Guide to the Human Genome
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Name: LOC100129410 Sequence: fasta or formatted (261aa) NCBI GI: 169166533
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {261aa} PREDICTED: hypothetical protein
alt prot {263aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         37           2
 C cysteine            2.3          6           1
 D aspartate           3.8         10           2
 E glutamate           9.2         24           2
 F phenylalanine       1.9          5           1
 G glycine            21.5         56           2
 H histidine           0.0          0           0
 I isoleucine          1.5          4           1
 K lysine              2.3          6           1
 L leucine             5.4         14           2
 M methionine          0.8          2           1
 N asparagine          1.1          3           1
 P proline             0.8          2           1
 Q glutamine           1.5          4           1
 R arginine            1.9          5           1
 S serine              5.4         14           1
 T threonine           5.4         14           2
 V valine             19.5         51           3
 W tryptophan          1.5          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129410          1.000   PREDICTED: hypothetical protein 
LOC100129410          0.866   PREDICTED: hypothetical protein 
LOR                   0.076   loricrin 
KRT9                  0.058   keratin 9 
KRT1                  0.054   keratin 1 
ARID1B                0.050   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.050   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.050   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
KRT2                  0.050   keratin 2 
LOC100133794          0.045   PREDICTED: hypothetical protein, partial 
LOC653203             0.045   PREDICTED: hypothetical protein 
ELN                   0.043   elastin isoform e precursor 
ELN                   0.043   elastin isoform a precursor 
LOC727962             0.043   PREDICTED: similar to collagen, type I, alpha 2 [Ho...
KRT6C                 0.041   keratin 6C 
KRT6B                 0.041   keratin 6B 
ELN                   0.039   elastin isoform d precursor 
ELN                   0.039   elastin isoform c precursor 
ELN                   0.039   elastin isoform b precursor 
KRTAP5-4              0.039   keratin associated protein 5-4 
LOC100290496          0.039   PREDICTED: hypothetical protein XP_002348126 
MAF                   0.039   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.039   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
KRT6A                 0.037   keratin 6A 
EN2                   0.035   engrailed homeobox 2 
RASA1                 0.035   RAS p21 protein activator 1 isoform 1 
GSK3A                 0.035   glycogen synthase kinase 3 alpha 
KRT10                 0.035   keratin 10 
ADRA1D                0.035   alpha-1D-adrenergic receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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