SDSRSPSRLSPKHRDEG---RKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGG 326
Query: 231 RPWTARPPP----IPHTRPRPKCACSAPGT----NRNLGPRVAGANHSASGVWAVSPRVT 282
RP +A PP P R R K A +AP + PR A ++ G A
Sbjct: 327 RPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRR 386
Query: 283 RARRGCATRS 292
R RR RS
Sbjct: 387 RRRRRRRRRS 396
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 52.4 bits (124), Expect = 5e-07
Identities = 62/240 (25%), Positives = 82/240 (34%), Gaps = 37/240 (15%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPA-----PAGPGTTRRAGHMPASGQV 110
+ P P+G P Q +PQ PG P P GP + P G
Sbjct: 112 RSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDN 168
Query: 111 EARNDHRPPGRA---PPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
++R+ PPG+ PP+ + P+ P P PQ +P+G P GP +
Sbjct: 169 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 228
Query: 166 RGPPRQARSQHPE-RSPEPEGRGNH------------------ARKPAALPVPGRFPIRP 206
+ ARS + + P P+G GN KP P PG+ P
Sbjct: 229 DNKSQSARSPPGKPQGPPPQG-GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 287
Query: 207 VLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGPRVAG 266
GG RS G QG PPP P P G N+ GP G
Sbjct: 288 PQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP----PPQGGNKPQGPPPPG 343
Score = 49.7 bits (117), Expect = 3e-06
Identities = 57/206 (27%), Positives = 72/206 (34%), Gaps = 21/206 (10%)
Query: 61 HPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
+P+G P Q +PQ + PG + P P G + P Q P
Sbjct: 35 NPQGAPPQG---GNKPQGPPSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 90
Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERS 180
PP P+ P P Q K+ + P G P P G G + +GPP +
Sbjct: 91 GPPPPGKPQGPPP-----QGDKSRSPRSPPGKPQGPPPQG-GNQPQGPPPPPGK---PQG 141
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
P P+G GN KP P PG+ P G RS G QG PPP
Sbjct: 142 PPPQG-GN---KPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPP 197
Query: 241 PHTRPRPKCACSAPGTNRNLGPRVAG 266
P P G N+ GP G
Sbjct: 198 PGKPQGP----PPQGGNKPQGPPPPG 219
Score = 47.8 bits (112), Expect = 1e-05
Identities = 46/171 (26%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPA-----PAGPGTTRRAGHMPASGQV 110
+ P P+G P Q +PQ PG P P GP + P G
Sbjct: 236 RSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS 292
Query: 111 EARNDHRPPGRA---PPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
++R+ PPG+ PP+ + P+ P P PQ +P+G P GP +
Sbjct: 293 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 352
Query: 166 RGPPRQARSQHPERSPEPEGRGNHARKPAALPVPG--RFPIRPVLGGRSGP 214
R ARS + P+ GN+ + P P G + P P G GP
Sbjct: 353 GSKSRSARSPPGKPQGPPQQEGNNPQGPPP-PAGGNPQQPQAPPAGQPQGP 402
Score = 43.9 bits (102), Expect = 2e-04
Identities = 53/202 (26%), Positives = 68/202 (33%), Gaps = 17/202 (8%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P G P P S P + P P G + P Q P
Sbjct: 217 PPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 276
Query: 122 APPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSP 181
PP P+ P P+ K+ ++ P G P P G G + +GPP + P
Sbjct: 277 PPPPGKPQGPPPQ----GGSKSRSSRSPPGKPQGPPPQG-GNQPQGPPPPPGK---PQGP 328
Query: 182 EPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQ-GRPWTARPPPI 240
P+G GN KP P PG+ P GG RS G Q G PPP
Sbjct: 329 PPQG-GN---KPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPA 384
Query: 241 PHTRPRPKCACSAPGTNRNLGP 262
+P+ AP + GP
Sbjct: 385 GGNPQQPQ----APPAGQPQGP 402
Score = 40.4 bits (93), Expect = 0.002
Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPA-----PAGPGTTRRAGHMPASGQV 110
+ P P+G P Q +PQ PG P P GP + P G
Sbjct: 298 RSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS 354
Query: 111 EARNDHRPPGR--APPRHA---PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
++R+ PPG+ PP+ P+ P P P G Q+P P +
Sbjct: 355 KSRSARSPPGKPQGPPQQEGNNPQGPPP---------------PAGGNPQQPQAPPAGQP 399
Query: 166 RGPPRQARSQHPERSPE 182
+GPPR + P R P+
Sbjct: 400 QGPPRPPQGGRPSRPPQ 416
Score = 38.9 bits (89), Expect = 0.006
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 17/151 (11%)
Query: 58 PHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHR 117
P P+G P Q ++ +SS + PG + P P G + P Q
Sbjct: 279 PPGKPQGPPPQG---GSKSRSSRSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 334
Query: 118 PPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQA--RSQ 175
P PP P+ P P+ K+ A+ P G P Q P G +GPP A Q
Sbjct: 335 KPQGPPPPGKPQGPPPQ----GGSKSRSARSPPGKP-QGPPQQEGNNPQGPPPPAGGNPQ 389
Query: 176 HPERSPEPEGRGNHARKPAALPVPGRFPIRP 206
P+ P + +G P P GR P RP
Sbjct: 390 QPQAPPAGQPQG-----PPRPPQGGR-PSRP 414
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 52.4 bits (124), Expect = 5e-07
Identities = 60/200 (30%), Positives = 78/200 (39%), Gaps = 28/200 (14%)
Query: 88 EAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRF-------PQA 140
+ PAP G GH P E R H P G H P+ R PQ
Sbjct: 794 QGPAPQG----MIMGHPPQ----EMRGPHPPGGLLG--HGPQEMRGPQEIRGMQGPPPQG 843
Query: 141 WKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHAR--KPAALPV 198
+E RG P + GP S GPP Q Q P P P+G+ N AR P+ P+
Sbjct: 844 SMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGP---PGPQGQQNPARGPHPSQGPI 900
Query: 199 PGRFPIRPVLG-GRSGPGDRSLRSAH----LGGAGQGRPWTARPPPIPHTRPRPKCACSA 253
P + P+LG G P ++ +S + G GQ PP P P P S
Sbjct: 901 PFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSR 960
Query: 254 PGTNRNLGPRVAGANHSASG 273
N ++GP ++ H SG
Sbjct: 961 GPPNHHMGP-MSERRHEQSG 979
Score = 32.3 bits (72), Expect = 0.53
Identities = 46/152 (30%), Positives = 54/152 (35%), Gaps = 44/152 (28%)
Query: 117 RPPGRAPPRHAPRFP-----RPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQ 171
R GRAPPR FP P F + +A+R ++ RG R RG PR
Sbjct: 1111 RHEGRAPPRGRDGFPGPEDFGPEENFDASEEAARGRDLRG------------RGRGTPRG 1158
Query: 172 ARS---QHPERSPEPEGRGNHARKPAAL-----PVPGR-------FPIRPVLGGRSGPGD 216
R P+ P EG RKP + P PG P P G S P
Sbjct: 1159 GRKGLLPTPDEFPRFEG----GRKPDSWDGNREPGPGHEHFRDTPRPDHPPHDGHS-PAS 1213
Query: 217 RSLRSAHLGGAGQG------RPWTARPPPIPH 242
R RS+ L G RPW P H
Sbjct: 1214 RE-RSSSLQGMDMASLPPRKRPWHDGPGTSEH 1244
Score = 30.4 bits (67), Expect = 2.0
Identities = 38/137 (27%), Positives = 45/137 (32%), Gaps = 24/137 (17%)
Query: 90 PAPAGPGTTRRAGHMPASGQVEARNDHRP----PGRAPPRHAPRFPRPRMRFPQAWKASR 145
P P G R H P+ G + + P RAP + P P +
Sbjct: 881 PGPQGQQNPARGPH-PSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGA 939
Query: 146 AKEPRGLPAQRPTWGPGTR---SRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRF 202
+P P GPG SRGPP ER E G H P R
Sbjct: 940 QGR---IPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHG--------PERG 988
Query: 203 PIRPVLGGRS--GPGDR 217
P R GG+ GP DR
Sbjct: 989 PFR---GGQDCRGPPDR 1002
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 52.0 bits (123), Expect = 6e-07
Identities = 54/158 (34%), Positives = 67/158 (42%), Gaps = 16/158 (10%)
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFP-RPRMRFPQAWKASRAKEPR-GLPAQRPTWGPGTR 164
SG+ E R RP G P+ P P +P R PQ S+ PR G P P G G +
Sbjct: 33 SGKPEGR---RPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQG-GNQ 88
Query: 165 SRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
S+GPP R PE P P+G GN ++ P P PG+ P GG G
Sbjct: 89 SQGPP--PRPGKPEGQP-PQG-GNQSQGPP--PRPGKPEGPPPQGGNQSQGPPPRPGKPE 142
Query: 225 GGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
G QG + PPP P P G N++ GP
Sbjct: 143 GPPPQGGNQSQGPPPRPGKPEGP----PPQGGNQSQGP 176
Score = 48.5 bits (114), Expect = 7e-06
Identities = 61/204 (29%), Positives = 73/204 (35%), Gaps = 33/204 (16%)
Query: 58 PHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAG--------PGTTRRAGHMPASGQ 109
P PEG P Q + Q PG E P P G P + G P G
Sbjct: 53 PPGKPEGRPPQG---GNQSQGPPPRPG-KPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGN 108
Query: 110 VEARNDHRP--PGRAPPRHA-------PRFPRPRMRFPQAWKASRAKEPR-GLPAQRPTW 159
RP P PP+ PR +P PQ S+ PR G P P
Sbjct: 109 QSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQ 168
Query: 160 GPGTRSRGPPRQARSQHPER--SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDR 217
G G +S+GPP HP + P P+G GN ++ P P PG+ P GG G
Sbjct: 169 G-GNQSQGPP-----PHPGKPEGPPPQG-GNQSQGPP--PRPGKPEGPPPQGGNQSQGPP 219
Query: 218 SLRSAHLGGAGQGRPWTARPPPIP 241
G QG PPP P
Sbjct: 220 PRPGKPEGPPSQGGNKPQGPPPHP 243
Score = 33.1 bits (74), Expect = 0.31
Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 22/126 (17%)
Query: 63 EGFPDQPLIP-ATEPQSSTTFPGLSTEAPAPAGP---GTTRRAGHMPASGQVEAR--NDH 116
+G P +P P PQ G P GP G + G P G+ + +
Sbjct: 195 QGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEG 254
Query: 117 RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQH 176
P R PP P+ P P P G P Q+P P + +GPP +
Sbjct: 255 NKPQRPPPPGRPQGPPP---------------PGGNP-QQPLPPPAGKPQGPPPPPQGGR 298
Query: 177 PERSPE 182
P R P+
Sbjct: 299 PHRPPQ 304
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 51.6 bits (122), Expect = 8e-07
Identities = 57/203 (28%), Positives = 74/203 (36%), Gaps = 29/203 (14%)
Query: 58 PHTHPEGFPDQ-------PLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQV 110
P P+G P Q P P +P+ G ++ P P PG R P G
Sbjct: 53 PPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPH-PGKPERP---PPQGGN 108
Query: 111 EARNDHRPPG---RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
+++ PPG R PP+ + RP P K R G +Q P PG
Sbjct: 109 QSQGTPPPPGKPERPPPQGGNQSHRPP---PPPGKPERPPPQGGNQSQGPPPHPGKPEGP 165
Query: 168 PPRQARSQHPERSPEPEGRG---NHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
PP++ RSP + +G KP P PG+ P G G+ A
Sbjct: 166 PPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAG-----GNPQQPQAPP 220
Query: 225 GGAGQGRPWTARPPPIPHTRPRP 247
G QG P PPP PRP
Sbjct: 221 AGKPQGPP----PPPQGGRPPRP 239
Score = 42.0 bits (97), Expect = 7e-04
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 62 PEGFPDQPLIPA-TEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPG 120
P G P++P + Q PG E P P +R A P Q + + P
Sbjct: 137 PPGKPERPPPQGGNQSQGPPPHPG-KPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQ 195
Query: 121 RAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHP 177
PP P+ P P PQ +A A +P+G P P + PPR A+ Q P
Sbjct: 196 GPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPP-------PPPQGGRPPRPAQGQQP 245
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/132 (32%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 132 RPRMRFPQAW-KASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHA 190
+P R PQ + R P G P P G G +S+GPP PE P P+G GN +
Sbjct: 35 KPEGRRPQGGNQPQRPPPPPGKPQGPPPQG-GNQSQGPPPPPGK--PEGRP-PQG-GNQS 89
Query: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCA 250
+ P P PG+ P GG G QG + RPPP P RP
Sbjct: 90 QGPP--PHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERP--- 144
Query: 251 CSAPGTNRNLGP 262
G N++ GP
Sbjct: 145 -PPQGGNQSQGP 155
Score = 30.8 bits (68), Expect = 1.5
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 180 SPEPEGR----GNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTA 235
S +PEGR GN ++P P PG+ P GG G G QG +
Sbjct: 33 SGKPEGRRPQGGNQPQRPP--PPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQ 90
Query: 236 RPPPIPH--TRPRPKCACSAPGT 256
PPP P RP P+ + GT
Sbjct: 91 GPPPHPGKPERPPPQGGNQSQGT 113
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 51.6 bits (122), Expect = 8e-07
Identities = 62/222 (27%), Positives = 82/222 (36%), Gaps = 24/222 (10%)
Query: 66 PDQPLIPATEPQSSTTFP-GLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPP 124
P + P+ + T P G +P+P P T RR PA R PP R P
Sbjct: 525 PSRSASPSPRKRQKETSPRGRRRRSPSP--PPTRRRRSPSPAPPPRRRRTPTPPPRRRTP 582
Query: 125 RHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPE 184
P PR R P + S + R P+ P T S PP + R+ SP P+
Sbjct: 583 S-----PPPRRRSPSPRRYSPPIQRRYSPSPPPK--RRTASPPPPPKRRASP---SPPPK 632
Query: 185 GRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTR 244
R +H+ P P + R P SL S H G+ R P P+ R
Sbjct: 633 RRVSHSPPPKQRSSP--------VTKRRSP---SLSSKHRKGSSPSRSTREARSPQPNKR 681
Query: 245 PRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARR 286
P AP T+ + P GA+ S + SP RR
Sbjct: 682 HSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRR 723
Score = 39.7 bits (91), Expect = 0.003
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 20/190 (10%)
Query: 72 PATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFP 131
P+ P+ T P + A P RR H P Q + R +H
Sbjct: 606 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKH----- 660
Query: 132 RPRMRFPQAWKASRAKEP--RGLPAQRPTWGPGTRSRGPP-RQARSQHPERSPEPEGRGN 188
R ++ + +R+ +P R P+ RP P T S PP R+ S P+R P
Sbjct: 661 RKGSSPSRSTREARSPQPNKRHSPSPRPR-APQTSSSPPPVRRGASSSPQRRQSPSPSTR 719
Query: 189 HARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW-TARPPPIPHTRPRP 247
R+ + P P + + + P +S+R + G P A+ PP P P P
Sbjct: 720 PIRRVSRTPEPKK------IKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAP---PSP 770
Query: 248 KCACSAPGTN 257
+P TN
Sbjct: 771 -VQSQSPSTN 779
Score = 36.6 bits (83), Expect = 0.028
Identities = 38/139 (27%), Positives = 47/139 (33%), Gaps = 13/139 (9%)
Query: 118 PPGRAPPRHAP--------RFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPP 169
P R PPR P R P R R A + + ++ P P R+ PP
Sbjct: 323 PRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPP 382
Query: 170 RQARSQHPERSPEPEGRGNHARKPAALPVP-GRFPIRPVLGGRSGPGDRSLRSAHLGGAG 228
R+ R P SP R H P A P P R P R+ S+ G
Sbjct: 383 RKTRRLSPSASPP---RRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKV 439
Query: 229 QGRPWT-ARPPPIPHTRPR 246
T R P P +PR
Sbjct: 440 TKHKGTEKRESPSPAPKPR 458
Score = 33.9 bits (76), Expect = 0.18
Identities = 44/153 (28%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 124 PRHAPRFPRPRMRFPQ--AWKASRAKEPRGLPAQRPTWGPGTRSRGP----PRQ-----A 172
P+ P P P+ P+ + K ++ R R TRSR P PR+ +
Sbjct: 248 PKPEP-IPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRS 306
Query: 173 RSQHPERSPEPEGRGNHARK--PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
RS P R P P R + R+ P +P P R RS R SA L G+
Sbjct: 307 RSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRH-----RRSRSPVRRRRRSSASLSGSSSS 361
Query: 231 RPWT-ARPPPIPHTRPRPKCACSAPGTNRNLGP 262
+ +R PP + PK S P R L P
Sbjct: 362 SSSSRSRSPP----KKPPKRTSSPPRKTRRLSP 390
Score = 32.3 bits (72), Expect = 0.53
Identities = 43/183 (23%), Positives = 61/183 (33%), Gaps = 37/183 (20%)
Query: 111 EARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPR 170
E+ + R R+P R R P PR R P +R + SR P
Sbjct: 160 ESSREKRERSRSPRRRKSRSPSPRRR--------------SSPVRRER--KRSHSRSPRH 203
Query: 171 QARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
+ +S+ P +PE + K LP P P + + D
Sbjct: 204 RTKSRSPSPAPEKK------EKTPELPEPSVKVKEPSVQEATSTSDILK----------- 246
Query: 231 RPWTARPPPIPHTR-PRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRARRGCA 289
+P PIP + P P+ PR + S S + SP TR RR
Sbjct: 247 ---VPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHR 303
Query: 290 TRS 292
+RS
Sbjct: 304 SRS 306
Score = 28.9 bits (63), Expect = 5.8
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 99 RRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPT 158
R + + S + + R P + PP+ PR R + R + PA P
Sbjct: 350 RSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPP- 408
Query: 159 WGPGTRSRGPPRQARSQHPERSPEPEGR 186
P TR P+Q+ R GR
Sbjct: 409 --PKTRHSPTPQQSNRTRKSRVSVSPGR 434
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 50.8 bits (120), Expect = 1e-06
Identities = 57/208 (27%), Positives = 69/208 (33%), Gaps = 18/208 (8%)
Query: 54 TFQEPHTHPEGFPDQPLIPATEPQSSTTFPG-----LSTEAPAPAGPGTTRRAGHMPASG 108
T +EP P P P P + S FP S +P PAGP + PA+
Sbjct: 759 TAEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAAS 818
Query: 109 QVEARN-DHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
A +PPG P AP P P P KEP G GP G
Sbjct: 819 SSSATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGC---SKGGGPPREDVG 875
Query: 168 PPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG-- 225
P S G A PA P + P+R L GR+ P H
Sbjct: 876 APLVTPSLLQMVRLRSVGAPGGAPTPALGPSAPQKPLRRALSGRASPVPAPSSGLHAAVR 935
Query: 226 ------GAGQGRPWTARPPPIPHTRPRP 247
A +G +A+P P PRP
Sbjct: 936 LKACSLAASEGLS-SAQPNGPPEAEPRP 962
Score = 41.6 bits (96), Expect = 9e-04
Identities = 60/209 (28%), Positives = 74/209 (35%), Gaps = 38/209 (18%)
Query: 66 PDQPLIPA------TEPQS-STTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEAR----- 113
P P +PA ++P+S + P L+ A P TT + P + Q
Sbjct: 661 PPHPKVPAPFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQES 720
Query: 114 ----NDHRPPGRAPPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGP 168
D PP PP + P P P + P+ +A A E P Q P W P P
Sbjct: 721 PVISKDQSPPPSPPPSYHP--PPPPTKKPEVVVEAPSASETAEEPLQDPNWPP-----PP 773
Query: 169 PRQARSQHPERS--PEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGG 226
P Q + P PE A A P P P L S P S + L
Sbjct: 774 PPAPEEQDLSMADFPPPE----EAFFSVASPEPAGPSGSPEL--VSSPAASSSSATALQI 827
Query: 227 AGQGRPWTARPPPIPHTRPRPKCACSAPG 255
G P PPP P P P A SAPG
Sbjct: 828 QPPGSP---DPPPAP---PAPAPASSAPG 850
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 50.1 bits (118), Expect = 2e-06
Identities = 51/188 (27%), Positives = 68/188 (36%), Gaps = 21/188 (11%)
Query: 61 HPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHR--P 118
H E ++ T P+ T T P+PAGP AG PA E P
Sbjct: 495 HSENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGP-----AGDEPAESPSETPGPRPAGP 549
Query: 119 PGRAPPRHAPRFPRPRMRFPQAWKA----------SRAKEPRGLPAQRPTWGPGTRSRGP 168
G P P PR P + S A R PA+ P+ PG R GP
Sbjct: 550 AGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGP 609
Query: 169 PRQARSQHPERSPEPEGRGNHARKPAALP--VPGRFPIRPVLGGRSGPGDRS-LRSAHL- 224
++ P +P P G +PA P PG P P + G+ + L+ A +
Sbjct: 610 AGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEAAELQDAEVE 669
Query: 225 GGAGQGRP 232
A G+P
Sbjct: 670 SSAKSGKP 677
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 50.1 bits (118), Expect = 2e-06
Identities = 71/253 (28%), Positives = 97/253 (38%), Gaps = 26/253 (10%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPA-GPGTTRRAGHMPAS-----GQ 109
+ P P+ + P+ +P + S E+P PA PG+ R P S G+
Sbjct: 407 KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGR 466
Query: 110 VEARNDH-----RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEP---RGLPAQRPTWGP 161
+ H R GR+ + R R R P SR++ P R AQR WG
Sbjct: 467 AKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQR--WG- 523
Query: 162 GTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIR-PVLGGRSGPGDRSLR 220
RSR P R+ RS+ P+R R R + GR R P GRS RS
Sbjct: 524 --RSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRS----RSRT 577
Query: 221 SAHLGGAGQGRPWTARPPPIPHTRPRPKCACSA-PGTNRNLGPRVAGANHSASGVWAVSP 279
A G + P R TR R + A G +R+ P + + S V S
Sbjct: 578 PARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTP-ARRRSRTRSPVRRRSR 636
Query: 280 RVTRARRGCATRS 292
+ ARR +RS
Sbjct: 637 SRSPARRSGRSRS 649
Score = 34.7 bits (78), Expect = 0.11
Identities = 50/174 (28%), Positives = 64/174 (36%), Gaps = 12/174 (6%)
Query: 91 APAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEP- 149
+P PG +R AR GR+ R R R R P SR++ P
Sbjct: 536 SPQRPGWSRSRNTQRRGRSRSARR-----GRSHSRSPATRGRSRSRTPARRGRSRSRTPA 590
Query: 150 RGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLG 209
R R +RSR P R+ RS RS P R + R P R P R
Sbjct: 591 RRRSRSRTPTRRRSRSRTPARRGRS----RSRTPARRRSRTRSPVRRRSRSRSPARRSGR 646
Query: 210 GRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGPR 263
RS R RS A +GR +R P R R + + G +R+ PR
Sbjct: 647 SRSRTPARRGRSRSRTPARRGRS-RSRTPARRSGRSRSRTP-ARRGRSRSRTPR 698
Score = 33.5 bits (75), Expect = 0.24
Identities = 32/141 (22%), Positives = 46/141 (32%), Gaps = 25/141 (17%)
Query: 72 PATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPP-----GRAPPRH 126
P P+ S + P+P G +T + P + R P R PPR
Sbjct: 1629 PRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRR 1688
Query: 127 -----APRFPRPRMRFPQAWKASRAKEPRGL---------------PAQRPTWGPGTRSR 166
+P R ++ AS + E R PA++ RS
Sbjct: 1689 RSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSA 1748
Query: 167 GPPRQARSQHPERSPEPEGRG 187
PR + RSP P+ RG
Sbjct: 1749 SSPRTKTTSRRGRSPSPKPRG 1769
Score = 30.4 bits (67), Expect = 2.0
Identities = 61/276 (22%), Positives = 90/276 (32%), Gaps = 57/276 (20%)
Query: 57 EPHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPAP-------AGPGTTRRAGHMPASGQ 109
E + E P+ P T + S + P T++ P + P TR+A S
Sbjct: 1650 EGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRS 1709
Query: 110 VEARNDHRPPGRAPPRH----APRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
+ + R R PPRH + P P + + + A PR R P +
Sbjct: 1710 ASSSPETR--SRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKP 1767
Query: 166 RGPPR----------------------QARSQHPERSPEPE--------GRGNHARKPAA 195
RG R Q+ S+ +RS G G H+R PA
Sbjct: 1768 RGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPAR 1827
Query: 196 LPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPG 255
R R G P RS +R P P R R + + +
Sbjct: 1828 -QESSRTSSRRRRGRSRTPPTSRKRS------------RSRTSPAPWKRSRSRASPATHR 1874
Query: 256 TNRNLGPRVAGANHSASGVWAVSPRVTRARRGCATR 291
+R+ P ++ S S VS R +R+R R
Sbjct: 1875 RSRSRTPLIS-RRRSRSRTSPVSRRRSRSRTSVTRR 1909
Score = 29.6 bits (65), Expect = 3.4
Identities = 44/203 (21%), Positives = 71/203 (34%), Gaps = 18/203 (8%)
Query: 78 SSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRP---PGRAPPRHAPRFPRPR 134
+S++ S A A TT AG P+ P PG + P P
Sbjct: 269 ASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQR-PSSPETA 327
Query: 135 MRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGP----PRQARSQHPERSPEPEGRGNHA 190
+ P + + K+ + A RP+ P S GP P ++ SP+P +
Sbjct: 328 TKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLS 387
Query: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPH---TRPRP 247
++P P P R RS P +S + + P + +P + + P
Sbjct: 388 QEPVNPPSEAS-PTR----DRSPP--KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPES 440
Query: 248 KCACSAPGTNRNLGPRVAGANHS 270
APG++R + N S
Sbjct: 441 PKPAPAPGSHREISSSPTSKNRS 463
Score = 29.6 bits (65), Expect = 3.4
Identities = 50/209 (23%), Positives = 72/209 (34%), Gaps = 22/209 (10%)
Query: 100 RAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFP-----QAWKASRAKEPRGLPA 154
RA SG + P RA PR + + R P + ++S P+ A
Sbjct: 1609 RAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTA 1668
Query: 155 QRPTWG---PGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALP-----VPGRFPIRP 206
+R + P T+SR PPR+ S+ +R ++ P P R P
Sbjct: 1669 RRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSP 1728
Query: 207 VLGGRSGPGDRSLRSAHLGGAGQGRPWTA-----RPPPIPHTRPRPKCACSAPGTNRNLG 261
+ P ++S S A R T P P P R + T
Sbjct: 1729 SVSSPE-PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRR 1787
Query: 262 PRVAGANHSASGVWAVS---PRVTRARRG 287
+G++ S S S RVTR RRG
Sbjct: 1788 RDRSGSSQSTSRRRQRSRSRSRVTRRRRG 1816
Score = 28.1 bits (61), Expect = 10.0
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 73 ATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPR 132
++ SS++ S+ +P+PA PG +A PAS + PPG R +PR P
Sbjct: 2632 SSSSSSSSSSSSSSSSSPSPAKPGP--QALPKPASPK------KPPPGERRSR-SPRKPI 2682
Query: 133 PRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHARK 192
+R ++ S + R P+ +P+ PR +S ER RG+ +R
Sbjct: 2683 DSLRDSRSLSYSPVERRR--PSPQPS----------PRDQQSSSSERGSRRGQRGD-SRS 2729
Query: 193 PA 194
P+
Sbjct: 2730 PS 2731
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 49.7 bits (117), Expect = 3e-06
Identities = 62/225 (27%), Positives = 80/225 (35%), Gaps = 39/225 (17%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P+G P P P P P P GP P G ++R+ PPG+
Sbjct: 108 PQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGP---------PPQGD-KSRSPRSPPGK 157
Query: 122 ---APPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGP---GTRSR------- 166
PP+ + P+ P P PQ K+P+G P GP G +SR
Sbjct: 158 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPG 217
Query: 167 ---GPPRQARSQHPERSPEPEGR-----GNHARKPAALPVPGRFPIRPVLGGRSGPGDRS 218
GPP Q +Q P+ P P G+ KP P PG+ P GG RS
Sbjct: 218 KPQGPPPQGGNQ-PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARS 276
Query: 219 LRSAHLGGAGQ-GRPWTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
G Q G PPP +P+ AP + GP
Sbjct: 277 PPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQ----APPAGQPQGP 317
Score = 49.3 bits (116), Expect = 4e-06
Identities = 61/223 (27%), Positives = 81/223 (36%), Gaps = 29/223 (13%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPAS--GQVEA---RNDH 116
P+G P P P P P P GP P S G+ + + +
Sbjct: 47 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGN 106
Query: 117 RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS-RGPPRQARSQ 175
+P G PP P+ P PQ + P G P P G +RS R PP + +
Sbjct: 107 QPQGPPPPPGKPQGPP-----PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGP 161
Query: 176 HPERSPEPEGRGNHARKPAALPVP-GRFPIRPVLGGR-SGP---GDRSLRSAHLGGAGQG 230
P+ +P+G KP P G+ P P G+ GP GD+S S G QG
Sbjct: 162 PPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQG 221
Query: 231 -------RPWTARPPPIPHTRPRPKCACSAPGTNRNLGPRVAG 266
+P PPP P P+ G N+ GP G
Sbjct: 222 PPPQGGNQPQGPPPPPGKPQGPPPQ------GGNKPQGPPPPG 258
Score = 42.4 bits (98), Expect = 5e-04
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 28/137 (20%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPA-----PAGPGTTRRAGHMPASGQV 110
Q P P+G P Q +PQ PG P P GP + PA G
Sbjct: 213 QSPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGS 269
Query: 111 EARNDHRPPGR--APPRHA---PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
++++ PPG+ PP+ P+ P P P G Q+P P +
Sbjct: 270 KSQSARSPPGKPQGPPQQEGNNPQGPPP---------------PAGGNPQQPQAPPAGQP 314
Query: 166 RGPPRQARSQHPERSPE 182
+GPPR + P R P+
Sbjct: 315 QGPPRPPQGGRPSRPPQ 331
Score = 41.2 bits (95), Expect = 0.001
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 20/139 (14%)
Query: 116 HRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS--------RG 167
++P G PP P+ P P Q + P G P P G +RS +G
Sbjct: 45 NKPQGPPPPPGKPQGPPP-----QGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQG 99
Query: 168 PPRQARSQHPERSPEPEGR-----GNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSA 222
PP Q +Q P+ P P G+ +P P PG+ P P G RS
Sbjct: 100 PPPQGGNQ-PQGPPPPPGKPQGPPPQGGNRPQGPPPPGK-PQGPPPQGDKSRSPRSPPGK 157
Query: 223 HLGGAGQGRPWTARPPPIP 241
G QG PPP P
Sbjct: 158 PQGPPPQGGNQPQGPPPPP 176
Score = 37.7 bits (86), Expect = 0.013
Identities = 41/147 (27%), Positives = 54/147 (36%), Gaps = 14/147 (9%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P G P P + +SS + PG + P P G + P Q P
Sbjct: 195 PPGKPQGPPPQGDKSRSSQSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 253
Query: 122 APPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQA--RSQHPER 179
PP P+ P + K+ A+ P G P Q P G +GPP A Q P+
Sbjct: 254 PPPPGKPQGPPAQ----GGSKSQSARSPPGKP-QGPPQQEGNNPQGPPPPAGGNPQQPQA 308
Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRP 206
P + +G P P GR P RP
Sbjct: 309 PPAGQPQG-----PPRPPQGGR-PSRP 329
Score = 30.4 bits (67), Expect = 2.0
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 17/126 (13%)
Query: 149 PRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVL 208
P G P P G G + +GPP + Q P P+ G+ +R P + P + P P
Sbjct: 53 PPGKPQGPPPQG-GNKPQGPPPPGKPQ----GPPPQ--GDKSRSPRSPPGKPQGP--PPQ 103
Query: 209 GGRS------GPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
GG PG G QG P +P P + + S PG + GP
Sbjct: 104 GGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPG--KPQGP 161
Query: 263 RVAGAN 268
G N
Sbjct: 162 PPQGGN 167
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 48.5 bits (114), Expect = 7e-06
Identities = 59/192 (30%), Positives = 65/192 (33%), Gaps = 31/192 (16%)
Query: 82 FPGL---STEAPAPAGPGTTRR---AGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRM 135
FPG P PAGPG AG P + PPG PP P P
Sbjct: 207 FPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQV--LPPPLA 264
Query: 136 RFPQAWKASRAKEP---RGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHARK 192
P + R P G P +P GP GPP P P P +G
Sbjct: 265 GPPN--RGDRPPPPVLFPGQPFGQPPLGP--LPPGPPPPVPGYGPPPGPPPPQQG----- 315
Query: 193 PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPR--PKCA 250
P PG FP RP G GP HL G P PPP PH P P
Sbjct: 316 --PPPPPGPFPPRP--PGPLGPPLTLAPPPHLPG-----PPPGAPPPAPHVNPAFFPPPT 366
Query: 251 CSAPGTNRNLGP 262
S T+ + GP
Sbjct: 367 NSGMPTSDSRGP 378
Score = 38.1 bits (87), Expect = 0.010
Identities = 44/147 (29%), Positives = 53/147 (36%), Gaps = 22/147 (14%)
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWK-ASRAKEPRGLPAQRPTWGPGTRS 165
SGQ+ PPG + P+ R R RFP A R P G P + G
Sbjct: 177 SGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAG--- 233
Query: 166 RGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG 225
+ PPR P P P G P P PG+ + P L G GDR
Sbjct: 234 QTPPRP-----PLGPPGPPG-------PPGPPPPGQV-LPPPLAGPPNRGDRPPPPVLFP 280
Query: 226 GAGQGRP-----WTARPPPIPHTRPRP 247
G G+P PPP+P P P
Sbjct: 281 GQPFGQPPLGPLPPGPPPPVPGYGPPP 307
Score = 29.3 bits (64), Expect = 4.5
Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 21/105 (20%)
Query: 162 GTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRS 221
G GPP + R+ P+G R P A+P RFP G +GPG
Sbjct: 182 GEGKAGPPGGS-----SRAAFPQGGRGRGRFPGAVPGGDRFP------GPAGPG------ 224
Query: 222 AHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGPRVAG 266
G P PP P P P P + L P +AG
Sbjct: 225 ----GPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAG 265
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 48.1 bits (113), Expect = 9e-06
Identities = 57/222 (25%), Positives = 80/222 (36%), Gaps = 37/222 (16%)
Query: 57 EPHTHPEGF---PDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEAR 113
+P P G P QPL PA P T S+E P P G PA
Sbjct: 350 KPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQ------ 403
Query: 114 NDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPG---TRSRGPPR 170
+P PP P+P + P ++A P P Q+P GPG + GP +
Sbjct: 404 ---QPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQP--GPGKIPAQQAGPGK 458
Query: 171 QARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
+ Q P P A+ P P P + P P G + P +
Sbjct: 459 TSAQQTGPTKP-PSQLPGPAKPPPQQPGPAKPP--PQQPGSAKPPSQ------------- 502
Query: 231 RPWTARPPPIPHTRPRP-KCACSAPGTNRNLGPRVAGANHSA 271
+P + +PPP +P P K + PG+ + + A SA
Sbjct: 503 QPGSTKPPP---QQPGPAKPSPQQPGSTKPPSQQPGSAKPSA 541
Score = 33.9 bits (76), Expect = 0.18
Identities = 37/156 (23%), Positives = 60/156 (38%), Gaps = 19/156 (12%)
Query: 108 GQVEARNDHRPPGRAPPRHAP-RFPRPRMRFPQAWKASRAKEPR------GLPAQRPTWG 160
G ++ +PP P + P R P + P++ + + ++ + G P Q PT
Sbjct: 205 GIIKPPLQQQPPKPIPKQQGPGRDPLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPTQT 264
Query: 161 PGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLR 220
P T P Q + P+ RG + +LP P + PI+ G+
Sbjct: 265 PQTDHAKLPLQRDASRPQTKQADIVRGESVK--PSLPSPSKPPIQQPTPGKP-------- 314
Query: 221 SAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGT 256
A G + +P A+PP P +P PGT
Sbjct: 315 PAQQPGHEKSQPGPAKPPAQPSGLTKP--LAQQPGT 348
Score = 31.2 bits (69), Expect = 1.2
Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 26/154 (16%)
Query: 57 EPHTHPEGFPDQPLIPATEPQSSTTFPGLS---TEAPAP-------AGPGTTRRAGHMPA 106
+P T G P +PL QS PG + + P P AGPG T
Sbjct: 409 KPPTQQVGTP-KPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKT-------- 459
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLP--AQRPTWGPGTR 164
+ +PP + P P +P P + AK P P + P PG
Sbjct: 460 --SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPA 517
Query: 165 SRGPPRQARSQHPERSP---EPEGRGNHARKPAA 195
P + ++ P + P +P + KP+A
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSA 551
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 48.1 bits (113), Expect = 9e-06
Identities = 57/222 (25%), Positives = 80/222 (36%), Gaps = 37/222 (16%)
Query: 57 EPHTHPEGF---PDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEAR 113
+P P G P QPL PA P T S+E P P G PA
Sbjct: 350 KPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQ------ 403
Query: 114 NDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPG---TRSRGPPR 170
+P PP P+P + P ++A P P Q+P GPG + GP +
Sbjct: 404 ---QPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQP--GPGKIPAQQAGPGK 458
Query: 171 QARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
+ Q P P A+ P P P + P P G + P +
Sbjct: 459 TSAQQTGPTKP-PSQLPGPAKPPPQQPGPAKPP--PQQPGSAKPPSQ------------- 502
Query: 231 RPWTARPPPIPHTRPRP-KCACSAPGTNRNLGPRVAGANHSA 271
+P + +PPP +P P K + PG+ + + A SA
Sbjct: 503 QPGSTKPPP---QQPGPAKPSPQQPGSTKPPSQQPGSAKPSA 541
Score = 33.9 bits (76), Expect = 0.18
Identities = 37/156 (23%), Positives = 60/156 (38%), Gaps = 19/156 (12%)
Query: 108 GQVEARNDHRPPGRAPPRHAP-RFPRPRMRFPQAWKASRAKEPR------GLPAQRPTWG 160
G ++ +PP P + P R P + P++ + + ++ + G P Q PT
Sbjct: 205 GIIKPPLQQQPPKPIPKQQGPGRDPLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPTQT 264
Query: 161 PGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLR 220
P T P Q + P+ RG + +LP P + PI+ G+
Sbjct: 265 PQTDHAKLPLQRDASRPQTKQADIVRGESVK--PSLPSPSKPPIQQPTPGKP-------- 314
Query: 221 SAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGT 256
A G + +P A+PP P +P PGT
Sbjct: 315 PAQQPGHEKSQPGPAKPPAQPSGLTKP--LAQQPGT 348
Score = 31.2 bits (69), Expect = 1.2
Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 26/154 (16%)
Query: 57 EPHTHPEGFPDQPLIPATEPQSSTTFPGLS---TEAPAP-------AGPGTTRRAGHMPA 106
+P T G P +PL QS PG + + P P AGPG T
Sbjct: 409 KPPTQQVGTP-KPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKT-------- 459
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLP--AQRPTWGPGTR 164
+ +PP + P P +P P + AK P P + P PG
Sbjct: 460 --SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPA 517
Query: 165 SRGPPRQARSQHPERSP---EPEGRGNHARKPAA 195
P + ++ P + P +P + KP+A
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSA 551
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 47.4 bits (111), Expect = 2e-05
Identities = 65/207 (31%), Positives = 75/207 (36%), Gaps = 30/207 (14%)
Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFP-------QAW----KASRAKEPRGLPAQR 156
G AR H PP AP A P P AW +ASRA R PA
Sbjct: 44 GPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGP 103
Query: 157 PTWGPG----TRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRS 212
P PG +R P ++ E G A VP R + P GG S
Sbjct: 104 PCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPAR-RLPPPCGGTS 162
Query: 213 -GPGDRSLR----SAHLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGPRVAGA 267
G G R+LR +A R W A P P PRP APGT +G VA
Sbjct: 163 LGAGSRALRRPGSAALPRSPSSSRRWAAMPGP---GAPRP----GAPGT-WPVGFAVAAP 214
Query: 268 NHSASGVWAVSPRVTRARRGCATRSWV 294
+A+ V P V A A R WV
Sbjct: 215 PAAAASVAPPPPAVAGA-PAAAFRGWV 240
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 47.4 bits (111), Expect = 2e-05
Identities = 51/164 (31%), Positives = 64/164 (39%), Gaps = 25/164 (15%)
Query: 58 PHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGT-TRRAGHMPASGQVEARNDH 116
P P P PA P+++ + +P PA PG +RA + A A
Sbjct: 131 PAPPPPPAPVAAAAPARAPRAAAA-AATAPPSPGPAQPGPRAQRAAPLAAPPPAPAA--- 186
Query: 117 RPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQH 176
PP APP R P P A A+EP P +P PP+Q +
Sbjct: 187 -PPAVAPPAGPRRAPPP---------AVAAREPPLPPPPQPP--------APPQQQQPPP 228
Query: 177 PERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLR 220
P+ P PEG G AA PV R +R LGG G G R R
Sbjct: 229 PQPQPPPEG-GAVRAGGAARPVSLREVVR-YLGGSGGAGGRLTR 270
Score = 28.5 bits (62), Expect = 7.6
Identities = 31/107 (28%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 164 RSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAH 223
R + P R A P R+P RG A AA P P P P + R+ R+A
Sbjct: 98 RVQPPRRGATPPAPPRAP----RGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAA 153
Query: 224 LGGAGQGRPWTARPPP-----IPHTRPRPKCACSAPGTNRNLGPRVA 265
P A+P P P P P + P GPR A
Sbjct: 154 AAATAPPSPGPAQPGPRAQRAAPLAAP-PPAPAAPPAVAPPAGPRRA 199
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 47.0 bits (110), Expect = 2e-05
Identities = 54/220 (24%), Positives = 76/220 (34%), Gaps = 25/220 (11%)
Query: 86 STEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASR 145
S P P P + G +P G PP +P R R P P W++ R
Sbjct: 74 SIAEPGPGIPVAAAKPGVLPGGGGCTGARTENPP-LSPTRGDCRVPVPAAPISLRWRSGR 132
Query: 146 AKEPRGLPAQR-------------PTWGPGTRSRGPPRQARSQHPERS---PEPEGRGNH 189
P G A R P W P + PP R Q P S P G
Sbjct: 133 EARPGGPQAGRAGDPKADQAMHLQPAWAPKLQ---PPSVCRQQPPGNSRARPHSPHLGTR 189
Query: 190 ARKPAALPVPGRFPIRPVLGG---RSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPR 246
AR P R ++ + GG S P ++ L + GR R + ++ R
Sbjct: 190 ARCPCGCGEARRSALQQLHGGGNRPSAPSRVAVEDPWLEVSSSGRGGPGRGQGLAGSQAR 249
Query: 247 -PKCACSAPGTNRNLGPRVAGANHSASGVWAVSPRVTRAR 285
+ +A +LG ++ + +G W PR T AR
Sbjct: 250 GTRDPEAAQAMLHHLGAQLQAPGNFQAG-WRAQPRRTGAR 288
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 47.0 bits (110), Expect = 2e-05
Identities = 73/254 (28%), Positives = 87/254 (34%), Gaps = 36/254 (14%)
Query: 62 PEGFPDQPLIPATEPQ-SSTTFPG-LSTEAPAPAGPGTTRRAGHM-PASGQVEARNDHRP 118
P G + P P Q S P S + A A + G + P S + + R
Sbjct: 13 PPGVAESPARPRVNEQWGSRAHPNPRSASSAAAAASSSFPPPGFIHPPSSRAAVHSRLRA 72
Query: 119 PGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGP-GTRSR-----GPPRQA 172
A PR PR A SR + + P G R R PP Q
Sbjct: 73 APAAAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPLQP 132
Query: 173 RSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGR----SGPGDRS----LRSAHL 224
RS+HP H R P A VP P+RP G R S PG RS RS
Sbjct: 133 RSRHP-----------HTRYPRA--VPEATPLRPPPGTRPRAKSRPGCRSSPFPARSRTP 179
Query: 225 GGAG--QGRPWTARPPPIPHTRPRPKC----ACSAPGTNRNLGPRVAGANHSASGVWAVS 278
G AG +G P P P H R P + S P R G R AG +
Sbjct: 180 GEAGPPRGDPRPRAPRPGDHPRRSPALRETPSLSPPSPGRRNGKRAAGKGTTPQPQPPPP 239
Query: 279 PRVTRARRGCATRS 292
P TR A R+
Sbjct: 240 PCATRREEDMALRT 253
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/240 (24%), Positives = 88/240 (36%), Gaps = 39/240 (16%)
Query: 58 PHTHPEGFPDQPLIPAT----EPQS-STTFPGLSTEAPA-----PAGPGTTRRAGHMPAS 107
PH P P PL P T +P + S P L + P AGP P
Sbjct: 260 PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFG 319
Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
+A P G +P A +P ++ P + A ++++P P ++P
Sbjct: 320 LPPQASQGQAPLGTSP---AAAYPHTSLQLPASQSALQSQQP---PREQPL--------- 364
Query: 168 PPRQARSQH---PERSPEPEGRGNHARK-PAALPVPGRFPIRPVLGGRSGPGDRSLRSAH 223
PP H P +P P+ A K P L P F + L S S H
Sbjct: 365 PPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTH 424
Query: 224 LGGAGQGRPWTARPPPI---PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPR 280
P +A PPP+ P ++P P PG ++ A+H +G+ V+P+
Sbjct: 425 -------HPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQ 477
Score = 30.8 bits (68), Expect = 1.5
Identities = 42/175 (24%), Positives = 61/175 (34%), Gaps = 37/175 (21%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARND 115
Q+ + + Q ++ A P P T AP+ A PGT + +P G +
Sbjct: 165 QDNESDSDSSAQQQMLQAQPPALQA--PTGVTPAPSSAPPGTPQ----LPTPGPTPSATA 218
Query: 116 HRPPG-----RAPPR-HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPP 169
P G +AP + AP P P QA P + PP
Sbjct: 219 VPPQGSPTASQAPNQPQAPTAPVPHTHIQQA--------------------PALHPQRPP 258
Query: 170 RQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
HP P + A +P+A P +P L G+ PG SL++ L
Sbjct: 259 SPHPPPHPSPHPPLQPLTGSAGQPSA---PSH--AQPPLHGQGPPGPHSLQAGPL 308
Score = 30.0 bits (66), Expect = 2.6
Identities = 44/175 (25%), Positives = 57/175 (32%), Gaps = 49/175 (28%)
Query: 56 QEPHTHPEGFPDQPL-IPATEPQSSTTFPGLST-----EAPAPAGPGTTRRAGHMP---A 106
Q P P P PL +P +P +T P L P +GP ++P A
Sbjct: 357 QPPREQP--LPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 414
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA-SRAKEPRGL---------PAQR 156
+ + + H PP PP P PQ+ S +P GL PA
Sbjct: 415 LKPLSSLSTHHPPSAHPP--------PLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASH 466
Query: 157 PTWG----------------PGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAA 195
P G PG GPP P S P G G A+ P +
Sbjct: 467 PPTGLHQVAPQPPFAQHPFVPG----GPPPITPPTCPSTSTPPAGPGTSAQPPCS 517
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/240 (24%), Positives = 88/240 (36%), Gaps = 39/240 (16%)
Query: 58 PHTHPEGFPDQPLIPAT----EPQS-STTFPGLSTEAPA-----PAGPGTTRRAGHMPAS 107
PH P P PL P T +P + S P L + P AGP P
Sbjct: 814 PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFG 873
Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
+A P G +P A +P ++ P + A ++++P P ++P
Sbjct: 874 LPPQASQGQAPLGTSP---AAAYPHTSLQLPASQSALQSQQP---PREQPL--------- 918
Query: 168 PPRQARSQH---PERSPEPEGRGNHARK-PAALPVPGRFPIRPVLGGRSGPGDRSLRSAH 223
PP H P +P P+ A K P L P F + L S S H
Sbjct: 919 PPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTH 978
Query: 224 LGGAGQGRPWTARPPPI---PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPR 280
P +A PPP+ P ++P P PG ++ A+H +G+ V+P+
Sbjct: 979 -------HPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQ 1031
Score = 30.8 bits (68), Expect = 1.5
Identities = 42/175 (24%), Positives = 61/175 (34%), Gaps = 37/175 (21%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARND 115
Q+ + + Q ++ A P P T AP+ A PGT + +P G +
Sbjct: 719 QDNESDSDSSAQQQMLQAQPPALQA--PTGVTPAPSSAPPGTPQ----LPTPGPTPSATA 772
Query: 116 HRPPG-----RAPPR-HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPP 169
P G +AP + AP P P QA P + PP
Sbjct: 773 VPPQGSPTASQAPNQPQAPTAPVPHTHIQQA--------------------PALHPQRPP 812
Query: 170 RQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
HP P + A +P+A P +P L G+ PG SL++ L
Sbjct: 813 SPHPPPHPSPHPPLQPLTGSAGQPSA---PSH--AQPPLHGQGPPGPHSLQAGPL 862
Score = 30.0 bits (66), Expect = 2.6
Identities = 44/175 (25%), Positives = 57/175 (32%), Gaps = 49/175 (28%)
Query: 56 QEPHTHPEGFPDQPL-IPATEPQSSTTFPGLST-----EAPAPAGPGTTRRAGHMP---A 106
Q P P P PL +P +P +T P L P +GP ++P A
Sbjct: 911 QPPREQP--LPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 968
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA-SRAKEPRGL---------PAQR 156
+ + + H PP PP P PQ+ S +P GL PA
Sbjct: 969 LKPLSSLSTHHPPSAHPP--------PLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASH 1020
Query: 157 PTWG----------------PGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAA 195
P G PG GPP P S P G G A+ P +
Sbjct: 1021 PPTGLHQVAPQPPFAQHPFVPG----GPPPITPPTCPSTSTPPAGPGTSAQPPCS 1071
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/240 (24%), Positives = 88/240 (36%), Gaps = 39/240 (16%)
Query: 58 PHTHPEGFPDQPLIPAT----EPQS-STTFPGLSTEAPA-----PAGPGTTRRAGHMPAS 107
PH P P PL P T +P + S P L + P AGP P
Sbjct: 814 PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFG 873
Query: 108 GQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRG 167
+A P G +P A +P ++ P + A ++++P P ++P
Sbjct: 874 LPPQASQGQAPLGTSP---AAAYPHTSLQLPASQSALQSQQP---PREQPL--------- 918
Query: 168 PPRQARSQH---PERSPEPEGRGNHARK-PAALPVPGRFPIRPVLGGRSGPGDRSLRSAH 223
PP H P +P P+ A K P L P F + L S S H
Sbjct: 919 PPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTH 978
Query: 224 LGGAGQGRPWTARPPPI---PHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVWAVSPR 280
P +A PPP+ P ++P P PG ++ A+H +G+ V+P+
Sbjct: 979 -------HPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQ 1031
Score = 30.8 bits (68), Expect = 1.5
Identities = 42/175 (24%), Positives = 61/175 (34%), Gaps = 37/175 (21%)
Query: 56 QEPHTHPEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARND 115
Q+ + + Q ++ A P P T AP+ A PGT + +P G +
Sbjct: 719 QDNESDSDSSAQQQMLQAQPPALQA--PTGVTPAPSSAPPGTPQ----LPTPGPTPSATA 772
Query: 116 HRPPG-----RAPPR-HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPP 169
P G +AP + AP P P QA P + PP
Sbjct: 773 VPPQGSPTASQAPNQPQAPTAPVPHTHIQQA--------------------PALHPQRPP 812
Query: 170 RQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHL 224
HP P + A +P+A P +P L G+ PG SL++ L
Sbjct: 813 SPHPPPHPSPHPPLQPLTGSAGQPSA---PSH--AQPPLHGQGPPGPHSLQAGPL 862
Score = 30.0 bits (66), Expect = 2.6
Identities = 44/175 (25%), Positives = 57/175 (32%), Gaps = 49/175 (28%)
Query: 56 QEPHTHPEGFPDQPL-IPATEPQSSTTFPGLST-----EAPAPAGPGTTRRAGHMP---A 106
Q P P P PL +P +P +T P L P +GP ++P A
Sbjct: 911 QPPREQP--LPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPA 968
Query: 107 SGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKA-SRAKEPRGL---------PAQR 156
+ + + H PP PP P PQ+ S +P GL PA
Sbjct: 969 LKPLSSLSTHHPPSAHPP--------PLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASH 1020
Query: 157 PTWG----------------PGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAA 195
P G PG GPP P S P G G A+ P +
Sbjct: 1021 PPTGLHQVAPQPPFAQHPFVPG----GPPPITPPTCPSTSTPPAGPGTSAQPPCS 1071
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 46.6 bits (109), Expect = 3e-05
Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 24/179 (13%)
Query: 99 RRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPT 158
+ A +P Q +A G+ P A R + P A + P+G P Q
Sbjct: 413 KMAQALPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQP-- 470
Query: 159 WGPGTRSRGPPRQARSQHPERSPEPEGRGNHAR--KPAALPVPGRFPIRPVLGGRSGPGD 216
GPG + +GPP Q R P P+G+ + + PA P+P R P S P
Sbjct: 471 -GPGPQRQGPPLQQR-------PPPQGQQHLSGLGPPAGSPLPQRLP-----SPTSAPQQ 517
Query: 217 RSLRSA--HLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGPRVAGANHSASG 273
+ ++A G Q RP P P RP ++P R GP A S SG
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGPGAPPAARPP-----ASPSPQRQAGPPQATRQTSVSG 571
Score = 37.0 bits (84), Expect = 0.021
Identities = 51/189 (26%), Positives = 60/189 (31%), Gaps = 30/189 (15%)
Query: 62 PEGFPDQPLIPATEPQSS--------TTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEAR 113
P P QP A P PG A PA P R+AG A+ Q
Sbjct: 511 PTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV- 569
Query: 114 NDHRPPGRAPPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQ 171
G APP+ AP + R PQ + P G Q GP R+ GPP
Sbjct: 570 -----SGPAPPKASGAPPGGQQRQGPPQ-----KPPGPAGPTRQASQAGPVPRT-GPP-- 616
Query: 172 ARSQHPERSPEPEGRGNHAR-KPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
+ P P G G R KP P + P GP L +
Sbjct: 617 -----TTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFN 671
Query: 231 RPWTARPPP 239
P A P P
Sbjct: 672 LPEPAPPRP 680
Score = 35.4 bits (80), Expect = 0.062
Identities = 48/197 (24%), Positives = 68/197 (34%), Gaps = 29/197 (14%)
Query: 71 IPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHR----PPGRAPPRH 126
+P + ++ G + P+P R+ PA + R + PG P R
Sbjct: 418 LPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQ 477
Query: 127 APRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGR 186
P P + P P+G Q+ G GPP A S P+R P P
Sbjct: 478 GP----PLQQRP---------PPQG---QQHLSG-----LGPP--AGSPLPQRLPSPTSA 514
Query: 187 GNHARKPAALPVPGR-FPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRP 245
AA P G+ RPV GG P ++ G P R + P
Sbjct: 515 PQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574
Query: 246 RPKCACSAPGTNRNLGP 262
PK + + PG + GP
Sbjct: 575 -PKASGAPPGGQQRQGP 590
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 46.6 bits (109), Expect = 3e-05
Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 24/179 (13%)
Query: 99 RRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPT 158
+ A +P Q +A G+ P A R + P A + P+G P Q
Sbjct: 413 KMAQALPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQP-- 470
Query: 159 WGPGTRSRGPPRQARSQHPERSPEPEGRGNHAR--KPAALPVPGRFPIRPVLGGRSGPGD 216
GPG + +GPP Q R P P+G+ + + PA P+P R P S P
Sbjct: 471 -GPGPQRQGPPLQQR-------PPPQGQQHLSGLGPPAGSPLPQRLP-----SPTSAPQQ 517
Query: 217 RSLRSA--HLGGAGQGRPWTARPPPIPHTRPRPKCACSAPGTNRNLGPRVAGANHSASG 273
+ ++A G Q RP P P RP ++P R GP A S SG
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGPGAPPAARPP-----ASPSPQRQAGPPQATRQTSVSG 571
Score = 37.4 bits (85), Expect = 0.016
Identities = 47/172 (27%), Positives = 58/172 (33%), Gaps = 30/172 (17%)
Query: 62 PEGFPDQPLIPATEPQSS--------TTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEAR 113
P P QP A P PG A PA P R+AG A+ Q
Sbjct: 511 PTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV- 569
Query: 114 NDHRPPGRAPPR--HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQ 171
G APP+ AP + R PQ + P G Q GP R+ GPP
Sbjct: 570 -----SGPAPPKASGAPPGGQQRQGPPQ-----KPPGPAGPTRQASQAGPVPRT-GPP-- 616
Query: 172 ARSQHPERSPEPEGRGNHAR-KPAALPVPGRFPIRPVLGGRSGPGDRSLRSA 222
+ P P G G R KP P + P GP L+++
Sbjct: 617 -----TTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKAS 663
Score = 35.4 bits (80), Expect = 0.062
Identities = 48/197 (24%), Positives = 68/197 (34%), Gaps = 29/197 (14%)
Query: 71 IPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHR----PPGRAPPRH 126
+P + ++ G + P+P R+ PA + R + PG P R
Sbjct: 418 LPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQ 477
Query: 127 APRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGR 186
P P + P P+G Q+ G GPP A S P+R P P
Sbjct: 478 GP----PLQQRP---------PPQG---QQHLSG-----LGPP--AGSPLPQRLPSPTSA 514
Query: 187 GNHARKPAALPVPGR-FPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRP 245
AA P G+ RPV GG P ++ G P R + P
Sbjct: 515 PQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574
Query: 246 RPKCACSAPGTNRNLGP 262
PK + + PG + GP
Sbjct: 575 -PKASGAPPGGQQRQGP 590
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 45.8 bits (107), Expect = 5e-05
Identities = 73/252 (28%), Positives = 87/252 (34%), Gaps = 42/252 (16%)
Query: 64 GFPDQPLIPATE----------PQSSTTFPGLSTEA--------PAPAGP-------GTT 98
GFP P +P + + PG+ E+ P P GP G T
Sbjct: 276 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRT 335
Query: 99 RRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPT 158
AG A G PPG P P FP +A A+ P G AQ P
Sbjct: 336 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEG--AQGPR 392
Query: 159 WGPGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRS 218
PGT P A S +P P +G+ A P PG FP G R PG +
Sbjct: 393 GEPGTPGSPGPAGA-SGNPGTDGIPGAKGS-AGAPGIAGAPG-FP-----GPRGPPGPQG 444
Query: 219 LRSAHLGGAGQ-GRPWTA--RPPPIPHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVW 275
+ LG GQ G P A + P P P APG G R GA GV
Sbjct: 445 -ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKR--GARGEPGGVG 501
Query: 276 AVSPRVTRARRG 287
+ P R G
Sbjct: 502 PIGPPGERGAPG 513
Score = 43.5 bits (101), Expect = 2e-04
Identities = 57/188 (30%), Positives = 65/188 (34%), Gaps = 19/188 (10%)
Query: 73 ATEPQSSTTFPGLSTEAPAPAG---PGTTRRAGHMPASGQVEARNDHRPPGRA--PPRHA 127
A P +T FPG + P PG G G AR D PPGRA P
Sbjct: 889 AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 948
Query: 128 PRFPRPRMRFPQAWKASRAK---EPRGLPAQRPTWG-PGTR-SRG-PPRQARSQHPERSP 181
P P P S A+ P+GL QR G PG R RG P S P +
Sbjct: 949 PAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG 1008
Query: 182 EPEGRGNHARK----PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQ----GRPW 233
P G+ P L P P R G GP R + G G+ G P
Sbjct: 1009 APGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPG 1068
Query: 234 TARPPPIP 241
PP P
Sbjct: 1069 APGPPGSP 1076
Score = 36.2 bits (82), Expect = 0.037
Identities = 61/221 (27%), Positives = 77/221 (34%), Gaps = 33/221 (14%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P+GF P P PG+S PG + G +G+ + PPG
Sbjct: 220 PQGFQGNPGEPGE--------PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 271
Query: 122 APPRHAPRFP-RPRMRFPQAWKA-SRAKEPRGLPAQRPTWG-PGTRSRGPPRQARSQHPE 178
R P P P ++ + + AK G P + G PG P R E
Sbjct: 272 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGE 331
Query: 179 RS-PEPEG----RGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW 233
R P G RGN + A P PG P+ P GG PG G G+ P
Sbjct: 332 RGRTGPAGAAGARGNDGQPGPAGP-PG--PVGPA-GGPGFPGAP-------GAKGEAGPT 380
Query: 234 TARPPPIPHTRPRPKCACSAPGTNRNLGPRVAGANHSASGV 274
AR P PR PGT + GP A N G+
Sbjct: 381 GARGPE-GAQGPR-----GEPGTPGSPGPAGASGNPGTDGI 415
Score = 35.0 bits (79), Expect = 0.081
Identities = 51/191 (26%), Positives = 61/191 (31%), Gaps = 13/191 (6%)
Query: 76 PQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRM 135
P S G E PG AG A GQ A+ + G+ AP P+
Sbjct: 811 PAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG-PQGPS 869
Query: 136 RFPQAWKASRAKEPRGL-PAQRP---TWGPGTRSR-GPPRQARSQHPERSPEPEGRGNHA 190
P + P+G AQ P T PG R GPP + P P P G+
Sbjct: 870 GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPK 929
Query: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCA 250
PGR P L G +GP G G P A PP P +
Sbjct: 930 GARGDSGPPGRAG-EPGLQGPAGP------PGEKGEPGDDGPSGAEGPPGPQGLAGQRGI 982
Query: 251 CSAPGTNRNLG 261
PG G
Sbjct: 983 VGLPGQRGERG 993
Score = 33.5 bits (75), Expect = 0.24
Identities = 58/212 (27%), Positives = 69/212 (32%), Gaps = 32/212 (15%)
Query: 76 PQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQV----EARNDHR--PPGRAPPRHAP- 128
P+ + PG E P G T R G G+V D R PPG R P
Sbjct: 541 PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG 600
Query: 129 --RFPRPRMRFPQAWKASRAKEP-----RGLPAQRPTWG----PGTR-------SRGPPR 170
FP P+ + KA P RGLP + G PG +G P
Sbjct: 601 VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG 660
Query: 171 QARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
+ Q P P G G KP VPG ++G R G+R QG
Sbjct: 661 PSGFQGLPGPPGPPGEGG---KPGDQGVPGEAGAPGLVGPR---GERGFPGERGSPGAQG 714
Query: 231 RPWTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
P P T PK A G GP
Sbjct: 715 LQGPRGLPGTPGT-DGPKGASGPAGPPGAQGP 745
Score = 30.0 bits (66), Expect = 2.6
Identities = 49/169 (28%), Positives = 63/169 (37%), Gaps = 17/169 (10%)
Query: 73 ATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPR 132
A PQ T G A PG T G G + + PPG PP + +
Sbjct: 871 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG--PPGPSGK-DG 927
Query: 133 PRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHARK 192
P+ + RA EP GL Q P PG +G P E P P+G A +
Sbjct: 928 PKGARGDSGPPGRAGEP-GL--QGPAGPPG--EKGEPGDDGPSGAEGPPGPQGL---AGQ 979
Query: 193 PAALPVPGRFPIR--PVLGGRSG-PGDRSLRSAHLGGAGQGRPWTARPP 238
+ +PG+ R P L G SG PG + A +G P PP
Sbjct: 980 RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA---SGDRGPPGPVGPP 1025
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 45.8 bits (107), Expect = 5e-05
Identities = 73/252 (28%), Positives = 87/252 (34%), Gaps = 42/252 (16%)
Query: 64 GFPDQPLIPATE----------PQSSTTFPGLSTEA--------PAPAGP-------GTT 98
GFP P +P + + PG+ E+ P P GP G T
Sbjct: 207 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRT 266
Query: 99 RRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPT 158
AG A G PPG P P FP +A A+ P G AQ P
Sbjct: 267 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG-ARGPEG--AQGPR 323
Query: 159 WGPGTRSRGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRS 218
PGT P A S +P P +G+ A P PG FP G R PG +
Sbjct: 324 GEPGTPGSPGPAGA-SGNPGTDGIPGAKGS-AGAPGIAGAPG-FP-----GPRGPPGPQG 375
Query: 219 LRSAHLGGAGQ-GRPWTA--RPPPIPHTRPRPKCACSAPGTNRNLGPRVAGANHSASGVW 275
+ LG GQ G P A + P P P APG G R GA GV
Sbjct: 376 -ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKR--GARGEPGGVG 432
Query: 276 AVSPRVTRARRG 287
+ P R G
Sbjct: 433 PIGPPGERGAPG 444
Score = 43.5 bits (101), Expect = 2e-04
Identities = 57/188 (30%), Positives = 65/188 (34%), Gaps = 19/188 (10%)
Query: 73 ATEPQSSTTFPGLSTEAPAPAG---PGTTRRAGHMPASGQVEARNDHRPPGRA--PPRHA 127
A P +T FPG + P PG G G AR D PPGRA P
Sbjct: 820 AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 879
Query: 128 PRFPRPRMRFPQAWKASRAK---EPRGLPAQRPTWG-PGTR-SRG-PPRQARSQHPERSP 181
P P P S A+ P+GL QR G PG R RG P S P +
Sbjct: 880 PAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG 939
Query: 182 EPEGRGNHARK----PAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQ----GRPW 233
P G+ P L P P R G GP R + G G+ G P
Sbjct: 940 APGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPG 999
Query: 234 TARPPPIP 241
PP P
Sbjct: 1000 APGPPGSP 1007
Score = 36.2 bits (82), Expect = 0.037
Identities = 61/221 (27%), Positives = 77/221 (34%), Gaps = 33/221 (14%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P+GF P P PG+S PG + G +G+ + PPG
Sbjct: 151 PQGFQGNPGEPGE--------PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 202
Query: 122 APPRHAPRFP-RPRMRFPQAWKA-SRAKEPRGLPAQRPTWG-PGTRSRGPPRQARSQHPE 178
R P P P ++ + + AK G P + G PG P R E
Sbjct: 203 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGE 262
Query: 179 RS-PEPEG----RGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPW 233
R P G RGN + A P PG P+ P GG PG G G+ P
Sbjct: 263 RGRTGPAGAAGARGNDGQPGPAGP-PG--PVGPA-GGPGFPGAP-------GAKGEAGPT 311
Query: 234 TARPPPIPHTRPRPKCACSAPGTNRNLGPRVAGANHSASGV 274
AR P PR PGT + GP A N G+
Sbjct: 312 GARGPE-GAQGPR-----GEPGTPGSPGPAGASGNPGTDGI 346
Score = 35.0 bits (79), Expect = 0.081
Identities = 51/191 (26%), Positives = 61/191 (31%), Gaps = 13/191 (6%)
Query: 76 PQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRM 135
P S G E PG AG A GQ A+ + G+ AP P+
Sbjct: 742 PAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG-PQGPS 800
Query: 136 RFPQAWKASRAKEPRGL-PAQRP---TWGPGTRSR-GPPRQARSQHPERSPEPEGRGNHA 190
P + P+G AQ P T PG R GPP + P P P G+
Sbjct: 801 GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPK 860
Query: 191 RKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHTRPRPKCA 250
PGR P L G +GP G G P A PP P +
Sbjct: 861 GARGDSGPPGRAG-EPGLQGPAGP------PGEKGEPGDDGPSGAEGPPGPQGLAGQRGI 913
Query: 251 CSAPGTNRNLG 261
PG G
Sbjct: 914 VGLPGQRGERG 924
Score = 33.5 bits (75), Expect = 0.24
Identities = 58/212 (27%), Positives = 69/212 (32%), Gaps = 32/212 (15%)
Query: 76 PQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQV----EARNDHR--PPGRAPPRHAP- 128
P+ + PG E P G T R G G+V D R PPG R P
Sbjct: 472 PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG 531
Query: 129 --RFPRPRMRFPQAWKASRAKEP-----RGLPAQRPTWG----PGTR-------SRGPPR 170
FP P+ + KA P RGLP + G PG +G P
Sbjct: 532 VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG 591
Query: 171 QARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQG 230
+ Q P P G G KP VPG ++G R G+R QG
Sbjct: 592 PSGFQGLPGPPGPPGEGG---KPGDQGVPGEAGAPGLVGPR---GERGFPGERGSPGAQG 645
Query: 231 RPWTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
P P T PK A G GP
Sbjct: 646 LQGPRGLPGTPGT-DGPKGASGPAGPPGAQGP 676
Score = 30.0 bits (66), Expect = 2.6
Identities = 49/169 (28%), Positives = 63/169 (37%), Gaps = 17/169 (10%)
Query: 73 ATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPR 132
A PQ T G A PG T G G + + PPG PP + +
Sbjct: 802 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG--PPGPSGK-DG 858
Query: 133 PRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGRGNHARK 192
P+ + RA EP GL Q P PG +G P E P P+G A +
Sbjct: 859 PKGARGDSGPPGRAGEP-GL--QGPAGPPG--EKGEPGDDGPSGAEGPPGPQGL---AGQ 910
Query: 193 PAALPVPGRFPIR--PVLGGRSG-PGDRSLRSAHLGGAGQGRPWTARPP 238
+ +PG+ R P L G SG PG + A +G P PP
Sbjct: 911 RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA---SGDRGPPGPVGPP 956
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 45.8 bits (107), Expect = 5e-05
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 7/135 (5%)
Query: 71 IPATEPQSSTTFPGLSTEAPAPAG-----PGTTRRAGHMPASGQVEARNDHRPPGRAPPR 125
+P +P+++ L P P G P R + +G+VE R PP + PP
Sbjct: 297 VPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPM 356
Query: 126 HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEG 185
H R P + EPR L A+ GP RGPP R R + G
Sbjct: 357 HHVPGHESRGPPPHELRGGPLPEPRPLMAE--PRGPMLDQRGPPLDGRGGRDPRGIDARG 414
Query: 186 RGNHARKPAALPVPG 200
A + L G
Sbjct: 415 MEARAMEARGLDARG 429
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 45.8 bits (107), Expect = 5e-05
Identities = 55/168 (32%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 90 PAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKE 148
P P GP G T G G V D PPG PR K R ++
Sbjct: 1162 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQ-----------DGAKGDRGED 1210
Query: 149 PRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGR--GNHAR-KPAALPVPGRF-PI 204
G P Q + GP T GPP + P SP EGR G A+ P A+ PG+ P+
Sbjct: 1211 --GEPGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPV 1267
Query: 205 RPV-LGGRSGP-GDRSL-----RSAHLGGAGQ-GRPWTARPPPIPHTR 244
P G+ GP G R L + G GQ G P PP +P R
Sbjct: 1268 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR 1315
Score = 37.0 bits (84), Expect = 0.021
Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 35/196 (17%)
Query: 64 GFPDQPLIPATE-PQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRA 122
G P P P + P+ S FPG PG + G SG+ R + P G
Sbjct: 710 GVPGLPGYPGRQGPKGSLGFPGF---------PGASGEKGARGLSGKSGPRGERGPTG-- 758
Query: 123 PPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPE 182
PR R PR A S P G P +R GP Q P P
Sbjct: 759 -PR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGP-------------QGPNGFPG 803
Query: 183 PEGRGNHARKPAALPVPGRFPIRPVLG--GRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
P+G P +PG R +G G++GP G AG+ P R P
Sbjct: 804 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 860
Query: 241 PHTRPRPKCACSAPGT 256
P P P PGT
Sbjct: 861 P---PGPPGEQGLPGT 873
Score = 36.2 bits (82), Expect = 0.037
Identities = 55/210 (26%), Positives = 68/210 (32%), Gaps = 29/210 (13%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P G P + +P PQ FPG + P P PG GH G+V + PPG
Sbjct: 783 PHGPPGERGLPG--PQGPNGFPG--PKGP-PGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 837
Query: 122 APPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERS 180
P + PQ A + RG P P PG +G P A + +
Sbjct: 838 -----------PGVVGPQGAAGETGPMGERGHPG--PPGPPG--EQGLPGTAGKEGTKGD 882
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGR--------SGPGDRSLRSAHLGGAGQGRP 232
P P G PG + GG SGP + G AG G P
Sbjct: 883 PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP 942
Query: 233 WTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
P P P PG +GP
Sbjct: 943 IGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 972
Score = 30.8 bits (68), Expect = 1.5
Identities = 49/214 (22%), Positives = 68/214 (31%), Gaps = 14/214 (6%)
Query: 69 PLIPATEPQSSTTFPGLSTEAPAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHA 127
P++ A E Q+ P GP G T R G + G + + G PR
Sbjct: 379 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGP 438
Query: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWG-------PGTRS-RGPPRQARSQHPER 179
P + + +A A RG+P G PG +G +Q
Sbjct: 439 QGLTGPPGKAGRRGRAG-ADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG 497
Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPP 239
P +G + +PG R +LG + PG G G P +
Sbjct: 498 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI----PGPPGVRGMDGPQGPKGSL 553
Query: 240 IPHTRPRPKCACSAPGTNRNLGPRVAGANHSASG 273
P P P PGT GP+ A H G
Sbjct: 554 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKG 587
Score = 30.4 bits (67), Expect = 2.0
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 95 PGTTRRAGHMPASGQVEARN---DHRPPGRAPPRHAPRFPRPR----MRFPQAWKASRAK 147
PG G G++ R + P G P+ P P P M PQ K S
Sbjct: 496 PGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGP 555
Query: 148 EPR-GLPAQRPTWGPGTRSRGPPRQARSQHPERSPE 182
+ G P Q+ T PGT+ P+ A H E+ P+
Sbjct: 556 QGEPGPPGQQGT--PGTQGLPGPQGAIGPHGEKGPQ 589
Score = 30.4 bits (67), Expect = 2.0
Identities = 50/200 (25%), Positives = 61/200 (30%), Gaps = 26/200 (13%)
Query: 66 PDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPR 125
P P+ P +P + A A PG GH A G R + PPG P
Sbjct: 1023 PPGPIGPVGQPGA----------AGADGEPGARGPQGHFGAKGDEGTRGFNGPPG---PI 1069
Query: 126 HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS--RGPPRQARSQHPERSPEP 183
P P + P G P R GP +GPP + P P
Sbjct: 1070 GLQGLPGPSGEKGETGDVG-PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP---PGE 1125
Query: 184 EGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHT 243
+G + P PG V G R G++ S G G P P
Sbjct: 1126 KGEPGESGSPGIQGEPG------VKGPRGERGEKG-ESGQPGEPGPPGPKGPTGDDGPKG 1178
Query: 244 RPRPKCACSAPGTNRNLGPR 263
P P PG GPR
Sbjct: 1179 NPGPVGFPGDPGPPGEGGPR 1198
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 45.8 bits (107), Expect = 5e-05
Identities = 55/168 (32%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 90 PAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHAPRFPRPRMRFPQAWKASRAKE 148
P P GP G T G G V D PPG PR K R ++
Sbjct: 1141 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQ-----------DGAKGDRGED 1189
Query: 149 PRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPEPEGR--GNHAR-KPAALPVPGRF-PI 204
G P Q + GP T GPP + P SP EGR G A+ P A+ PG+ P+
Sbjct: 1190 --GEPGQPGSPGP-TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPV 1246
Query: 205 RPV-LGGRSGP-GDRSL-----RSAHLGGAGQ-GRPWTARPPPIPHTR 244
P G+ GP G R L + G GQ G P PP +P R
Sbjct: 1247 GPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLR 1294
Score = 37.0 bits (84), Expect = 0.021
Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 35/196 (17%)
Query: 64 GFPDQPLIPATE-PQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRA 122
G P P P + P+ S FPG PG + G SG+ R + P G
Sbjct: 689 GVPGLPGYPGRQGPKGSLGFPGF---------PGASGEKGARGLSGKSGPRGERGPTG-- 737
Query: 123 PPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERSPE 182
PR R PR A S P G P +R GP Q P P
Sbjct: 738 -PR-GQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGP-------------QGPNGFPG 782
Query: 183 PEGRGNHARKPAALPVPGRFPIRPVLG--GRSGPGDRSLRSAHLGGAGQGRPWTARPPPI 240
P+G P +PG R +G G++GP G AG+ P R P
Sbjct: 783 PKGPPG---PPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPG 839
Query: 241 PHTRPRPKCACSAPGT 256
P P P PGT
Sbjct: 840 P---PGPPGEQGLPGT 852
Score = 36.2 bits (82), Expect = 0.037
Identities = 55/210 (26%), Positives = 68/210 (32%), Gaps = 29/210 (13%)
Query: 62 PEGFPDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGR 121
P G P + +P PQ FPG + P P PG GH G+V + PPG
Sbjct: 762 PHGPPGERGLPG--PQGPNGFPG--PKGP-PGPPGKDGLPGHPGQRGEVGFQGKTGPPGP 816
Query: 122 APPRHAPRFPRPRMRFPQ-AWKASRAKEPRGLPAQRPTWGPGTRSRGPPRQARSQHPERS 180
P + PQ A + RG P P PG +G P A + +
Sbjct: 817 -----------PGVVGPQGAAGETGPMGERGHPG--PPGPPG--EQGLPGTAGKEGTKGD 861
Query: 181 PEPEGRGNHARKPAALPVPGRFPIRPVLGGR--------SGPGDRSLRSAHLGGAGQGRP 232
P P G PG + GG SGP + G AG G P
Sbjct: 862 PGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGP 921
Query: 233 WTARPPPIPHTRPRPKCACSAPGTNRNLGP 262
P P P PG +GP
Sbjct: 922 IGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 951
Score = 34.3 bits (77), Expect = 0.14
Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 3/125 (2%)
Query: 108 GQVEARNDHRP--PGRAPPRHAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS 165
GQ E + +P R+P + R RP+ + PQ+ A + +G + PG
Sbjct: 231 GQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGMLV 290
Query: 166 RGPPRQARSQHPERSPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLG 225
GPP P +G P PGR + P G GP SL
Sbjct: 291 EGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGL-PGSDGAPGPPGTSLMLPFRF 349
Query: 226 GAGQG 230
G+G G
Sbjct: 350 GSGGG 354
Score = 30.8 bits (68), Expect = 1.5
Identities = 49/214 (22%), Positives = 68/214 (31%), Gaps = 14/214 (6%)
Query: 69 PLIPATEPQSSTTFPGLSTEAPAPAGP-GTTRRAGHMPASGQVEARNDHRPPGRAPPRHA 127
P++ A E Q+ P GP G T R G + G + + G PR
Sbjct: 358 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGP 417
Query: 128 PRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWG-------PGTRS-RGPPRQARSQHPER 179
P + + +A A RG+P G PG +G +Q
Sbjct: 418 QGLTGPPGKAGRRGRAG-ADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG 476
Query: 180 SPEPEGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPP 239
P +G + +PG R +LG + PG G G P +
Sbjct: 477 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGI----PGPPGVRGMDGPQGPKGSL 532
Query: 240 IPHTRPRPKCACSAPGTNRNLGPRVAGANHSASG 273
P P P PGT GP+ A H G
Sbjct: 533 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKG 566
Score = 30.4 bits (67), Expect = 2.0
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 95 PGTTRRAGHMPASGQVEARN---DHRPPGRAPPRHAPRFPRPR----MRFPQAWKASRAK 147
PG G G++ R + P G P+ P P P M PQ K S
Sbjct: 475 PGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGP 534
Query: 148 EPR-GLPAQRPTWGPGTRSRGPPRQARSQHPERSPE 182
+ G P Q+ T PGT+ P+ A H E+ P+
Sbjct: 535 QGEPGPPGQQGT--PGTQGLPGPQGAIGPHGEKGPQ 568
Score = 30.4 bits (67), Expect = 2.0
Identities = 50/200 (25%), Positives = 61/200 (30%), Gaps = 26/200 (13%)
Query: 66 PDQPLIPATEPQSSTTFPGLSTEAPAPAGPGTTRRAGHMPASGQVEARNDHRPPGRAPPR 125
P P+ P +P + A A PG GH A G R + PPG P
Sbjct: 1002 PPGPIGPVGQPGA----------AGADGEPGARGPQGHFGAKGDEGTRGFNGPPG---PI 1048
Query: 126 HAPRFPRPRMRFPQAWKASRAKEPRGLPAQRPTWGPGTRS--RGPPRQARSQHPERSPEP 183
P P + P G P R GP +GPP + P P
Sbjct: 1049 GLQGLPGPSGEKGETGDVG-PMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP---PGE 1104
Query: 184 EGRGNHARKPAALPVPGRFPIRPVLGGRSGPGDRSLRSAHLGGAGQGRPWTARPPPIPHT 243
+G + P PG V G R G++ S G G P P
Sbjct: 1105 KGEPGESGSPGIQGEPG------VKGPRGERGEKG-ESGQPGEPGPPGPKGPTGDDGPKG 1157
Query: 244 RPRPKCACSAPGTNRNLGPR 263
P P PG GPR
Sbjct: 1158 NPGPVGFPGDPGPPGEGGPR 1177
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,322,417
Number of Sequences: 37866
Number of extensions: 1240396
Number of successful extensions: 9666
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 1235
Number of HSP's that attempted gapping in prelim test: 7066
Number of HSP's gapped (non-prelim): 3233
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.