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Search of human proteins with 169166092
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169166092 PREDICTED: hypothetical protein [Homo sapiens]
(178 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169166092 PREDICTED: hypothetical protein [Homo sapiens] 379 e-106
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 45 3e-05
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 40 0.001
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 39 0.002
gi|28274709 zinc finger, X-linked, duplicated A [Homo sapiens] 37 0.009
gi|7706501 WW domain binding protein 11 [Homo sapiens] 37 0.009
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 35 0.034
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 35 0.034
gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens] 35 0.034
gi|157364934 fibrosin [Homo sapiens] 35 0.044
gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens] 34 0.058
gi|148727370 immediate early response 5-like [Homo sapiens] 34 0.058
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 33 0.13
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 33 0.13
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 33 0.13
gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens] 33 0.17
gi|239747673 PREDICTED: doublecortin domain-containing protein E... 32 0.22
gi|239741542 PREDICTED: doublecortin domain-containing protein E... 32 0.22
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 32 0.22
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 32 0.29
gi|121114296 caudal type homeobox 1 [Homo sapiens] 32 0.29
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 32 0.29
gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo sa... 32 0.38
gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo ... 32 0.38
gi|113419362 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|113418886 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|113419893 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 31 0.49
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 31 0.64
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 31 0.64
>gi|169166092 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 379 bits (973), Expect = e-106
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MVSREPRSWDQAFLLELGQPPPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRR 60
MVSREPRSWDQAFLLELGQPPPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRR
Sbjct: 1 MVSREPRSWDQAFLLELGQPPPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRR 60
Query: 61 LEGLWPPRAPAPGRQRELEEEAGGGGKQCQDWSELGLGLGLGFGETDKSWCPRCRSNLSQ 120
LEGLWPPRAPAPGRQRELEEEAGGGGKQCQDWSELGLGLGLGFGETDKSWCPRCRSNLSQ
Sbjct: 61 LEGLWPPRAPAPGRQRELEEEAGGGGKQCQDWSELGLGLGLGFGETDKSWCPRCRSNLSQ 120
Query: 121 PTSLRGTLPGREQGKLRKADRRPCSSVGNLGETEASEAWTLQPVAAAPKAAVDQPWSR 178
PTSLRGTLPGREQGKLRKADRRPCSSVGNLGETEASEAWTLQPVAAAPKAAVDQPWSR
Sbjct: 121 PTSLRGTLPGREQGKLRKADRRPCSSVGNLGETEASEAWTLQPVAAAPKAAVDQPWSR 178
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 45.1 bits (105), Expect = 3e-05
Identities = 42/144 (29%), Positives = 55/144 (38%), Gaps = 16/144 (11%)
Query: 13 FLLELGQPPPAPARPAGRPHSLALT--------LPASRAGCPRGVRRPGDCGEGRRLEGL 64
F+L PPPA +P SL+ L ++ G RP D G GRRL G
Sbjct: 810 FILGEPDPPPAATPVMPKPSSLSADTAALSHARLRSNSIGARHSTPRPLDAGRGRRLGG- 868
Query: 65 WPPRAPAPGRQRELEEEAGGGGK-----QCQDWSELGLGLGLGFGETDKSWCPRCRSNLS 119
PR PAP + R GGG + S L L + G P +LS
Sbjct: 869 --PRDPAPEKSRASSSGGSGGGSGGRVPKSASVSALSLIITADDGSGGPLMSPLSPRSLS 926
Query: 120 QPTSLRGTLPGREQGKLRKADRRP 143
S R + P R+ + + R P
Sbjct: 927 SNPSSRDSSPSRDPSPVCGSLRPP 950
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 18/74 (24%)
Query: 18 GQPPPAPARPAGRPHSLA-LTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAPGRQR 76
G P P+ PAGRPH A P R GC +R P GRR GRQR
Sbjct: 170 GPATPDPSPPAGRPHGPAGRAAPGRRPGCTAQLRAP-----GRR------------GRQR 212
Query: 77 ELEEEAGGGGKQCQ 90
L GGG +Q Q
Sbjct: 213 LLVHPGGGGRRQWQ 226
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 41 SRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAPGRQRELEEEAGGGGKQCQDWSELGLGLG 100
+R+ P R G G G G W RAP+P R L+E A GG + W+ LG
Sbjct: 257 NRSEAPGSGGRGGAAGGG----GGWTSRAPSPQAGRSLQEGAEGGQGCSEAWATLGWAAA 312
Query: 101 LGFG 104
GFG
Sbjct: 313 GGFG 316
>gi|28274709 zinc finger, X-linked, duplicated A [Homo sapiens]
Length = 799
Score = 37.0 bits (84), Expect = 0.009
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 14 LLELGQPPPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPR--APA 71
+L L PPP P P L A +AG P+ PGDC E R L P APA
Sbjct: 180 VLTLATPPPHAWEPGAAPAQQPRCLIAPQAGFPQAA-HPGDCPELRSDLLLAEPAEPAPA 238
Query: 72 PGRQRELEEEAGGGG 86
P Q E E A G
Sbjct: 239 PAPQEEAEGLAAALG 253
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/58 (43%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 17 LGQPPPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAPGR 74
LG PP P RP G P L P G P +R PG G L L PP P PGR
Sbjct: 413 LGPPPAPPLRPPGPPTGLP---PGPPPGAPPFLRPPGMPGLRGPLPRLLPP-GPPPGR 466
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 35.0 bits (79), Expect = 0.034
Identities = 34/115 (29%), Positives = 39/115 (33%), Gaps = 15/115 (13%)
Query: 20 PPPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAP------G 73
PPP RP P + P R C R P G R WP AP P G
Sbjct: 378 PPPRRQRPRRLPRASLQEEPKRRPPCAR----PSGAGPAREGPAAWPGGAPTPPHARPTG 433
Query: 74 RQRELE--EEAGGGGKQCQDW---SELGLGLGLGFGETDKSWCPRCRSNLSQPTS 123
R+++ E A GG W S G G G G + R R L S
Sbjct: 434 RRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARS 488
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 35.0 bits (79), Expect = 0.034
Identities = 34/115 (29%), Positives = 39/115 (33%), Gaps = 15/115 (13%)
Query: 20 PPPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAP------G 73
PPP RP P + P R C R P G R WP AP P G
Sbjct: 378 PPPRRQRPRRLPRASLQEEPKRRPPCAR----PSGAGPAREGPAAWPGGAPTPPHARPTG 433
Query: 74 RQRELE--EEAGGGGKQCQDW---SELGLGLGLGFGETDKSWCPRCRSNLSQPTS 123
R+++ E A GG W S G G G G + R R L S
Sbjct: 434 RRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARS 488
>gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens]
Length = 803
Score = 35.0 bits (79), Expect = 0.034
Identities = 31/88 (35%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 14 LLELGQPPPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAPG 73
+L L PPP P P L A +AG P PGDC E L P PAP
Sbjct: 184 VLTLATPPPHAWEPGAAPAQQPGCLIAPQAGFPHAA-HPGDCPELPPDLLLAEPAEPAPA 242
Query: 74 RQRELEEEAGGGGKQCQDWSELGLGLGL 101
EEEA G LG G G+
Sbjct: 243 PAP--EEEAEGPAAALGPRGPLGSGPGV 268
>gi|157364934 fibrosin [Homo sapiens]
Length = 460
Score = 34.7 bits (78), Expect = 0.044
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 14/58 (24%)
Query: 20 PPPAPARPAGRPHSLALTLPASRAGCPRGV---RRPGDCGEGRRLEGLWPPRAPAPGR 74
PPP PA G PH L+ T P + G P + RP PPR P P R
Sbjct: 411 PPPPPAAAPGTPHLLSKTPPGALLGAPPPLVPAPRPSS-----------PPRGPGPAR 457
>gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens]
Length = 566
Score = 34.3 bits (77), Expect = 0.058
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 11 QAFLLELGQPPPAPA-RPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRA 69
+ FLL L P P PA +P P S AL AG R + P DC G G+ P+A
Sbjct: 162 EQFLLPLRAPFPEPALQPDPAPLSAALQSLKRAAGGERRGKAPTDCASGPAAAGIKKPKA 221
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 34.3 bits (77), Expect = 0.058
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 21 PPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDC----GEGRRLEGLWPPRAPAP 72
P P +P P L L PA A CPR R P C G PP +PAP
Sbjct: 174 PLEPLQPGPAPLPLPLPPPAPAALCPRDPRAPAACSAPPGAAPPAAAASPPASPAP 229
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 33.1 bits (74), Expect = 0.13
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 22 PAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAP 72
P PAG P + ++LP+ AG P RPG GE R PP P P
Sbjct: 1234 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGP 1284
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 33.1 bits (74), Expect = 0.13
Identities = 41/154 (26%), Positives = 52/154 (33%), Gaps = 29/154 (18%)
Query: 22 PAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGE--------------------GRRL 61
P P PAG P S+ L P G P + PGD G R
Sbjct: 213 PGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGP 272
Query: 62 EGLWPPRA----PAPGRQRELEEEAGGGGKQCQDWSELGLGLGLGFGETDKSWCPRCRSN 117
EG P+ P P + +G G +D GL GE ++ P +
Sbjct: 273 EGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKG- 331
Query: 118 LSQPTSLRGTLPGREQGKLRKADRRPCSSVGNLG 151
P L G LPGR K K +R +G G
Sbjct: 332 ---PNGLPG-LPGRAGSKGEKGERGRAGELGEAG 361
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 33.1 bits (74), Expect = 0.13
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 22 PAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAP 72
P PAG P + ++LP+ AG P RPG GE R PP P P
Sbjct: 1233 PGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGP 1283
>gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens]
Length = 186
Score = 32.7 bits (73), Expect = 0.17
Identities = 33/96 (34%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 3 SREPRSWDQAFLLELGQPPPAPARPAGRPHSLALTLPASRAGCPRGVRRPG--DCGEGRR 60
SR+P L Q PP A + + LAL LP G V RPG D G
Sbjct: 59 SRQPPCGALTSLQAAPQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGP 118
Query: 61 LEGLWPPRAPAPGRQRELEEEAGGGGKQCQDWSELG 96
+ PRA A G E+E G ++C+ SELG
Sbjct: 119 QQPDEEPRATARG----YEKEQDGAPEKCKS-SELG 149
>gi|239747673 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 714
Score = 32.3 bits (72), Expect = 0.22
Identities = 33/133 (24%), Positives = 47/133 (35%), Gaps = 22/133 (16%)
Query: 20 PPPAPARPAGRPHSLALTLPASRAGCPR-----GVRRPGDCGEGRRLEGLWPPRAPAPGR 74
P P RP P L L A R+ PR +R PG P +P+ R
Sbjct: 79 PARVPRRPVSCPGPEPLALAARRSQSPRVASTRSLRPPGS-----------PVPSPSSPR 127
Query: 75 QRELEEEAGGGGKQCQDWSELGLGLGLGFGETDKSWCPRCRSNLSQPTSLRGTLPGREQG 134
+ + G WS +G + + CPRCRS + + RG G +G
Sbjct: 128 PVPVPSPSCASG-----WSGPPVGGARAWARLCRRRCPRCRSLSAPASEERGAAMG-TRG 181
Query: 135 KLRKADRRPCSSV 147
D P ++
Sbjct: 182 PSAPVDTTPAKTI 194
>gi|239741542 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 510
Score = 32.3 bits (72), Expect = 0.22
Identities = 33/133 (24%), Positives = 47/133 (35%), Gaps = 22/133 (16%)
Query: 20 PPPAPARPAGRPHSLALTLPASRAGCPR-----GVRRPGDCGEGRRLEGLWPPRAPAPGR 74
P P RP P L L A R+ PR +R PG P +P+ R
Sbjct: 79 PARVPRRPVSCPGPEPLALAARRSQSPRVASTRSLRPPGS-----------PVPSPSSPR 127
Query: 75 QRELEEEAGGGGKQCQDWSELGLGLGLGFGETDKSWCPRCRSNLSQPTSLRGTLPGREQG 134
+ + G WS +G + + CPRCRS + + RG G +G
Sbjct: 128 PVPVPSPSCASG-----WSGPPVGGARAWARLCRRRCPRCRSLSAPASEERGAAMG-TRG 181
Query: 135 KLRKADRRPCSSV 147
D P ++
Sbjct: 182 PSAPVDTTPAKTI 194
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 32.3 bits (72), Expect = 0.22
Identities = 47/175 (26%), Positives = 57/175 (32%), Gaps = 42/175 (24%)
Query: 19 QPPPAPARPAG------------------RPHSLALTLPASRAGCPRGVRRPGDCGEGRR 60
+P P PARP G RPH A LP R RRPG G
Sbjct: 55 RPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPG--GFPLA 112
Query: 61 LEGLWPPRAPAPGRQRELEEEAGGGGKQCQDWSELGLGLGLGFGETDKSWCPRCRSNLSQ 120
P PAPGR L L G G + RS+
Sbjct: 113 WGSPQPAPRPAPGRSSAL---------------ALAGGAAPGVARAQRPGGSGGRSHPGG 157
Query: 121 PTSLRGTLPGREQGKLRKADRRPCSSVGNLGETEASEAWTLQPVAAAPKAAVDQP 175
P S RG G + DR P ++ G + A T + AAAP ++ P
Sbjct: 158 PGSPRG------GGTVGPGDRGPAAADGGRPQRTVRAAET-RGAAAAPPLTLEGP 205
Score = 28.1 bits (61), Expect = 4.1
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 13 FLLELGQPPPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAP 72
F L G P PAP GR +LAL A+ G R +RPG G G PR
Sbjct: 109 FPLAWGSPQPAPRPAPGRSSALALAGGAA-PGVAR-AQRPGGSGGRSHPGGPGSPRGGGT 166
Query: 73 GRQRELEEEAGGGGK 87
+ A GG+
Sbjct: 167 VGPGDRGPAAADGGR 181
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 32.0 bits (71), Expect = 0.29
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 20 PPPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGE---GRRLEGLWPPRAPAPGRQR 76
P PAP RP P + PA+R PG C GL P APGRQR
Sbjct: 41 PRPAPPRPGEEPGNRHPPPPAART-------HPGSCRARCPSPAAGGLRGPWTAAPGRQR 93
Query: 77 ELEEEAGGGGKQCQDWS 93
E A ++ + W+
Sbjct: 94 ADEGAAAARPERQRVWA 110
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 32.0 bits (71), Expect = 0.29
Identities = 27/73 (36%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 22 PAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAP-APGRQRELEE 80
P PA PA P SLA P + P P G G + L P P +PG QR
Sbjct: 78 PGPAAPAASPASLAFGPPPDFSPVP----APPGPGPGLLAQPLGGPGTPSSPGAQRPTPY 133
Query: 81 E-------AGGGG 86
E AGGGG
Sbjct: 134 EWMRRSVAAGGGG 146
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 32.0 bits (71), Expect = 0.29
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 21 PPAPARPAGRPHSLALTLPASRAGCPRGVRRPGDCGEGRRLEG---LWPPRAPAPGRQRE 77
P A G P A + +R P G P D GE RR G L PP P P +
Sbjct: 80 PQAQQHRGGGPQ--AQSHGEARLSDPPGRAAPPDVGEERRGGGGTELGPPAPPRPRNGYQ 137
Query: 78 LEEEAGGGGKQCQDWSELGLGLG 100
GGGG + ++ +G G G
Sbjct: 138 PHRPPGGGGGKRRNSCNVGGGGG 160
>gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo
sapiens]
Length = 422
Score = 31.6 bits (70), Expect = 0.38
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 17 LGQPPPAPARPAGRPHSLALTLPASRA----GCPRGVRRPGDCGEGRRLEGLWPPRAPAP 72
+GQP PA ARP G+ L +PAS+ G RG + E + G PPR PAP
Sbjct: 283 VGQPGPAQARPQGQG---VLAIPASQGSPWWGWGRGPQVARAAWEPQ--AGAAPPRQPAP 337
>gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo
sapiens]
Length = 319
Score = 31.6 bits (70), Expect = 0.38
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 53 GDCGEGRRLEGLWPPRAPAPGRQRELEEEAGGGGKQCQDWSELGLGLGLGFGETDKSWCP 112
GD G+G E PP P PG E AG G + C G +G ++ P
Sbjct: 194 GDLGDGEEAEAEAPPAGPRPG-----PEPAGLGRRPCPYEQAQG---AMGRRSSEGPPGP 245
Query: 113 RCRSNLSQPTSLRGTLPGREQGKLRKADRRPCSSVGNLGETEASEAWTLQPVAAAP 168
R + S P S+ L + ++ + +RP S + ++G+ AW + P
Sbjct: 246 RTQPP-SSPASVYHVLGRGDPLRVPRCLQRPLSPLPHVGDA-PPRAWVTSGLPQPP 299
>gi|113419362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 31.2 bits (69), Expect = 0.49
Identities = 31/98 (31%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 20 PPPAPARPAGRPHSLAL-TLPASRAGCP----------RGVRRPGDCGEGRRLEGLWPPR 68
PPP RP R H L PAS G P G G G L PP
Sbjct: 5 PPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALSGGPGRAAGSAIGRGAHLSPSRPPA 64
Query: 69 APAPGRQRELEEEAG-----GGGKQCQDWSELGLGLGL 101
AP P +RE+ G GG +W G GL
Sbjct: 65 APPP--RREVLSSPGCCAALAGGDTNGEWILRGSTWGL 100
>gi|113418886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 31.2 bits (69), Expect = 0.49
Identities = 31/98 (31%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 20 PPPAPARPAGRPHSLAL-TLPASRAGCP----------RGVRRPGDCGEGRRLEGLWPPR 68
PPP RP R H L PAS G P G G G L PP
Sbjct: 5 PPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALSGGPGRAAGSAIGRGAHLSPSRPPA 64
Query: 69 APAPGRQRELEEEAG-----GGGKQCQDWSELGLGLGL 101
AP P +RE+ G GG +W G GL
Sbjct: 65 APPP--RREVLSSPGCCAALAGGDTNGEWILRGSTWGL 100
>gi|113419893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 31.2 bits (69), Expect = 0.49
Identities = 31/98 (31%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 20 PPPAPARPAGRPHSLAL-TLPASRAGCP----------RGVRRPGDCGEGRRLEGLWPPR 68
PPP RP R H L PAS G P G G G L PP
Sbjct: 5 PPPCGPRPGPRSHKLPRECFPASGPGSPVLCAAALSGGPGRAAGSAIGRGAHLSPSRPPA 64
Query: 69 APAPGRQRELEEEAG-----GGGKQCQDWSELGLGLGL 101
AP P +RE+ G GG +W G GL
Sbjct: 65 APPP--RREVLSSPGCCAALAGGDTNGEWILRGSTWGL 100
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 31.2 bits (69), Expect = 0.49
Identities = 38/109 (34%), Positives = 46/109 (42%), Gaps = 27/109 (24%)
Query: 20 PPPAPA-RPAGRPHSLALT---LPASRAGC-PRGVRRPGDCGEGRRLEG------LWPPR 68
P AP RPA PH L L ++ AG P +R P G L G + PP
Sbjct: 151 PQRAPILRPAFVPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPM 210
Query: 69 APAPGR--------QRELEEEAGGGGKQCQDWSELGLGLGLGFGETDKS 109
A APG + LEE A ELGLGLGLG E +++
Sbjct: 211 ARAPGPPLGSMAALRPPLEEPAAP--------RELGLGLGLGLKEKEEA 251
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.8 bits (68), Expect = 0.64
Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 18 GQPPPAPARPAGRPHSLALTLPASRA-GCPRGVRRPGDCGEGRRLEGLWPP--------- 67
G PP A R + P R G G RRPG G+G G P
Sbjct: 147 GLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSR 206
Query: 68 RAPAPGRQRELEEEAGGGG 86
R P PG +R L G G
Sbjct: 207 RTPPPGPRRPLRSPHSGSG 225
Score = 30.8 bits (68), Expect = 0.64
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 15/57 (26%)
Query: 20 PPPAPARPAGRPHS----LALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAP 72
PPP P RP PHS P+ AG P +R P RAPAP
Sbjct: 209 PPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPAS-----------TTRAPAP 254
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.8 bits (68), Expect = 0.64
Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 18 GQPPPAPARPAGRPHSLALTLPASRA-GCPRGVRRPGDCGEGRRLEGLWPP--------- 67
G PP A R + P R G G RRPG G+G G P
Sbjct: 147 GLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSR 206
Query: 68 RAPAPGRQRELEEEAGGGG 86
R P PG +R L G G
Sbjct: 207 RTPPPGPRRPLRSPHSGSG 225
Score = 30.8 bits (68), Expect = 0.64
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 15/57 (26%)
Query: 20 PPPAPARPAGRPHS----LALTLPASRAGCPRGVRRPGDCGEGRRLEGLWPPRAPAP 72
PPP P RP PHS P+ AG P +R P RAPAP
Sbjct: 209 PPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPAS-----------TTRAPAP 254
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,728,931
Number of Sequences: 37866
Number of extensions: 601477
Number of successful extensions: 2749
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 2567
Number of HSP's gapped (non-prelim): 378
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.