Guide to the Human Genome
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Name: LOC100133716 Sequence: fasta or formatted (178aa) NCBI GI: 169166092
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         18           3
 C cysteine            3.4          6           1
 D aspartate           3.4          6           1
 E glutamate           7.9         14           3
 F phenylalanine       1.1          2           1
 G glycine            12.9         23           4
 H histidine           0.6          1           1
 I isoleucine          0.0          0           0
 K lysine              2.8          5           1
 L leucine            10.7         19           2
 M methionine          0.6          1           1
 N asparagine          1.1          2           1
 P proline            11.8         21           3
 Q glutamine           5.1          9           1
 R arginine           11.8         21           2
 S serine              7.3         13           2
 T threonine           3.4          6           1
 V valine              2.8          5           1
 W tryptophan          3.4          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
MAST3                 0.056   microtubule associated serine/threonine kinase 3 [H...
LOC283999             0.042   hypothetical protein LOC283999 
LTK                   0.040   leukocyte receptor tyrosine kinase isoform 1 precurs...
ZXDA                  0.034   zinc finger, X-linked, duplicated A 
WBP11                 0.034   WW domain binding protein 11 
LOC100290372          0.028   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.028   PREDICTED: hypothetical protein XP_002342652 
ZXDB                  0.028   zinc finger, X-linked, duplicated B 
FBRS                  0.028   fibrosin 
INSM2                 0.025   insulinoma-associated protein IA-6 
IER5L                 0.025   immediate early response 5-like 
COL4A6                0.023   type IV alpha 6 collagen isoform A precursor 
COL9A3                0.023   alpha 3 type IX collagen 
COL4A6                0.023   type IV alpha 6 collagen isoform B precursor 
LOC100294390          0.023   PREDICTED: similar to hCG2041351 
LOC728597             0.020   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.020   PREDICTED: doublecortin domain-containing protein E...
BBC3                  0.020   BCL2 binding component 3 isoform 1 
LOC729370             0.020   PREDICTED: hypothetical protein 
CDX1                  0.020   caudal type homeobox 1 
MEPCE                 0.020   bin3, bicoid-interacting 3 
LOC652119             0.020   PREDICTED: similar to putative DUX4 protein 
LOC100287293          0.020   PREDICTED: hypothetical protein XP_002343924 
LOC645249             0.017   PREDICTED: hypothetical protein 
LOC645249             0.017   PREDICTED: hypothetical protein 
LOC645249             0.017   PREDICTED: hypothetical protein 
RBM42                 0.017   RNA binding motif protein 42 
LOC729570             0.017   PREDICTED: hypothetical protein 
LOC729570             0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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